Rh5CG054200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011685
Physical Location & Seq
Reverse (-)
3891021 .. 3892511
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG054200.1

Sequence Viewer

Length: 918 bp
ATGCCAACGACTCCAACTCGTCTTCTCCTTAAACAAGTCCTGATCGACTCCGTCAATATCACCCTGAGAAACAAGCAAACATTTCTTTCCATTTTTGCCCTCACGACCCTCCCTCTCTCCCTCCTCCTCTTCTCCCTCTCCCTCTCCTCCCACCCCCTCAAATCCCACGTCTTCCATCTCGAGTCCCTCGCCTCCCAGGCCCCCACGCGCTTCGAGGCCCGCCAGGTCTGGAAGGAGTCCCGCGACGACGCCGTTTCGCTCTTCCGCATCAAGCTCCTCTACTTCCTCCCCTCCTTCCTCTTCTCCCTCACCGCCTCCGTCACCGCCGTCACCGCCACCTCATTAGCCTACCACGGAAGATCCCCAAATCTCCTCCGTTCCTCACTCGCCGCCGTCAAGTCCAGCTGGAGCAGACCCTTCGCCACCAGCGTCTGCATCTACGCGCTCCTCTTCGCGTACGCCCTCGTCCCCCCCACTTTGGCCGCCGCGGTATTCGCATCGTCCGGGTCCCGATTTTTCATCCGGATCATCGGGTCGGGTCTGGAGATCTACTTGATGGCGGTTATGGGGCTTGGCCTGGTTGTCTCGATCCTGGAGGAGAGGTACGGCTGGGAAGCGATCCGGGTCGGGTCGGGTTTGATGGCGGGTAAGAGGCTGTGCGCGTGGGTGTTGTCGGGTTCGTTCGTGATGGTTACGGCGGTGATTGCAAGGAAGCTGGAGGATGTGATGGACGGTCAGGATTTGATGGAGCAGTCGTCGACGGGAACAATGACGAGAGTCGTGGTCGGTATTGAGGAGAAATTTGGGTGGGTGATTTTGTACGGGTTGGTTGTGCTTTGGGGCTATGTTGTTACCTCGGTTTTTTACTGCGAGTGTAGGAAACACCATGTAATTAATCTCCACGAAACTGCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

33.65

Weight (kDa)

9.43

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16850
fragaria_vesca FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180
malus_domestica MD13G1261300.v1.1
prunus_persica Prupe.1G096000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0006011
rosa_laevigata RLG00000031383
rosa_multiflora Rmu_sc0002694.1_g000007
rosa_rugosa Rorug04G0419200
rosa_samantha Rh5AG046700 Rh5BG045600 Rh5CG054200 Rh5DG045100
rosa_wichuraiana Rw5G004680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 758
AccII CGCG 6 cut(s) 208, 243, 443, 455, 488, 662
AccIII TCCGGA 1 cut(s) 522
AclWI GGATC 4 cut(s) 354, 533, 583, 613
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 1 cut(s) 800
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 3 cut(s) 458, 605, 821
AfiI CCNNNNNNNGG 1 cut(s) 478
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 4 cut(s) 195, 222, 576, 591
AluBI AGCT 3 cut(s) 274, 405, 715
AluI AGCT 3 cut(s) 274, 405, 715
Alw26I GTCTC 1 cut(s) 589
AlwI GGATC 4 cut(s) 354, 533, 583, 613
AlwNI CAGNNNCTG 1 cut(s) 432
Ama87I CYCGRG 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 522
AoxI GGCC 4 cut(s) 198, 216, 480, 574
ApoI RAATTY 1 cut(s) 800
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AseI ATTAAT 1 cut(s) 894
AspLEI GCGC 3 cut(s) 210, 445, 662
AspS9I GGNCC 3 cut(s) 199, 217, 507
AsuC2I CCSGG 2 cut(s) 505, 623
AsuHPI GGTGA 6 cut(s) 52, 301, 313, 322, 712, 823
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 507
BbsI GAAGAC 2 cut(s) 14, 163
