MD13G1261300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011685
Physical Location & Seq
Forward (+)
32738162 .. 32739100
939 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1261300.v1.1.491

Sequence Viewer

Length: 939 bp
ATGTCGGAAACAGACGGCGTCTTCTCCCACGATCACCGATCAACGATTGTCAAGGTTCTCCTCGATTCCCTCAAGATTTTCCAAAAAAACAAACTGACTTTCGTTTCCATTTTTGCCCTCACGACCCTCCCGCTTTCCCTTCTCCTCTTCTCCCTCTCCCTCTCCTCGCACCCCCTCAAATCCCACATCTACCACCTTGAATCCCTCGCACGCCTCGCCCCCACGCGATTCGAGGCCCGCCAGGTCTGGAAGGAGTCCCGCGACGACGCCATCTCGCTCCTCCGCATCAAGGTCGTCTTCTTCTTCCCCTCCTACGCCCTCTCACTACTCGCTTCCATCGCCGCCGTGACAGCCGCCTCGACATCAATCCATGGAAAACGCCCCACTCTCCGCTCATCCCTTAACGCCGTCAAGATCACTTGGAGAAGGCCGTTAGTCACGTCCATCTGTATCTACGCGCTGTCGATAGCGTCCGCACTAGTGCTCCGCACTTTGTCAACTGTATTCAATTCGTCCTGGTCCAGATTGGTCATCATGGTTCTCGGGTCGGGTCTGGAAATATACCTGATGGGGATGATGGGCCTGGGGCTAGTGGCGTCGATTTTGGAAGAGAGGTACGGGTGGGATGCAATTCGGGTCGGGTGGGAGTTGATGGCGGGTAAGAAGCTATGCGGGTGGGTGATGTCGGGCATGTTCGTGTTGTTTACGTGGGCGGTTGCGAGGAAGCTGGAGGAAGTGATGGATGGTGAGGATTTGATGGAGGGATCATCGACGGCGACGCTGACGAGGGTGGTGGTGGGCATTGAGGATAAATTGGGTTGGGTAATTTTGTACGGGTTAGTGGTGCTTTGGGGGTACGTTGTTACCACGGTTTTTTACTGCGACTGTAGGAAACGCCACGTAAGTGGAGGTGGTGAAAATGAGGACGGCCCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

34.65

Weight (kDa)

