Rh5DG045100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011685
Physical Location & Seq
Reverse (-)
3736463 .. 3737389
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG045100.1

Sequence Viewer

Length: 927 bp
ATGTCAACGACTCCAACTCGTCTTCTTCTCAAACAAGTCCTGATCGATTCCGTCAAGATCACCCTGAGAAACAAGCAAACATTTCTTTCCATTTTTGCCCTCACGACCCTCCCTCTCTCCCTCCTCCTCTCCTCCCTCTCCCTCTCCTCCCACCCCCTCAAATCCCACGTCTTCCATCTCGAGTCCCTCGCCTCCCAAGCCCCCACGCGCTTCGAGGCCCGCCAGGTCTGGAAGGAGTCCCGCGACGACGCCGTTTCGCTCTTCCGCATCAAGCTCCTCTACTTCCTCCCCTCCTGCCTCTTCTCCCTCACCTCCTCCGTCACCGCCGTTACCGCCACCTCATTAGCCTATCACGGAAGATCCCCAAATCTCCTCCGTTCCTCACTCGCCGCCGTCAAGTCCAACTGGAGCAGACCCTTCGCCACCAGCGTCTGCATCTACGCGCTCCTCATCGCGTACGCCCTCGTCCCCCGCACTTTGGCCGCCGCGGTATTCGCATCGTCCGGGTCCCGATTTTTCATCCGGATTATCGGGTCGGGTCTGGAGATCTACTTGATGGCGGTTATGGGGCTTGGCCTGGTCGTCTCGATCCTCGAGGAGAGGTACGGCTGGGAAGCGATCCGGGTCGGGTCGGGTTTGATGGCGGGTAAGAGGCTGTGCGGGTGGGTGTTGTCGGGTTCGTTCGTGATGGTTACGGCGGTGATTGCGAGGAAGCTGGAGGATGTGATGGACGGTCAGGATTTGATGGAGCAGTCGTCGACGGGAACAATGACGAGAGTCGTCGTGGGTATTGAGGAGAAATTTGGGTGGGTGATTTTGTATGGGTTGGTTGTGCTTTGGGGGTATGTTGTTACCTCGGTTTTTTACTGCGAGTGTAGGAAACACCATGTAATTGTAAGTAATGAAAATGAGAATGACCCGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

33.98

Weight (kDa)

9.33

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16850
fragaria_vesca FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180 FvH4_3g13180
malus_domestica MD13G1261300.v1.1
prunus_persica Prupe.1G096000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0006011
rosa_laevigata RLG00000031383
rosa_multiflora Rmu_sc0002694.1_g000007
rosa_rugosa Rorug04G0419200
rosa_samantha Rh5AG046700 Rh5BG045600 Rh5CG054200 Rh5DG045100
rosa_wichuraiana Rw5G004680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 593
AccI GTMKAC 1 cut(s) 758
AccII CGCG 5 cut(s) 208, 243, 443, 455, 488
AccIII TCCGGA 1 cut(s) 522
AclWI GGATC 3 cut(s) 354, 583, 613
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 1 cut(s) 800
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 2 cut(s) 458, 605
AfiI CCNNNNNNNGG 1 cut(s) 478
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 2 cut(s) 222, 576
AluBI AGCT 2 cut(s) 274, 715
AluI AGCT 2 cut(s) 274, 715
Alw26I GTCTC 1 cut(s) 589
AlwI GGATC 3 cut(s) 354, 583, 613
AlwNI CAGNNNCTG 1 cut(s) 432
Ama87I CYCGRG 2 cut(s) 179, 593
Aor13HI TCCGGA 1 cut(s) 522
AoxI GGCC 3 cut(s) 216, 480, 574
ApoI RAATTY 1 cut(s) 800
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AspLEI GCGC 2 cut(s) 210, 445
AspS9I GGNCC 2 cut(s) 217, 507
AsuC2I CCSGG 3 cut(s) 505, 623, 920
AsuHPI GGTGA 5 cut(s) 52, 301, 313, 712, 823
AvaI CYCGRG 2 cut(s) 179, 593
AvaII GGWCC 1 cut(s) 507
