AT4G17085

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
9604335 .. 9604974
640 bp
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UTR
Exon/CDS
Intron
AT4G17085.1

Sequence Viewer

Length: 174 bp
ATGCAAAAATCGTTCTCGTTGATCCAAACAGTGGCAATCTCCGGCGTATTCTCCGCCGTCTCATGCTGGTATGGATTCATGTTCGGTAGAGAATCAGCGAGAAAAGAGCTCGGAGGTTTGATCGAAGAGCTCCGTCGTGGAGGCTCCAATTCTGATTCCACTCCCCATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.21

Weight (kDa)

7.96

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017125)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 31
AciI CCGC 1 cut(s) 54
AclWI GGATC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 31
AluBI AGCT 2 cut(s) 109, 130
AluI AGCT 2 cut(s) 109, 130
Alw21I GWGCWC 2 cut(s) 111, 132
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 1 cut(s) 16
BanII GRGCYC 2 cut(s) 111, 132
Bbv12I GWGCWC 2 cut(s) 111, 132
BceAI ACGGC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 31
BsiHKAI GWGCWC 2 cut(s) 111, 132
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 64
BsmBI CGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 111, 132
Bsp143I GATC 2 cut(s) 21, 120
BspACI CCGC 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 145
BspPI GGATC 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 120
BssMI GATC 2 cut(s) 21, 120
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 120
BstKTI GATC 2 cut(s) 24, 123
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 2 cut(s) 21, 120
BtsIMutI CAGTG 1 cut(s) 36
CviAII CATG 2 cut(s) 63, 79
CviJI RGCY 3 cut(s) 109, 130, 144
CviKI_1 RGCY 3 cut(s) 109, 130, 144
DpnI GATC 2 cut(s) 23, 122
DpnII GATC 2 cut(s) 21, 120
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
EciI GGCGGA 1 cut(s) 43
Ecl136II GAGCTC 2 cut(s) 109, 130
Eco24I GRGCYC 2 cut(s) 111, 132
Eco53kI GAGCTC 2 cut(s) 109, 130
EcoICRI GAGCTC 2 cut(s) 109, 130
EcoT38I GRGCYC 2 cut(s) 111, 132
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 2 cut(s) 66, 82
FaiI YATR 3 cut(s) 64, 72, 80
FatI CATG 2 cut(s) 62, 78
FriOI GRGCYC 2 cut(s) 111, 132
HapII CCGG 1 cut(s) 42
Hin1II CATG 2 cut(s) 66, 82
HinfI GANTC 3 cut(s) 75, 92, 155
HpaII CCGG 1 cut(s) 42
Hpy188I TCNGA 2 cut(s) 113, 154
Hpy188III TCNNGA 1 cut(s) 171
Hpy99I CGWCG 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 2 cut(s) 66, 82
Kzo9I GATC 2 cut(s) 21, 120
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 135, 149
LpnPI CCDG 2 cut(s) 52, 55
MalI GATC 2 cut(s) 23, 122
MboI GATC 2 cut(s) 21, 120
MboII GAAGA 1 cut(s) 137
MhlI GDGCHC 2 cut(s) 111, 132
MluCI AATT 1 cut(s) 148
MnlI CCTC 2 cut(s) 107, 134
MspI CCGG 1 cut(s) 42
NdeII GATC 2 cut(s) 21, 120
NlaIII CATG 2 cut(s) 66, 82
NlaIV GGNNCC 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 120
PfeI GAWTC 3 cut(s) 75, 92, 155
PflMI CCANNNNNTGG 1 cut(s) 31
Psp124BI GAGCTC 2 cut(s) 111, 132
PspN4I GGNNCC 1 cut(s) 145
SacI GAGCTC 2 cut(s) 111, 132
SapI GCTCTTC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 21, 120
SduI GDGCHC 2 cut(s) 111, 132
SetI ASST 3 cut(s) 111, 118, 132
SgeI CNNG 8 cut(s) 28, 54, 75, 79, 91, 111, 122, 149
Sse9I AATT 1 cut(s) 148
SsiI CCGC 1 cut(s) 54
SstI GAGCTC 2 cut(s) 111, 132
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 123
TasI AATT 1 cut(s) 148
TfiI GAWTC 3 cut(s) 75, 92, 155
TscAI CASTG 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 67
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 36
Van91I CCANNNNNTGG 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.