9.0

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16850
fragaria_vesca FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180
malus_domestica MD13G1261300.v1.1
prunus_persica Prupe.1G096000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0006011
rosa_laevigata RLG00000031383
rosa_multiflora Rmu_sc0002694.1_g000007
rosa_rugosa Rorug04G0419200
rosa_samantha Rh5AG046700 Rh5BG045600 Rh5CG054200 Rh5DG045100
rosa_wichuraiana Rw5G004680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 393
AccII CGCG 3 cut(s) 226, 261, 458
AclWI GGATC 1 cut(s) 772
AcyI GRCGYC 3 cut(s) 18, 267, 596
AfaI GTAC 3 cut(s) 617, 833, 857
AfiI CCNNNNNNNGG 1 cut(s) 289
AgsI TTSAA 2 cut(s) 200, 508
AhlI ACTAGT 1 cut(s) 478
AjiI CACGTC 1 cut(s) 441
AjnI CCWGG 3 cut(s) 240, 515, 582
AleI CACNNNNGTG 1 cut(s) 903
AluBI AGCT 2 cut(s) 667, 727
AluI AGCT 2 cut(s) 667, 727
Alw21I GWGCWC 1 cut(s) 486
AlwI GGATC 1 cut(s) 772
Ama87I CYCGRG 1 cut(s) 542
AoxI GGCC 4 cut(s) 234, 428, 580, 928
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 4 cut(s) 235, 519, 580, 929
AsuHPI GGTGA 4 cut(s) 26, 691, 758, 926
AvaI CYCGRG 1 cut(s) 542
AvaII GGWCC 1 cut(s) 519
BbsI GAAGAC 2 cut(s) 13, 289
Bbv12I GWGCWC 1 cut(s) 486
BccI CCATC 9 cut(s) 278, 344, 452, 562, 571, 646, 733, 737, 751
BceAI ACGGC 5 cut(s) 31, 329, 392, 415, 789
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciT130I CCWGG 3 cut(s) 242, 517, 584
BcuI ACTAGT 1 cut(s) 478
BfaI CTAG 2 cut(s) 479, 590
BfmI CTRYAG 1 cut(s) 886
BisI GCNGC 2 cut(s) 342, 354
BlsI GCNGC 2 cut(s) 343, 355
Bme1390I CCNGG 3 cut(s) 242, 517, 584
Bme18I GGWCC 1 cut(s) 519
BmeT110I CYCGRG 1 cut(s) 542
BmgBI CACGTC 1 cut(s) 441
BmgT120I GGNCC 4 cut(s) 235, 519, 580, 929
BmrFI CCNGG 3 cut(s) 242, 517, 584
BmsI GCATC 2 cut(s) 294, 616
BpiI GAAGAC 2 cut(s) 13, 289
BpmI CTGGAG 1 cut(s) 749
BpuEI CTTGAG 1 cut(s) 56
BsaAI YACGTR 2 cut(s) 708, 901
BsaHI GRCGYC 3 cut(s) 18, 267, 596
BsaJI CCNNGG 3 cut(s) 370, 583, 867
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 1 cut(s) 289
BseBI CCWGG 3 cut(s) 242, 517, 584
BseDI CCNNGG 3 cut(s) 370, 583, 867
BseGI GGATG 4 cut(s) 395, 579, 631, 748
BseLI CCNNNNNNNGG 1 cut(s) 289
BseRI GAGGAG 4 cut(s) 50, 134, 154, 269
Bsh1236I CGCG 3 cut(s) 226, 261, 458
BshFI GGCC 4 cut(s) 236, 430, 582, 930
BsiHKAI GWGCWC 1 cut(s) 486
BsiHKCI CYCGRG 1 cut(s) 542
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 241
BsnI GGCC 4 cut(s) 236, 430, 582, 930
BsoBI CYCGRG 1 cut(s) 542
Bsp1286I GDGCHC 1 cut(s) 486
Bsp143I GATC 4 cut(s) 31, 38, 414, 764
Bsp19I CCATGG 1 cut(s) 370
BspANI GGCC 4 cut(s) 236, 430, 582, 930
BspFNI CGCG 3 cut(s) 226, 261, 458
BspPI GGATC 1 cut(s) 772
BsrBI CCGCTC 1 cut(s) 393
BssECI CCNNGG 3 cut(s) 370, 583, 867
BssMI GATC 4 cut(s) 31, 38, 414, 764
BssNI GRCGYC 3 cut(s) 18, 267, 596
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 3 cut(s) 242, 517, 584
Bst4CI ACNGT 3 cut(s) 502, 871, 887
Bst6I CTCTTC 2 cut(s) 152, 603
BstACI GRCGYC 3 cut(s) 18, 267, 596
BstBAI YACGTR 2 cut(s) 708, 901
BstC8I GCNNGC 2 cut(s) 211, 238
BstDSI CCRYGG 2 cut(s) 370, 867
BstF5I GGATG 4 cut(s) 395, 579, 631, 748
BstFNI CGCG 3 cut(s) 226, 261, 458
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 4 cut(s) 34, 41, 417, 767
BstMBI GATC 4 cut(s) 31, 38, 414, 764
BstMWI GCNNNNNNNGC 3 cut(s) 215, 338, 350
BstNI CCWGG 3 cut(s) 242, 517, 584
BstNSI RCATGY 1 cut(s) 694
BstSCI CCNGG 3 cut(s) 240, 515, 582
BstSFI CTRYAG 1 cut(s) 886
BstUI CGCG 3 cut(s) 226, 261, 458
BstV2I GAAGAC 2 cut(s) 13, 289
BstXI CCANNNNNNTGG 1 cut(s) 905
BsuRI GGCC 4 cut(s) 236, 430, 582, 930
BtgI CCRYGG 2 cut(s) 370, 867
BtgZI GCGATG 1 cut(s) 322
BtrI CACGTC 1 cut(s) 441
BtsCI GGATG 4 cut(s) 395, 579, 631, 748
Cac8I GCNNGC 2 cut(s) 211, 238
CfoI GCGC 1 cut(s) 460
Cfr13I GGNCC 4 cut(s) 235, 519, 580, 929
CseI GACGC 5 cut(s) 7, 275, 459, 585, 787
Csp6I GTAC 3 cut(s) 616, 832, 856
CviAII CATG 3 cut(s) 371, 535, 691
CviJI RGCY 8 cut(s) 236, 353, 430, 582, 589, 667, 727, 930
CviKI_1 RGCY 8 cut(s) 236, 353, 430, 582, 589, 667, 727, 930
