Rw5G034740

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
59919766 .. 59920037
272 bp
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UTR
Exon/CDS
Intron
Rw5G034740.1

Sequence Viewer

Length: 174 bp
ATGGAGAAAGCTTTCACTCTGGTTCACACAATTGCAGTGGCAACTGTCTTCTCTGCCGTTTCCGGCTGGTACGGCTTCATGTTTGGAAGAGAATCTGCTCGCAAAGAGCTCGGAAGCTTAATCGAAGACCTTCGCCGCCAGAATCCCAATTCCGATCCACCACCTCATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.35

Weight (kDa)

6.71

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017125)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 136
AclWI GGATC 1 cut(s) 149
AfaI GTAC 1 cut(s) 71
AluBI AGCT 3 cut(s) 11, 109, 117
AluI AGCT 3 cut(s) 11, 109, 117
Alw21I GWGCWC 1 cut(s) 111
AlwI GGATC 1 cut(s) 149
Asp700I GAANNNNTTC 2 cut(s) 11, 129
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 2 cut(s) 40, 132
Bbv12I GWGCWC 1 cut(s) 111
BceAI ACGGC 2 cut(s) 41, 88
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
BpiI GAAGAC 2 cut(s) 40, 132
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 1 cut(s) 136
BspPI GGATC 1 cut(s) 149
BssMI GATC 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 100
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstV2I GAAGAC 2 cut(s) 40, 132
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 70
CspCI CAANNNNNGTGG 2 cut(s) 18, 53
CviAII CATG 1 cut(s) 79
CviJI RGCY 5 cut(s) 11, 66, 75, 109, 117
CviKI_1 RGCY 5 cut(s) 11, 66, 75, 109, 117
CviQI GTAC 1 cut(s) 70
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 1 cut(s) 82
FaiI YATR 1 cut(s) 80
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 136
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 136
GluI GCNGC 1 cut(s) 136
HapII CCGG 1 cut(s) 63
Hin1II CATG 1 cut(s) 82
HindIII AAGCTT 2 cut(s) 9, 115
HinfI GANTC 2 cut(s) 92, 142
HpaII CCGG 1 cut(s) 63
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 113, 154
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 4 cut(s) 5, 52, 76, 152
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 3 cut(s) 40, 99, 137
MfeI CAATTG 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 2 cut(s) 30, 148
MnlI CCTC 1 cut(s) 174
MroXI GAANNNNTTC 2 cut(s) 11, 129
MseI TTAA 1 cut(s) 119
MspI CCGG 1 cut(s) 63
MunI CAATTG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 72
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 82
PdmI GAANNNNTTC 2 cut(s) 11, 129
PfeI GAWTC 2 cut(s) 92, 142
PkrI GCNGC 1 cut(s) 137
Psp124BI GAGCTC 1 cut(s) 111
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 1 cut(s) 154
SduI GDGCHC 1 cut(s) 111
SetI ASST 5 cut(s) 13, 111, 119, 132, 166
SgeI CNNG 7 cut(s) 32, 75, 79, 91, 111, 122, 151
Sse9I AATT 2 cut(s) 30, 148
SsiI CCGC 1 cut(s) 136
SstI GAGCTC 1 cut(s) 111
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 123
TasI AATT 2 cut(s) 30, 148
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 2 cut(s) 92, 142
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 67
TspRI CASTG 1 cut(s) 42
XmnI GAANNNNTTC 2 cut(s) 11, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.