BccI CCATC 6 cut(s) 183, 550, 634, 682, 721, 739
BceAI ACGGC 5 cut(s) 236, 311, 377, 622, 711
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 4 cut(s) 197, 224, 578, 593
BcnI CCSGG 2 cut(s) 505, 623
BcoDI GTCTC 1 cut(s) 589
BglI GCCNNNNNGGC 1 cut(s) 197
BglII AGATCT 1 cut(s) 546
BisI GCNGC 3 cut(s) 390, 483, 486
BlsI GCNGC 3 cut(s) 391, 484, 487
Bme1390I CCNGG 6 cut(s) 197, 224, 505, 578, 593, 623
Bme18I GGWCC 1 cut(s) 507
BmeT110I CYCGRG 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 3 cut(s) 199, 217, 507
BmiI GGNNCC 3 cut(s) 201, 508, 509
BmrFI CCNGG 6 cut(s) 197, 224, 505, 578, 593, 623
BmsI GCATC 3 cut(s) 276, 444, 506
BoxI GACNNNNGTC 1 cut(s) 776
BpiI GAAGAC 2 cut(s) 14, 163
BpmI CTGGAG 4 cut(s) 427, 563, 614, 737
BpuMI CCSGG 2 cut(s) 505, 623
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 4 cut(s) 195, 352, 486, 855
BsaWI WCCGGW 1 cut(s) 522
BsaXI ACNNNNNCTCC 4 cut(s) 587, 617, 740, 770
Bsc4I CCNNNNNNNGG 1 cut(s) 478
BseAI TCCGGA 1 cut(s) 522
BseBI CCWGG 4 cut(s) 197, 224, 578, 593
BseDI CCNNGG 4 cut(s) 195, 352, 486, 855
BseGI GGATG 2 cut(s) 519, 727
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMII CTCAG 1 cut(s) 56
BseRI GAGGAG 8 cut(s) 113, 116, 136, 266, 362, 437, 611, 809
BseYI CCCAGC 1 cut(s) 609
Bsh1236I CGCG 6 cut(s) 208, 243, 443, 455, 488, 662
BshFI GGCC 4 cut(s) 200, 218, 482, 576
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 3 cut(s) 504, 523, 622
BsiWI CGTACG 1 cut(s) 456
BslFI GGGAC 4 cut(s) 169, 223, 452, 493
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 1 cut(s) 589
BsmFI GGGAC 4 cut(s) 169, 223, 452, 493
BsnI GGCC 4 cut(s) 200, 218, 482, 576
BsoBI CYCGRG 1 cut(s) 179
Bsp13I TCCGGA 1 cut(s) 522
Bsp143I GATC 6 cut(s) 42, 359, 525, 546, 588, 618
BspANI GGCC 4 cut(s) 200, 218, 482, 576
BspCNI CTCAG 1 cut(s) 57
BspEI TCCGGA 1 cut(s) 522
BspFNI CGCG 6 cut(s) 208, 243, 443, 455, 488, 662
BspLI GGNNCC 3 cut(s) 201, 508, 509
BspPI GGATC 4 cut(s) 354, 533, 583, 613
BspQI GCTCTTC 1 cut(s) 266
BssECI CCNNGG 4 cut(s) 195, 352, 486, 855
BssMI GATC 6 cut(s) 42, 359, 525, 546, 588, 618
BssNI GRCGYC 1 cut(s) 249
Bst2UI CCWGG 4 cut(s) 197, 224, 578, 593
Bst4CI ACNGT 1 cut(s) 734
Bst6I CTCTTC 4 cut(s) 134, 266, 305, 455
BstACI GRCGYC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 65
BstDSI CCRYGG 2 cut(s) 352, 486
BstF5I GGATG 2 cut(s) 519, 727
BstFNI CGCG 6 cut(s) 208, 243, 443, 455, 488, 662
BstHHI GCGC 3 cut(s) 210, 445, 662
BstKTI GATC 6 cut(s) 45, 362, 528, 549, 591, 621
BstMAI GTCTC 1 cut(s) 589
BstMBI GATC 6 cut(s) 42, 359, 525, 546, 588, 618
BstMWI GCNNNNNNNGC 4 cut(s) 197, 332, 494, 704
BstNI CCWGG 4 cut(s) 197, 224, 578, 593
BstPAI GACNNNNGTC 1 cut(s) 776
BstSCI CCNGG 6 cut(s) 195, 222, 503, 576, 591, 621
