Prupe.1G096000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011685
Physical Location & Seq
Reverse (-)
7580039 .. 7580977
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G096000.1

Sequence Viewer

Length: 939 bp
ATGTCGGAAAGAGACGGCGTCTTCTCTCACGATCAACAATCAACTGCTCTCAAAACCCTGCTCGATTCCCTCAAGATTTTCCTGAGAAACAAACTAACCTTCATTTCCATTTTTGCCCTCACGACCCTCCCACTCTCCTTCCTCCTCTTCTCCCTCTCCCTCTCCTCCCACCCGCTCAAGTCCCACATTTTCCACCTCGAGTCCCTCGCCCGCCTCGCCCCGACCCGATTCGAGGCCCGCCAAGTCTGGAAGGAATCCCGCGATGACGCCGTTTCTCTCCTCCGCATCAAGGCCATCTTCTTCCTCCCCAGCTACGCTCTCTCCCTCCTCGCCTCTGTCACCGCCGTCACCGCCACGTCATCGTCTTTCCATGGAAAACGCCCCGATCTCCGTTCCTCCCTTAATGCCGTTAAGCTCACCTGGAGGAGACCTCTGGTCACCTCCATCTGCATCTACGCGCTCTCGATCGCGTACGCTGTCGTGCCGTGGACTCTGTCGATTGTATTCAACTCGTCGTGGTCCAGATTCTTCATCCTCGTTCTCGGGTCGGGTCTCGAGATTTACCTGATGGCGGTTCTGGGCCTCGGGCTCGTCGCGTCGATTTTGGAAGAGAGGTTCGGGTGGGATGCGATCCGGGTCGGGTGGGCGTTGATGGCGGGTAAGAGGTTGTGCGGGTGGGCGTTGTCGGGTTTGTTCGTGTTCTTAACCTGGGTGGTGGCGAGGAAGCTGGAGGAAGTGATGGACGGCCAGGATTTGATGGAGGGATCATCGACGGCGACGCTGACGAGGGTGGTGGTGGGCATAGAGGATAAATTGGGTTGGGTAATTTTGTATGGGTTAGTGGTGCTCTGGGGTTACCTAGTTACCACAGTTTTTTACTGCGAGTGTAGGAAACGCCACGTAATTGGTGGTGGTGAAAATGAGAACATCACGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

34.83

Weight (kDa)

9.32

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16850
fragaria_vesca FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180
malus_domestica MD13G1261300.v1.1
prunus_persica Prupe.1G096000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0006011
rosa_laevigata RLG00000031383
rosa_multiflora Rmu_sc0002694.1_g000007
rosa_rugosa Rorug04G0419200
rosa_samantha Rh5AG046700 Rh5BG045600 Rh5CG054200 Rh5DG045100
rosa_wichuraiana Rw5G004680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 175
AccII CGCG 4 cut(s) 261, 458, 470, 596
AclWI GGATC 2 cut(s) 625, 772
AcoI YGGCCR 1 cut(s) 745
AcyI GRCGYC 2 cut(s) 18, 267
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 3 cut(s) 232, 289, 571
AgsI TTSAA 1 cut(s) 508
AhdI GACNNNNNGTC 1 cut(s) 434
AjiI CACGTC 1 cut(s) 357
AjnI CCWGG 3 cut(s) 419, 707, 747
AloI GAACNNNNNNTCC 2 cut(s) 599, 631
AluBI AGCT 3 cut(s) 312, 415, 727
AluI AGCT 3 cut(s) 312, 415, 727
Alw21I GWGCWC 1 cut(s) 849
Alw26I GTCTC 3 cut(s) 6, 421, 557
AlwI GGATC 2 cut(s) 625, 772
Ama87I CYCGRG 4 cut(s) 197, 542, 554, 584
AoxI GGCC 4 cut(s) 234, 291, 580, 745
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 3 cut(s) 235, 519, 580
AsuC2I CCSGG 1 cut(s) 635
AsuHPI GGTGA 5 cut(s) 331, 340, 409, 430, 926
AvaI CYCGRG 4 cut(s) 197, 542, 554, 584
AvaII GGWCC 1 cut(s) 519
BanII GRGCYC 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 849