BbsI GAAGAC 2 cut(s) 14, 163
BccI CCATC 6 cut(s) 183, 550, 634, 682, 721, 739
BceAI ACGGC 5 cut(s) 236, 311, 377, 622, 711
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 2 cut(s) 224, 578
BcnI CCSGG 3 cut(s) 505, 623, 920
BcoDI GTCTC 1 cut(s) 589
BglII AGATCT 1 cut(s) 546
BisI GCNGC 3 cut(s) 390, 483, 486
BlsI GCNGC 3 cut(s) 391, 484, 487
Bme1390I CCNGG 5 cut(s) 224, 505, 578, 623, 920
Bme18I GGWCC 1 cut(s) 507
BmeT110I CYCGRG 2 cut(s) 179, 593
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 2 cut(s) 217, 507
BmiI GGNNCC 2 cut(s) 508, 509
BmrFI CCNGG 5 cut(s) 224, 505, 578, 623, 920
BmsI GCATC 3 cut(s) 276, 444, 506
BoxI GACNNNNGTC 1 cut(s) 776
BpiI GAAGAC 2 cut(s) 14, 163
BpmI CTGGAG 3 cut(s) 427, 563, 737
BpuMI CCSGG 3 cut(s) 505, 623, 920
Bsa29I ATCGAT 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 486, 855
BsaWI WCCGGW 1 cut(s) 522
BsaXI ACNNNNNCTCC 2 cut(s) 740, 770
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 410
BseAI TCCGGA 1 cut(s) 522
BseBI CCWGG 2 cut(s) 224, 578
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 486, 855
BseGI GGATG 2 cut(s) 519, 727
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 410
BseYI CCCAGC 1 cut(s) 609
Bsh1236I CGCG 5 cut(s) 208, 243, 443, 455, 488
BshFI GGCC 3 cut(s) 218, 482, 576
BshVI ATCGAT 1 cut(s) 45
BsiHKCI CYCGRG 2 cut(s) 179, 593
BsiSI CCGG 4 cut(s) 504, 523, 622, 920
BsiWI CGTACG 1 cut(s) 456
BslFI GGGAC 4 cut(s) 169, 223, 452, 493
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 1 cut(s) 589
BsmBI CGTCTC 1 cut(s) 589
BsmFI GGGAC 4 cut(s) 169, 223, 452, 493
BsnI GGCC 3 cut(s) 218, 482, 576
BsoBI CYCGRG 2 cut(s) 179, 593
Bsp13I TCCGGA 1 cut(s) 522
Bsp143I GATC 6 cut(s) 42, 57, 359, 546, 588, 618
BspANI GGCC 3 cut(s) 218, 482, 576
BspCNI CTCAG 1 cut(s) 57
BspDI ATCGAT 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 522
BspFNI CGCG 5 cut(s) 208, 243, 443, 455, 488
BspLI GGNNCC 2 cut(s) 508, 509
BspPI GGATC 3 cut(s) 354, 583, 613
BspQI GCTCTTC 1 cut(s) 266
BsrI ACTGG 1 cut(s) 410
BssECI CCNNGG 2 cut(s) 486, 855
BssMI GATC 6 cut(s) 42, 57, 359, 546, 588, 618
BssNI GRCGYC 1 cut(s) 249
Bst2UI CCWGG 2 cut(s) 224, 578
Bst4CI ACNGT 1 cut(s) 734
Bst6I CTCTTC 2 cut(s) 266, 305
BstACI GRCGYC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 2 cut(s) 519, 727
BstFNI CGCG 5 cut(s) 208, 243, 443, 455, 488
BstHHI GCGC 2 cut(s) 210, 445
BstKTI GATC 6 cut(s) 45, 60, 362, 549, 591, 621
BstMAI GTCTC 1 cut(s) 589
BstMBI GATC 6 cut(s) 42, 57, 359, 546, 588, 618
BstMWI GCNNNNNNNGC 4 cut(s) 197, 332, 494, 704
BstNI CCWGG 2 cut(s) 224, 578
BstPAI GACNNNNGTC 1 cut(s) 776
BstSCI CCNGG 5 cut(s) 222, 503, 576, 621, 918
