FvH4_3g13180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011685
Physical Location & Seq
Reverse (-)
7865197 .. 7868215
3019 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13180.t4

Sequence Viewer

Length: 855 bp
ATGTCGGAAAGAGACGGCTCCTCCTCCCATCACCACCACCACGATCCTCCGAAGTCGACTCTTGTTCTTCTCAAGCAAGTCCTCCTCGATTCCCTCAAGATCATCCTCAGAAACCCACAAACATTCCTTTCCATTTTTGCCCTCACCACCCTCCCCCTCTCCCTCCTCCTCTTCTCCCTCTCCCTCTCCTCCCACCCCATCAAATCCCACGTCTACCACCTCGAGTCCCTCGCCTCCCAAGCCCCCACGCGCTTCGAGGCGCGTCAGGTCTGGAAGGAGTCCCGCGACGACGCCGTTTCGCTCCTCCTCCGCATCAAGCTCCTCTACTTCCTCCCCTCCTACCTCCTCTCCCTCCTCGCCTCCCTCGCCGCCGTCACCGCCGCCTCCTCAGCATTTCACGGCAAAGCCCCTACTCTCCGCTCCTCGCTCGCCGCCGTCAAGTCCACCTGGCACAGACCCTTCGCCACCAGCATCTGCGTCTACGCGCTCCTGATCGCGTACGCTCTCGTCCCACGCACTTTGGCTTTGGCTTTCGCCTCGCCAGGGTCGAGATTGCTCGTGCGGCTTCTCGGGTCGGGTCTGGAGATTTATTTGATGGCGGTTACGGGGCTTGCTTTGGTTGTGTCGATCCTGGAGGAGAGGTTTGGCTGGGACGCGATCCGAGTAGGGTCGGGTTTGATGGTGGGTAAGAGGATGTGCGGGTGGGTGTTGTCGGGTTTGTTGGTGATGATTACGGCGGTGATTGCGAGGAAGCTTGAGGAAGTGATGGACGGTCAGGATTTGATGGAGAGGTCGTCGACGGGAACAATGACGAGAGTCGTCGTGGGCATTGGAGACAAATTTGGAACAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

285

Amino Acids

30.99

Weight (kDa)