BccI CCATC 6 cut(s) 302, 452, 562, 646, 733, 751
BceAI ACGGC 7 cut(s) 31, 254, 329, 392, 469, 760, 789
BciT130I CCWGG 3 cut(s) 421, 709, 749
BcnI CCSGG 1 cut(s) 635
BcoDI GTCTC 3 cut(s) 6, 421, 557
BfaI CTAG 1 cut(s) 860
Bme1390I CCNGG 4 cut(s) 421, 635, 709, 749
Bme18I GGWCC 1 cut(s) 519
BmeRI GACNNNNNGTC 1 cut(s) 434
BmeT110I CYCGRG 4 cut(s) 197, 542, 554, 584
BmgBI CACGTC 1 cut(s) 357
BmgT120I GGNCC 3 cut(s) 235, 519, 580
BmrFI CCNGG 4 cut(s) 421, 635, 709, 749
BmsI GCATC 3 cut(s) 294, 459, 616
BpiI GAAGAC 1 cut(s) 13
BplI GAGNNNNNCTC 2 cut(s) 415, 447
BpmI CTGGAG 2 cut(s) 442, 749
BpuEI CTTGAG 2 cut(s) 56, 161
BpuMI CCSGG 1 cut(s) 635
BsaAI YACGTR 1 cut(s) 901
BsaHI GRCGYC 2 cut(s) 18, 267
BsaI GGTCTC 2 cut(s) 421, 557
BsaJI CCNNGG 4 cut(s) 370, 485, 583, 708
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 289, 571
BseBI CCWGG 3 cut(s) 421, 709, 749
BseDI CCNNGG 4 cut(s) 370, 485, 583, 708
BseGI GGATG 2 cut(s) 531, 631
BseLI CCNNNNNNNGG 3 cut(s) 232, 289, 571
BseMII CTCAG 1 cut(s) 74
BseRI GAGGAG 5 cut(s) 134, 154, 269, 317, 439
BseYI CCCAGC 1 cut(s) 308
Bsh1236I CGCG 4 cut(s) 261, 458, 470, 596
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 4 cut(s) 236, 293, 582, 747
BsiEI CGRYCG 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 849
BsiHKCI CYCGRG 4 cut(s) 197, 542, 554, 584
BsiSI CCGG 1 cut(s) 634
BsiWI CGTACG 1 cut(s) 471
BslFI GGGAC 2 cut(s) 166, 187
BslI CCNNNNNNNGG 3 cut(s) 232, 289, 571
BsmAI GTCTC 3 cut(s) 6, 421, 557
BsmBI CGTCTC 1 cut(s) 6
BsmFI GGGAC 2 cut(s) 166, 187
BsnI GGCC 4 cut(s) 236, 293, 582, 747
Bso31I GGTCTC 2 cut(s) 421, 557
BsoBI CYCGRG 4 cut(s) 197, 542, 554, 584
Bsp1286I GDGCHC 2 cut(s) 591, 849
Bsp143I GATC 5 cut(s) 31, 385, 465, 630, 764
Bsp19I CCATGG 1 cut(s) 370
BspANI GGCC 4 cut(s) 236, 293, 582, 747
BspCNI CTCAG 1 cut(s) 75
BspFNI CGCG 4 cut(s) 261, 458, 470, 596
BspPI GGATC 2 cut(s) 625, 772
BspTNI GGTCTC 2 cut(s) 421, 557
BsrBI CCGCTC 1 cut(s) 175
BssECI CCNNGG 4 cut(s) 370, 485, 583, 708
BssMI GATC 5 cut(s) 31, 385, 465, 630, 764
BssNI GRCGYC 2 cut(s) 18, 267
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 3 cut(s) 421, 709, 749
Bst4CI ACNGT 2 cut(s) 871, 934
Bst6I CTCTTC 2 cut(s) 152, 603
BstACI GRCGYC 2 cut(s) 18, 267
BstBAI YACGTR 1 cut(s) 901
BstC8I GCNNGC 2 cut(s) 211, 238
BstDEI CTNAG 1 cut(s) 83
BstDSI CCRYGG 2 cut(s) 370, 485
BstEII GGTNACC 2 cut(s) 436, 854
BstF5I GGATG 2 cut(s) 531, 631
BstFNI CGCG 4 cut(s) 261, 458, 470, 596
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 5 cut(s) 34, 388, 468, 633, 767
BstMAI GTCTC 3 cut(s) 6, 421, 557
BstMBI GATC 5 cut(s) 31, 385, 465, 630, 764