BstUI CGCG 6 cut(s) 208, 243, 443, 455, 488, 662
BstV2I GAAGAC 2 cut(s) 14, 163
BstX2I RGATCY 2 cut(s) 359, 546
BstYI RGATCY 2 cut(s) 359, 546
BsuRI GGCC 4 cut(s) 200, 218, 482, 576
BtgI CCRYGG 2 cut(s) 352, 486
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 2 cut(s) 519, 727
Cac8I GCNNGC 1 cut(s) 220
CaiI CAGNNNCTG 1 cut(s) 432
CfoI GCGC 3 cut(s) 210, 445, 662
Cfr13I GGNCC 3 cut(s) 199, 217, 507
Cfr42I CCGCGG 1 cut(s) 489
CseI GACGC 2 cut(s) 257, 418
Csp6I GTAC 3 cut(s) 457, 604, 820
CviAII CATG 1 cut(s) 887
CviQI GTAC 3 cut(s) 457, 604, 820
DdeI CTNAG 1 cut(s) 65
DpnI GATC 6 cut(s) 44, 361, 527, 548, 590, 620
DpnII GATC 6 cut(s) 42, 359, 525, 546, 588, 618
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 4 cut(s) 134, 266, 305, 455
EarI CTCTTC 4 cut(s) 134, 266, 305, 455
Eco47I GGWCC 1 cut(s) 507
Eco88I CYCGRG 1 cut(s) 179
EcoO109I RGGNCCY 2 cut(s) 199, 507
EcoRII CCWGG 4 cut(s) 195, 222, 576, 591
FaeI CATG 1 cut(s) 890
FaiI YATR 3 cut(s) 566, 846, 888
FaqI GGGAC 4 cut(s) 169, 223, 452, 493
FatI CATG 1 cut(s) 886
FauI CCCGC 3 cut(s) 227, 248, 637
FblI GTMKAC 1 cut(s) 758
Fnu4HI GCNGC 3 cut(s) 390, 483, 486
FokI GGATG 2 cut(s) 506, 734
Fsp4HI GCNGC 3 cut(s) 390, 483, 486
GlaI GCGC 3 cut(s) 209, 444, 661
GluI GCNGC 3 cut(s) 390, 483, 486
GsaI CCCAGC 1 cut(s) 613
GsuI CTGGAG 4 cut(s) 427, 563, 614, 737
HaeIII GGCC 4 cut(s) 200, 218, 482, 576
HapII CCGG 3 cut(s) 504, 523, 622
HgaI GACGC 2 cut(s) 257, 418
HhaI GCGC 3 cut(s) 210, 445, 662
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 1 cut(s) 890
Hin6I GCGC 3 cut(s) 208, 443, 660
HinP1I GCGC 3 cut(s) 208, 443, 660
HincII GTYRAC 1 cut(s) 759
HindII GTYRAC 1 cut(s) 759
HinfI GANTC 5 cut(s) 10, 47, 182, 236, 777
HpaII CCGG 3 cut(s) 504, 523, 622
HphI GGTGA 6 cut(s) 52, 301, 313, 322, 712, 823
Hpy166II GTNNAC 1 cut(s) 759
Hpy8I GTNNAC 1 cut(s) 759
Hpy99I CGWCG 4 cut(s) 248, 251, 760, 763
HpyAV CCTTC 3 cut(s) 226, 304, 427
HpyCH4III ACNGT 1 cut(s) 734
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 2 cut(s) 435, 707
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 332, 494, 704
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 168
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 1 cut(s) 890
HspAI GCGC 3 cut(s) 208, 443, 660
KflI GGGWCCC 1 cut(s) 507
Kpn2I TCCGGA 1 cut(s) 522
KspI CCGCGG 1 cut(s) 489
Kzo9I GATC 6 cut(s) 42, 359, 525, 546, 588, 618
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 4 cut(s) 279, 408, 450, 748
LweI GCATC 3 cut(s) 276, 444, 506
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 4 cut(s) 319, 328, 691, 850
MalI GATC 6 cut(s) 44, 361, 527, 548, 590, 620
MboI GATC 6 cut(s) 42, 359, 525, 546, 588, 618