9.65

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16850
fragaria_vesca FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180
malus_domestica MD13G1261300.v1.1
prunus_persica Prupe.1G096000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0006011
rosa_laevigata RLG00000031383
rosa_multiflora Rmu_sc0002694.1_g000007
rosa_rugosa Rorug04G0419200
rosa_samantha Rh5AG046700 Rh5BG045600 Rh5CG054200 Rh5DG045100
rosa_wichuraiana Rw5G004680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 420
AccI GTMKAC 4 cut(s) 56, 213, 480, 797
AccII CGCG 6 cut(s) 250, 262, 285, 485, 497, 656
AclWI GGATC 3 cut(s) 38, 622, 652
AcsI RAATTY 1 cut(s) 839
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 1 cut(s) 500
AfiI CCNNNNNNNGG 1 cut(s) 543
AjiI CACGTC 1 cut(s) 211
AjnI CCWGG 3 cut(s) 446, 541, 630
AluBI AGCT 2 cut(s) 319, 754
AluI AGCT 2 cut(s) 319, 754
Alw26I GTCTC 2 cut(s) 6, 828
AlwI GGATC 3 cut(s) 38, 622, 652
AlwNI CAGNNNCTG 1 cut(s) 474
Ama87I CYCGRG 2 cut(s) 221, 569
ApoI RAATTY 1 cut(s) 839
ArsI GACNNNNNNTTYG 2 cut(s) 195, 227
AspLEI GCGC 3 cut(s) 252, 262, 487
AsuHPI GGTGA 5 cut(s) 23, 136, 367, 736, 751
AvaI CYCGRG 2 cut(s) 221, 569
BauI CACGAG 1 cut(s) 557
BbvCI CCTCAGC 1 cut(s) 388
BccI CCATC 6 cut(s) 36, 206, 589, 673, 760, 778
BceAI ACGGC 6 cut(s) 31, 278, 356, 415, 419, 750
BciT130I CCWGG 3 cut(s) 448, 543, 632
BcoDI GTCTC 2 cut(s) 6, 828
BisI GCNGC 4 cut(s) 369, 381, 432, 563
BlsI GCNGC 4 cut(s) 370, 382, 433, 564
Bme1390I CCNGG 3 cut(s) 448, 543, 632
BmeT110I CYCGRG 2 cut(s) 221, 569
BmgBI CACGTC 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 3 cut(s) 448, 543, 632
BmsI GCATC 2 cut(s) 321, 480
BoxI GACNNNNGTC 1 cut(s) 815
BpmI CTGGAG 2 cut(s) 602, 653
Bpu10I CCTNAGC 1 cut(s) 388
BpuEI CTTGAG 3 cut(s) 56, 80, 776
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 542
BsaXI ACNNNNNCTCC 8 cut(s) 5, 35, 332, 362, 626, 656, 779, 809
Bsc4I CCNNNNNNNGG 1 cut(s) 543
BseBI CCWGG 3 cut(s) 448, 543, 632
BseDI CCNNGG 1 cut(s) 542
BseGI GGATG 2 cut(s) 102, 699
BseLI CCNNNNNNNGG 1 cut(s) 543
BseMII CTCAG 2 cut(s) 121, 402
BseYI CCCAGC 1 cut(s) 648
Bsh1236I CGCG 6 cut(s) 250, 262, 285, 485, 497, 656
BsiHKCI CYCGRG 2 cut(s) 221, 569
BsiWI CGTACG 1 cut(s) 498
BslFI GGGAC 4 cut(s) 211, 265, 494, 665
BslI CCNNNNNNNGG 1 cut(s) 543
BsmAI GTCTC 2 cut(s) 6, 828
BsmBI CGTCTC 1 cut(s) 6
BsmFI GGGAC 4 cut(s) 211, 265, 494, 665
BsoBI CYCGRG 2 cut(s) 221, 569
Bsp143I GATC 5 cut(s) 43, 99, 492, 627, 657
BspCNI CTCAG 2 cut(s) 120, 401
BspFNI CGCG 6 cut(s) 250, 262, 285, 485, 497, 656
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 3 cut(s) 38, 622, 652
BsrBI CCGCTC 1 cut(s) 420
BssECI CCNNGG 1 cut(s) 542
BssMI GATC 5 cut(s) 43, 99, 492, 627, 657
BssNI GRCGYC 1 cut(s) 291
BssSI CACGAG 1 cut(s) 557
Bst2BI CACGAG 1 cut(s) 557
Bst2UI CCWGG 3 cut(s) 448, 543, 632
Bst4CI ACNGT 1 cut(s) 773
Bst6I CTCTTC 1 cut(s) 176
BstACI GRCGYC 1 cut(s) 291
BstC8I GCNNGC 2 cut(s) 429, 612
BstDEI CTNAG 2 cut(s) 107, 388
BstF5I GGATG 2 cut(s) 102, 699
BstFNI CGCG 6 cut(s) 250, 262, 285, 485, 497, 656
BstHHI GCGC 3 cut(s) 252, 262, 487
BstKTI GATC 5 cut(s) 46, 102, 495, 630, 660
BstMAI GTCTC 2 cut(s) 6, 828
BstMBI GATC 5 cut(s) 43, 99, 492, 627, 657
BstMWI GCNNNNNNNGC 6 cut(s) 239, 365, 377, 389, 562, 743
BstNI CCWGG 3 cut(s) 448, 543, 632
BstPAI GACNNNNGTC 1 cut(s) 815
BstSCI CCNGG 3 cut(s) 446, 541, 630
BstUI CGCG 6 cut(s) 250, 262, 285, 485, 497, 656
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 2 cut(s) 102, 699
Cac8I GCNNGC 2 cut(s) 429, 612
CaiI CAGNNNCTG 1 cut(s) 474
CfoI GCGC 3 cut(s) 252, 262, 487
CseI GACGC 4 cut(s) 251, 299, 466, 662
Csp6I GTAC 1 cut(s) 499