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 3 cut(s) 215, 350, 653
BstNI CCWGG 3 cut(s) 421, 709, 749
BstPI GGTNACC 2 cut(s) 436, 854
BstSCI CCNGG 4 cut(s) 419, 633, 707, 747
BstUI CGCG 4 cut(s) 261, 458, 470, 596
BstV2I GAAGAC 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 905
BsuRI GGCC 4 cut(s) 236, 293, 582, 747
BtgI CCRYGG 2 cut(s) 370, 485
BtgZI GCGATG 1 cut(s) 276
BtrI CACGTC 1 cut(s) 357
BtsCI GGATG 2 cut(s) 531, 631
Cac8I GCNNGC 2 cut(s) 211, 238
CfoI GCGC 1 cut(s) 460
Cfr13I GGNCC 3 cut(s) 235, 519, 580
CseI GACGC 4 cut(s) 7, 275, 585, 787
Csp6I GTAC 1 cut(s) 472
CviAII CATG 1 cut(s) 371
CviJI RGCY 8 cut(s) 236, 293, 312, 415, 582, 589, 727, 747
CviKI_1 RGCY 8 cut(s) 236, 293, 312, 415, 582, 589, 727, 747
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 1 cut(s) 83
DpnI GATC 5 cut(s) 33, 387, 467, 632, 766
DpnII GATC 5 cut(s) 31, 385, 465, 630, 764
DriI GACNNNNNGTC 1 cut(s) 434
EaeI YGGCCR 1 cut(s) 745
Eam1104I CTCTTC 2 cut(s) 152, 603
Eam1105I GACNNNNNGTC 1 cut(s) 434
EarI CTCTTC 2 cut(s) 152, 603
Eco130I CCWWGG 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 591
Eco31I GGTCTC 2 cut(s) 421, 557
Eco47I GGWCC 1 cut(s) 519
Eco88I CYCGRG 4 cut(s) 197, 542, 554, 584
Eco91I GGTNACC 2 cut(s) 436, 854
EcoO65I GGTNACC 2 cut(s) 436, 854
EcoRII CCWGG 3 cut(s) 419, 707, 747
EcoT14I CCWWGG 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 591
ErhI CCWWGG 1 cut(s) 370
Esp3I CGTCTC 1 cut(s) 6
FaeI CATG 1 cut(s) 374
FaiI YATR 3 cut(s) 372, 803, 834
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FaqI GGGAC 2 cut(s) 166, 187
FatI CATG 1 cut(s) 370
FauI CCCGC 6 cut(s) 180, 218, 245, 266, 649, 665
FokI GGATG 2 cut(s) 518, 638
FriOI GRGCYC 1 cut(s) 591
FspBI CTAG 1 cut(s) 860
GlaI GCGC 1 cut(s) 459
GsaI CCCAGC 1 cut(s) 312
GsuI CTGGAG 2 cut(s) 442, 749
HaeIII GGCC 4 cut(s) 236, 293, 582, 747
HapII CCGG 1 cut(s) 634
HgaI GACGC 4 cut(s) 7, 275, 585, 787
HhaI GCGC 1 cut(s) 460
Hin1I GRCGYC 2 cut(s) 18, 267
Hin1II CATG 1 cut(s) 374
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HinfI GANTC 6 cut(s) 65, 200, 228, 254, 490, 525
HpaII CCGG 1 cut(s) 634
HphI GGTGA 5 cut(s) 331, 340, 409, 430, 926
Hpy166II GTNNAC 1 cut(s) 489
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 9 cut(s) 29, 73, 82, 121, 247, 463, 522, 554, 556
Hpy8I GTNNAC 1 cut(s) 489
Hpy99I CGWCG 5 cut(s) 517, 596, 601, 775, 781
HpyAV CCTTC 3 cut(s) 109, 148, 244
HpyCH4III ACNGT 2 cut(s) 871, 934
HpyCH4IV ACGT 2 cut(s) 356, 900
HpyCH4V TGCA 1 cut(s) 450
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 350, 653
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 2 cut(s) 356, 900