BstUI CGCG 5 cut(s) 208, 243, 443, 455, 488
BstV2I GAAGAC 2 cut(s) 14, 163
BstX2I RGATCY 2 cut(s) 359, 546
BstYI RGATCY 2 cut(s) 359, 546
Bsu15I ATCGAT 1 cut(s) 45
BsuRI GGCC 3 cut(s) 218, 482, 576
BsuTUI ATCGAT 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 486
BtgZI GCGATG 1 cut(s) 436
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 2 cut(s) 519, 727
Cac8I GCNNGC 1 cut(s) 220
CaiI CAGNNNCTG 1 cut(s) 432
CfoI GCGC 2 cut(s) 210, 445
Cfr13I GGNCC 2 cut(s) 217, 507
Cfr42I CCGCGG 1 cut(s) 489
ClaI ATCGAT 1 cut(s) 45
CseI GACGC 2 cut(s) 257, 418
Csp6I GTAC 2 cut(s) 457, 604
CviAII CATG 1 cut(s) 887
CviQI GTAC 2 cut(s) 457, 604
DdeI CTNAG 1 cut(s) 65
DpnI GATC 6 cut(s) 44, 59, 361, 548, 590, 620
DpnII GATC 6 cut(s) 42, 57, 359, 546, 588, 618
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 2 cut(s) 266, 305
EarI CTCTTC 2 cut(s) 266, 305
Eco47I GGWCC 1 cut(s) 507
Eco88I CYCGRG 2 cut(s) 179, 593
EcoO109I RGGNCCY 1 cut(s) 507
EcoRII CCWGG 2 cut(s) 222, 576
Esp3I CGTCTC 1 cut(s) 589
FaeI CATG 1 cut(s) 890
FaiI YATR 4 cut(s) 566, 822, 846, 888
FaqI GGGAC 4 cut(s) 169, 223, 452, 493
FatI CATG 1 cut(s) 886
FauI CCCGC 5 cut(s) 227, 248, 479, 637, 653
FblI GTMKAC 1 cut(s) 758
Fnu4HI GCNGC 3 cut(s) 390, 483, 486
FokI GGATG 2 cut(s) 506, 734
Fsp4HI GCNGC 3 cut(s) 390, 483, 486
GlaI GCGC 2 cut(s) 209, 444
GluI GCNGC 3 cut(s) 390, 483, 486
GsaI CCCAGC 1 cut(s) 613
GsuI CTGGAG 3 cut(s) 427, 563, 737
HaeIII GGCC 3 cut(s) 218, 482, 576
HapII CCGG 4 cut(s) 504, 523, 622, 920
HgaI GACGC 2 cut(s) 257, 418
HhaI GCGC 2 cut(s) 210, 445
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 1 cut(s) 890
Hin6I GCGC 2 cut(s) 208, 443
HinP1I GCGC 2 cut(s) 208, 443
HincII GTYRAC 2 cut(s) 6, 759
HindII GTYRAC 2 cut(s) 6, 759
HinfI GANTC 5 cut(s) 10, 47, 182, 236, 777
HpaII CCGG 4 cut(s) 504, 523, 622, 920
HphI GGTGA 5 cut(s) 52, 301, 313, 712, 823
Hpy166II GTNNAC 2 cut(s) 6, 759
Hpy8I GTNNAC 2 cut(s) 6, 759
Hpy99I CGWCG 5 cut(s) 248, 251, 760, 763, 785
HpyAV CCTTC 2 cut(s) 226, 427
HpyCH4III ACNGT 1 cut(s) 734
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 435
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 332, 494, 704
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 168
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 1 cut(s) 890
HspAI GCGC 2 cut(s) 208, 443
KflI GGGWCCC 1 cut(s) 507
Kpn2I TCCGGA 1 cut(s) 522
KspI CCGCGG 1 cut(s) 489
Kzo9I GATC 6 cut(s) 42, 57, 359, 546, 588, 618
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 4 cut(s) 279, 408, 450, 748
LweI GCATC 3 cut(s) 276, 444, 506
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 4 cut(s) 319, 328, 691, 850