CspCI CAANNNNNGTGG 2 cut(s) 501, 536
CviQI GTAC 1 cut(s) 499
DdeI CTNAG 2 cut(s) 107, 388
DpnI GATC 5 cut(s) 45, 101, 494, 629, 659
DpnII GATC 5 cut(s) 43, 99, 492, 627, 657
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco88I CYCGRG 2 cut(s) 221, 569
EcoRII CCWGG 3 cut(s) 446, 541, 630
Esp3I CGTCTC 1 cut(s) 6
FaqI GGGAC 4 cut(s) 211, 265, 494, 665
FauI CCCGC 2 cut(s) 290, 692
FblI GTMKAC 4 cut(s) 56, 213, 480, 797
Fnu4HI GCNGC 4 cut(s) 369, 381, 432, 563
FokI GGATG 2 cut(s) 89, 706
Fsp4HI GCNGC 4 cut(s) 369, 381, 432, 563
GlaI GCGC 3 cut(s) 251, 261, 486
GluI GCNGC 4 cut(s) 369, 381, 432, 563
GsaI CCCAGC 1 cut(s) 652
GsuI CTGGAG 2 cut(s) 602, 653
HgaI GACGC 4 cut(s) 251, 299, 466, 662
HhaI GCGC 3 cut(s) 252, 262, 487
Hin1I GRCGYC 1 cut(s) 291
Hin6I GCGC 3 cut(s) 250, 260, 485
HinP1I GCGC 3 cut(s) 250, 260, 485
HincII GTYRAC 2 cut(s) 57, 798
HindII GTYRAC 2 cut(s) 57, 798
HindIII AAGCTT 1 cut(s) 752
HinfI GANTC 5 cut(s) 58, 89, 224, 278, 816
HphI GGTGA 5 cut(s) 23, 136, 367, 736, 751
Hpy166II GTNNAC 5 cut(s) 57, 214, 444, 481, 798
Hpy188I TCNGA 4 cut(s) 7, 51, 110, 662
Hpy188III TCNNGA 6 cut(s) 97, 271, 490, 549, 581, 776
Hpy8I GTNNAC 5 cut(s) 57, 214, 444, 481, 798
Hpy99I CGWCG 5 cut(s) 290, 293, 799, 802, 824
HpyAV CCTTC 2 cut(s) 268, 469
HpyCH4III ACNGT 1 cut(s) 773
HpyCH4IV ACGT 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 6 cut(s) 239, 365, 377, 389, 562, 743
HpyF3I CTNAG 2 cut(s) 107, 388
HpySE526I ACGT 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 291
HspAI GCGC 3 cut(s) 250, 260, 485
Kzo9I GATC 5 cut(s) 43, 99, 492, 627, 657
LmnI GCTCC 5 cut(s) 23, 306, 324, 425, 492
LweI GCATC 2 cut(s) 321, 480
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 2 cut(s) 373, 601
MalI GATC 5 cut(s) 45, 101, 494, 629, 659
MbiI CCGCTC 1 cut(s) 420
MboI GATC 5 cut(s) 43, 99, 492, 627, 657
MboII GAAGA 2 cut(s) 59, 163
MluCI AATT 1 cut(s) 839
MlyI GAGTC 4 cut(s) 52, 233, 287, 825
MspR9I CCNGG 3 cut(s) 448, 543, 632
MvaI CCWGG 3 cut(s) 448, 543, 632
MvnI CGCG 6 cut(s) 250, 262, 285, 485, 497, 656
MwoI GCNNNNNNNGC 6 cut(s) 239, 365, 377, 389, 562, 743
NdeII GATC 5 cut(s) 43, 99, 492, 627, 657
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 373
PaeR7I CTCGAG 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 545
PfeI GAWTC 1 cut(s) 89
Pfl23II CGTACG 1 cut(s) 498
PfoI TCCNGGA 1 cut(s) 630
PkrI GCNGC 4 cut(s) 370, 382, 433, 564
PleI GAGTC 4 cut(s) 52, 232, 286, 824
PpsI GAGTC 4 cut(s) 52, 232, 286, 824
PshAI GACNNNNGTC 1 cut(s) 815
Psp6I CCWGG 3 cut(s) 446, 541, 630
PspFI CCCAGC 1 cut(s) 648
PspGI CCWGG 3 cut(s) 446, 541, 630
PspLI CGTACG 1 cut(s) 498
PspN4I GGNNCC 1 cut(s) 19
PspXI VCTCGAGB 1 cut(s) 221
PstNI CAGNNNCTG 1 cut(s) 474
RsaI GTAC 1 cut(s) 500
RsaNI GTAC 1 cut(s) 499
SalI GTCGAC 2 cut(s) 55, 796
SatI GCNGC 4 cut(s) 369, 381, 432, 563
Sau3AI GATC 5 cut(s) 43, 99, 492, 627, 657
SchI GAGTC 4 cut(s) 52, 233, 287, 825
ScrFI CCNGG 3 cut(s) 448, 543, 632
SetI ASST 9 cut(s) 213, 222, 270, 321, 345, 449, 644, 756, 794
SfaNI GCATC 2 cut(s) 321, 480
Sfr274I CTCGAG 1 cut(s) 221
SgrDI CGTCGACG 1 cut(s) 796
SlaI CTCGAG 1 cut(s) 221
SmlI CTYRAG 4 cut(s) 71, 95, 221, 755
SmoI CTYRAG 4 cut(s) 71, 95, 221, 755
Sse9I AATT 1 cut(s) 839
StyD4I CCNGG 3 cut(s) 446, 541, 630
TaaI ACNGT 1 cut(s) 773
TaiI ACGT 1 cut(s) 213
TaqI TCGA 7 cut(s) 56, 87, 222, 255, 548, 626, 797
TasI AATT 1 cut(s) 839
TauI GCSGC 4 cut(s) 371, 383, 434, 565
TfiI GAWTC 1 cut(s) 89
TseFI GTSAC 1 cut(s) 373
Tsp45I GTSAC 1 cut(s) 373
XapI RAATTY 1 cut(s) 839
XhoI CTCGAG 1 cut(s) 221
XmiI GTMKAC 4 cut(s) 56, 213, 480, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.