CviQI GTAC 3 cut(s) 616, 832, 856
DpnI GATC 4 cut(s) 33, 40, 416, 766
DpnII GATC 4 cut(s) 31, 38, 414, 764
Eam1104I CTCTTC 2 cut(s) 152, 603
EarI CTCTTC 2 cut(s) 152, 603
Eco130I CCWWGG 1 cut(s) 370
Eco47I GGWCC 1 cut(s) 519
Eco88I CYCGRG 1 cut(s) 542
EcoRII CCWGG 3 cut(s) 240, 515, 582
EcoT14I CCWWGG 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 3 cut(s) 374, 538, 694
FaiI YATR 5 cut(s) 372, 536, 562, 670, 692
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FaqI GGGAC 1 cut(s) 241
FatI CATG 3 cut(s) 370, 534, 690
FauI CCCGC 5 cut(s) 138, 245, 266, 649, 665
Fnu4HI GCNGC 2 cut(s) 342, 354
FokI GGATG 4 cut(s) 382, 586, 638, 755
Fsp4HI GCNGC 2 cut(s) 342, 354
FspBI CTAG 2 cut(s) 479, 590
GlaI GCGC 1 cut(s) 459
GluI GCNGC 2 cut(s) 342, 354
GsuI CTGGAG 1 cut(s) 749
HaeIII GGCC 4 cut(s) 236, 430, 582, 930
HgaI GACGC 5 cut(s) 7, 275, 459, 585, 787
HhaI GCGC 1 cut(s) 460
Hin1I GRCGYC 3 cut(s) 18, 267, 596
Hin1II CATG 3 cut(s) 374, 538, 694
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HinfI GANTC 4 cut(s) 65, 200, 228, 254
HphI GGTGA 4 cut(s) 26, 691, 758, 926
Hpy166II GTNNAC 2 cut(s) 498, 705
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 6 cut(s) 73, 121, 247, 412, 522, 554
Hpy8I GTNNAC 2 cut(s) 498, 705
Hpy99I CGWCG 5 cut(s) 266, 269, 601, 775, 781
HpyAV CCTTC 3 cut(s) 149, 244, 420
HpyCH4III ACNGT 3 cut(s) 502, 871, 887
HpyCH4IV ACGT 4 cut(s) 440, 707, 858, 900
HpyCH4V TGCA 1 cut(s) 629
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 338, 350
HpySE526I ACGT 4 cut(s) 440, 707, 858, 900
Hsp92I GRCGYC 3 cut(s) 18, 267, 596
Hsp92II CATG 3 cut(s) 374, 538, 694
HspAI GCGC 1 cut(s) 458
Kzo9I GATC 4 cut(s) 31, 38, 414, 764
LmnI GCTCC 2 cut(s) 282, 489
LweI GCATC 2 cut(s) 294, 616
MaeI CTAG 2 cut(s) 479, 590
MaeII ACGT 4 cut(s) 440, 707, 858, 900
MaeIII GTNAC 3 cut(s) 346, 436, 862
MalI GATC 4 cut(s) 33, 40, 416, 766
MbiI CCGCTC 1 cut(s) 393
MboI GATC 4 cut(s) 31, 38, 414, 764
MboII GAAGA 6 cut(s) 13, 139, 289, 292, 295, 620
MhlI GDGCHC 1 cut(s) 486
MluCI AATT 4 cut(s) 508, 630, 812, 825
MlyI GAGTC 1 cut(s) 263
MseI TTAA 1 cut(s) 402
MslI CAYNNNNRTG 2 cut(s) 695, 903
MspR9I CCNGG 3 cut(s) 242, 517, 584
MvaI CCWGG 3 cut(s) 242, 517, 584
MvnI CGCG 3 cut(s) 226, 261, 458
MwoI GCNNNNNNNGC 3 cut(s) 215, 338, 350
NcoI CCATGG 1 cut(s) 370
NdeII GATC 4 cut(s) 31, 38, 414, 764
NlaIII CATG 3 cut(s) 374, 538, 694
NmuCI GTSAC 2 cut(s) 346, 436
NspI RCATGY 1 cut(s) 694
OliI CACNNNNGTG 1 cut(s) 903
PfeI GAWTC 3 cut(s) 65, 200, 228
PflFI GACNNNGTC 1 cut(s) 17
PkrI GCNGC 2 cut(s) 343, 355
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
Ppu21I YACGTR 2 cut(s) 708, 901
Psp6I CCWGG 3 cut(s) 240, 515, 582
PspGI CCWGG 3 cut(s) 240, 515, 582
PspPI GGNCC 4 cut(s) 235, 519, 580, 929
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 3 cut(s) 617, 833, 857
RsaNI GTAC 3 cut(s) 616, 832, 856
RseI CAYNNNNRTG 2 cut(s) 695, 903
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 2 cut(s) 342, 354
Sau3AI GATC 4 cut(s) 31, 38, 414, 764
Sau96I GGNCC 4 cut(s) 235, 519, 580, 929
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 3 cut(s) 242, 517, 584
SduI GDGCHC 1 cut(s) 486
SfaNI GCATC 2 cut(s) 294, 616
SfcI CTRYAG 1 cut(s) 886
SinI GGWCC 1 cut(s) 519
SmiMI CAYNNNNRTG 2 cut(s) 695, 903
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SpeI ACTAGT 1 cut(s) 478
Sse9I AATT 4 cut(s) 508, 630, 812, 825
SspMI CTAG 2 cut(s) 479, 590
StyD4I CCNGG 3 cut(s) 240, 515, 582
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 3 cut(s) 502, 871, 887
TaiI ACGT 4 cut(s) 443, 710, 861, 903
TaqI TCGA 6 cut(s) 63, 231, 359, 464, 599, 770
TasI AATT 4 cut(s) 508, 630, 812, 825
TauI GCSGC 2 cut(s) 344, 356
TfiI GAWTC 3 cut(s) 65, 200, 228
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TseFI GTSAC 2 cut(s) 346, 436
Tsp45I GTSAC 2 cut(s) 346, 436
Tth111I GACNNNGTC 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 519
XceI RCATGY 1 cut(s) 694
XspI CTAG 2 cut(s) 479, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.