MalI GATC 6 cut(s) 44, 59, 361, 548, 590, 620
MboI GATC 6 cut(s) 42, 57, 359, 546, 588, 618
MboII GAAGA 6 cut(s) 14, 17, 163, 253, 292, 369
MflI RGATCY 2 cut(s) 359, 546
MluCI AATT 2 cut(s) 800, 891
MlyI GAGTC 4 cut(s) 4, 191, 245, 786
MmeI TCCRAC 2 cut(s) 38, 426
MroI TCCGGA 1 cut(s) 522
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 4 cut(s) 504, 523, 622, 920
MspR9I CCNGG 5 cut(s) 224, 505, 578, 623, 920
MvaI CCWGG 2 cut(s) 224, 578
MvnI CGCG 5 cut(s) 208, 243, 443, 455, 488
MwoI GCNNNNNNNGC 4 cut(s) 197, 332, 494, 704
NciI CCSGG 3 cut(s) 505, 623, 920
NdeII GATC 6 cut(s) 42, 57, 359, 546, 588, 618
NlaIII CATG 1 cut(s) 890
NlaIV GGNNCC 2 cut(s) 508, 509
NmuCI GTSAC 1 cut(s) 319
PaeR7I CTCGAG 2 cut(s) 179, 593
PciSI GCTCTTC 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PfeI GAWTC 1 cut(s) 47
Pfl23II CGTACG 1 cut(s) 456
PflFI GACNNNGTC 1 cut(s) 920
PkrI GCNGC 3 cut(s) 391, 484, 487
PleI GAGTC 4 cut(s) 4, 190, 244, 785
PpsI GAGTC 4 cut(s) 4, 190, 244, 785
PpuMI RGGWCCY 1 cut(s) 507
PshAI GACNNNNGTC 1 cut(s) 776
Psp5II RGGWCCY 1 cut(s) 507
Psp6I CCWGG 2 cut(s) 222, 576
PspFI CCCAGC 1 cut(s) 609
PspGI CCWGG 2 cut(s) 222, 576
PspLI CGTACG 1 cut(s) 456
PspN4I GGNNCC 2 cut(s) 508, 509
PspPI GGNCC 2 cut(s) 217, 507
PspPPI RGGWCCY 1 cut(s) 507
PspXI VCTCGAGB 1 cut(s) 593
PstNI CAGNNNCTG 1 cut(s) 432
PsuI RGATCY 2 cut(s) 359, 546
PsyI GACNNNGTC 1 cut(s) 920
RsaI GTAC 2 cut(s) 458, 605
RsaNI GTAC 2 cut(s) 457, 604
SacII CCGCGG 1 cut(s) 489
SalI GTCGAC 1 cut(s) 757
SapI GCTCTTC 1 cut(s) 266
SatI GCNGC 3 cut(s) 390, 483, 486
Sau3AI GATC 6 cut(s) 42, 57, 359, 546, 588, 618
Sau96I GGNCC 2 cut(s) 217, 507
SchI GAGTC 4 cut(s) 4, 191, 245, 786
ScrFI CCNGG 5 cut(s) 224, 505, 578, 623, 920
SetI ASST 8 cut(s) 171, 228, 276, 314, 341, 605, 717, 857
SfaNI GCATC 3 cut(s) 276, 444, 506
Sfr274I CTCGAG 2 cut(s) 179, 593
Sfr303I CCGCGG 1 cut(s) 489
SgrBI CCGCGG 1 cut(s) 489
SgrDI CGTCGACG 1 cut(s) 757
SinI GGWCC 1 cut(s) 507
SlaI CTCGAG 2 cut(s) 179, 593
SmlI CTYRAG 2 cut(s) 179, 593
SmoI CTYRAG 2 cut(s) 179, 593
Sse9I AATT 2 cut(s) 800, 891
StyD4I CCNGG 5 cut(s) 222, 503, 576, 621, 918
TaaI ACNGT 1 cut(s) 734
TaiI ACGT 1 cut(s) 171
TaqI TCGA 6 cut(s) 45, 180, 213, 587, 594, 758
TasI AATT 2 cut(s) 800, 891
TauI GCSGC 3 cut(s) 392, 485, 488
TfiI GAWTC 1 cut(s) 47
TseFI GTSAC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 508, 918
TspGWI ACGGA 4 cut(s) 40, 307, 365, 369
Tth111I GACNNNGTC 1 cut(s) 920
VpaK11BI GGWCC 1 cut(s) 507
XapI RAATTY 1 cut(s) 800
XhoI CTCGAG 2 cut(s) 179, 593
XmiI GTMKAC 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.