Hsp92I GRCGYC 2 cut(s) 18, 267
Hsp92II CATG 1 cut(s) 374
HspAI GCGC 1 cut(s) 458
Kzo9I GATC 5 cut(s) 31, 385, 465, 630, 764
LweI GCATC 3 cut(s) 294, 459, 616
MaeI CTAG 1 cut(s) 860
MaeII ACGT 2 cut(s) 356, 900
MaeIII GTNAC 5 cut(s) 337, 346, 436, 854, 862
MalI GATC 5 cut(s) 33, 387, 467, 632, 766
MbiI CCGCTC 1 cut(s) 175
MboI GATC 5 cut(s) 31, 385, 465, 630, 764
MboII GAAGA 6 cut(s) 13, 139, 289, 292, 520, 620
MhlI GDGCHC 2 cut(s) 591, 849
MluCI AATT 3 cut(s) 812, 825, 903
MlyI GAGTC 2 cut(s) 209, 484
MseI TTAA 3 cut(s) 402, 411, 704
MspI CCGG 1 cut(s) 634
MspR9I CCNGG 4 cut(s) 421, 635, 709, 749
MvaI CCWGG 3 cut(s) 421, 709, 749
MvnI CGCG 4 cut(s) 261, 458, 470, 596
MwoI GCNNNNNNNGC 3 cut(s) 215, 350, 653
NciI CCSGG 1 cut(s) 635
NcoI CCATGG 1 cut(s) 370
NdeII GATC 5 cut(s) 31, 385, 465, 630, 764
NlaIII CATG 1 cut(s) 374
NmuCI GTSAC 3 cut(s) 337, 346, 436
PaeR7I CTCGAG 2 cut(s) 197, 554
PfeI GAWTC 4 cut(s) 65, 228, 254, 525
Pfl23II CGTACG 1 cut(s) 471
PflFI GACNNNGTC 2 cut(s) 17, 493
Ple19I CGATCG 1 cut(s) 468
PleI GAGTC 2 cut(s) 208, 484
PpsI GAGTC 2 cut(s) 208, 484
Ppu21I YACGTR 1 cut(s) 901
Psp6I CCWGG 3 cut(s) 419, 707, 747
PspEI GGTNACC 2 cut(s) 436, 854
PspFI CCCAGC 1 cut(s) 308
PspGI CCWGG 3 cut(s) 419, 707, 747
PspLI CGTACG 1 cut(s) 471
PspPI GGNCC 3 cut(s) 235, 519, 580
PspXI VCTCGAGB 1 cut(s) 197
PsyI GACNNNGTC 2 cut(s) 17, 493
PvuI CGATCG 1 cut(s) 468
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
SaqAI TTAA 3 cut(s) 402, 411, 704
Sau3AI GATC 5 cut(s) 31, 385, 465, 630, 764
Sau96I GGNCC 3 cut(s) 235, 519, 580
SchI GAGTC 2 cut(s) 209, 484
ScrFI CCNGG 4 cut(s) 421, 635, 709, 749
SduI GDGCHC 2 cut(s) 591, 849
SfaNI GCATC 3 cut(s) 294, 459, 616
Sfr274I CTCGAG 2 cut(s) 197, 554
SinI GGWCC 1 cut(s) 519
SlaI CTCGAG 2 cut(s) 197, 554
SmlI CTYRAG 4 cut(s) 71, 176, 197, 554
SmoI CTYRAG 4 cut(s) 71, 176, 197, 554
Sse9I AATT 3 cut(s) 812, 825, 903
SspMI CTAG 1 cut(s) 860
StyD4I CCNGG 4 cut(s) 419, 633, 707, 747
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 2 cut(s) 871, 934
TaiI ACGT 2 cut(s) 359, 903
TaqI TCGA 8 cut(s) 63, 198, 231, 464, 497, 555, 599, 770
TasI AATT 3 cut(s) 812, 825, 903
TfiI GAWTC 4 cut(s) 65, 228, 254, 525
Tru1I TTAA 3 cut(s) 402, 411, 704
Tru9I TTAA 3 cut(s) 402, 411, 704
TseFI GTSAC 3 cut(s) 337, 346, 436
Tsp45I GTSAC 3 cut(s) 337, 346, 436
TspDTI ATGAA 2 cut(s) 91, 520
TspGWI ACGGA 1 cut(s) 380
Tth111I GACNNNGTC 2 cut(s) 17, 493
VpaK11BI GGWCC 1 cut(s) 519
XcmI CCANNNNNNNNNTGG 1 cut(s) 905
XhoI CTCGAG 2 cut(s) 197, 554
XspI CTAG 1 cut(s) 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.