MboII GAAGA 7 cut(s) 14, 121, 163, 253, 292, 369, 442
MflI RGATCY 2 cut(s) 359, 546
MluCI AATT 2 cut(s) 800, 891
MlyI GAGTC 5 cut(s) 4, 41, 191, 245, 786
MmeI TCCRAC 1 cut(s) 38
MroI TCCGGA 1 cut(s) 522
MseI TTAA 2 cut(s) 30, 894
MspA1I CMGCKG 2 cut(s) 405, 488
MspI CCGG 3 cut(s) 504, 523, 622
MspR9I CCNGG 6 cut(s) 197, 224, 505, 578, 593, 623
MvaI CCWGG 4 cut(s) 197, 224, 578, 593
MvnI CGCG 6 cut(s) 208, 243, 443, 455, 488, 662
MwoI GCNNNNNNNGC 4 cut(s) 197, 332, 494, 704
NciI CCSGG 2 cut(s) 505, 623
NdeII GATC 6 cut(s) 42, 359, 525, 546, 588, 618
NlaIII CATG 1 cut(s) 890
NlaIV GGNNCC 3 cut(s) 201, 508, 509
NmuCI GTSAC 2 cut(s) 319, 328
PaeR7I CTCGAG 1 cut(s) 179
PciSI GCTCTTC 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 426
Pfl23II CGTACG 1 cut(s) 456
PflFI GACNNNGTC 1 cut(s) 50
PfoI TCCNGGA 1 cut(s) 591
PkrI GCNGC 3 cut(s) 391, 484, 487
PleI GAGTC 5 cut(s) 4, 41, 190, 244, 785
PpsI GAGTC 5 cut(s) 4, 41, 190, 244, 785
PpuMI RGGWCCY 1 cut(s) 507
PshAI GACNNNNGTC 1 cut(s) 776
PshBI ATTAAT 1 cut(s) 894
Psp5II RGGWCCY 1 cut(s) 507
Psp6I CCWGG 4 cut(s) 195, 222, 576, 591
PspFI CCCAGC 1 cut(s) 609
PspGI CCWGG 4 cut(s) 195, 222, 576, 591
PspLI CGTACG 1 cut(s) 456
PspN4I GGNNCC 3 cut(s) 201, 508, 509
PspPI GGNCC 3 cut(s) 199, 217, 507
PspPPI RGGWCCY 1 cut(s) 507
PstNI CAGNNNCTG 1 cut(s) 432
PsuI RGATCY 2 cut(s) 359, 546
PsyI GACNNNGTC 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 405
RsaI GTAC 3 cut(s) 458, 605, 821
RsaNI GTAC 3 cut(s) 457, 604, 820
SacII CCGCGG 1 cut(s) 489
SalI GTCGAC 1 cut(s) 757
SapI GCTCTTC 1 cut(s) 266
SaqAI TTAA 2 cut(s) 30, 894
SatI GCNGC 3 cut(s) 390, 483, 486
Sau3AI GATC 6 cut(s) 42, 359, 525, 546, 588, 618
Sau96I GGNCC 3 cut(s) 199, 217, 507
SchI GAGTC 5 cut(s) 4, 41, 191, 245, 786
ScrFI CCNGG 6 cut(s) 197, 224, 505, 578, 593, 623
SetI ASST 8 cut(s) 171, 228, 276, 341, 407, 605, 717, 857
SfaNI GCATC 3 cut(s) 276, 444, 506
Sfr274I CTCGAG 1 cut(s) 179
Sfr303I CCGCGG 1 cut(s) 489
SgrBI CCGCGG 1 cut(s) 489
SgrDI CGTCGACG 1 cut(s) 757
SinI GGWCC 1 cut(s) 507
SlaI CTCGAG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 2 cut(s) 800, 891
StyD4I CCNGG 6 cut(s) 195, 222, 503, 576, 591, 621
TaaI ACNGT 1 cut(s) 734
TaiI ACGT 1 cut(s) 171
TaqI TCGA 5 cut(s) 45, 180, 213, 587, 758
TasI AATT 2 cut(s) 800, 891
TauI GCSGC 3 cut(s) 392, 485, 488
Tru1I TTAA 2 cut(s) 30, 894
Tru9I TTAA 2 cut(s) 30, 894
TseFI GTSAC 2 cut(s) 319, 328
Tsp45I GTSAC 2 cut(s) 319, 328
TspDTI ATGAA 1 cut(s) 508
TspGWI ACGGA 4 cut(s) 40, 307, 365, 369
Tth111I GACNNNGTC 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 507
VspI ATTAAT 1 cut(s) 894
XapI RAATTY 1 cut(s) 800
XcmI CCANNNNNNNNNTGG 1 cut(s) 908
XhoI CTCGAG 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.