MD04G1056100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0017125
Physical Location & Seq
Forward (+)
6852650 .. 6854219
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1056100.v1.1.491

Sequence Viewer

Length: 189 bp
ATGGAGAAAACCTTCACACTCCTTCATACAATTGTCACTGCAACTGTCTTCTCTGCTGTTTCCGGATGGTACGGATTCATGTTCGGAAGAGAATCTGCTCGCAAAGAACTCGGAAGTTTGATCGAAGACCTTCGCCGCCAGAATCCCAACTCCGATCCGCCACATTCACCTCCGCCTCCACATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.92

Weight (kDa)

6.82

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17085
malus_domestica MD04G1056100.v1.1
prunus_persica Prupe.5G051100_v2.0.a1 Prupe.5G051100_v2.0.a1 Prupe.5G051100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0259711 RchiOBHm_Chr7g0205921
rosa_roxburghii Rroxscaffold_3G00251150 Rroxscaffold_7G00206980
rosa_rugosa Rorug07G0097000
rosa_samantha Rh6DG089400
rosa_wichuraiana Rw5G034740 Rw6G009220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 62
AciI CCGC 3 cut(s) 136, 158, 173
AclWI GGATC 1 cut(s) 149
AfaI GTAC 1 cut(s) 71
AlwI GGATC 1 cut(s) 149
Aor13HI TCCGGA 1 cut(s) 62
Asp700I GAANNNNTTC 2 cut(s) 11, 129
AsuHPI GGTGA 1 cut(s) 159
BbsI GAAGAC 2 cut(s) 40, 132
BccI CCATC 1 cut(s) 60
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
BpiI GAAGAC 2 cut(s) 40, 132
BsaWI WCCGGW 1 cut(s) 62
BseAI TCCGGA 1 cut(s) 62
BseGI GGATG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 63
Bsp13I TCCGGA 1 cut(s) 62
Bsp143I GATC 2 cut(s) 120, 154
BspACI CCGC 3 cut(s) 136, 158, 173
BspEI TCCGGA 1 cut(s) 62
BspPI GGATC 1 cut(s) 149
BssMI GATC 2 cut(s) 120, 154
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 100
BstF5I GGATG 1 cut(s) 71
BstKTI GATC 2 cut(s) 123, 157
BstMBI GATC 2 cut(s) 120, 154
BstNSI RCATGY 1 cut(s) 185
BstV2I GAAGAC 2 cut(s) 40, 132
BtsCI GGATG 1 cut(s) 71
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 70
CviAII CATG 2 cut(s) 79, 182
CviQI GTAC 1 cut(s) 70
DpnI GATC 2 cut(s) 122, 156
DpnII GATC 2 cut(s) 120, 154
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
EciI GGCGGA 2 cut(s) 147, 162
FaeI CATG 2 cut(s) 82, 185
FaiI YATR 3 cut(s) 27, 80, 183
FatI CATG 2 cut(s) 78, 181
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 136
GluI GCNGC 1 cut(s) 136
HapII CCGG 1 cut(s) 63
Hin1II CATG 2 cut(s) 82, 185
HinfI GANTC 3 cut(s) 75, 92, 142
HpaII CCGG 1 cut(s) 63
HphI GGTGA 1 cut(s) 159
Hpy188I TCNGA 3 cut(s) 86, 113, 154
Hpy188III TCNNGA 1 cut(s) 63
HpyAV CCTTC 3 cut(s) 22, 32, 140
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 41
Hsp92II CATG 2 cut(s) 82, 185
Kpn2I TCCGGA 1 cut(s) 62
Kzo9I GATC 2 cut(s) 120, 154
LpnPI CCDG 2 cut(s) 76, 152
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 122, 156
MboI GATC 2 cut(s) 120, 154
MboII GAAGA 3 cut(s) 40, 99, 137
MfeI CAATTG 1 cut(s) 30
MluCI AATT 1 cut(s) 30
MnlI CCTC 2 cut(s) 180, 186
MroI TCCGGA 1 cut(s) 62
MroXI GAANNNNTTC 2 cut(s) 11, 129
MspI CCGG 1 cut(s) 63
MunI CAATTG 1 cut(s) 30
NdeII GATC 2 cut(s) 120, 154
NlaIII CATG 2 cut(s) 82, 185
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 185
PdmI GAANNNNTTC 2 cut(s) 11, 129
PfeI GAWTC 3 cut(s) 75, 92, 142
PkrI GCNGC 1 cut(s) 137
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 2 cut(s) 120, 154
SetI ASST 3 cut(s) 14, 132, 172
SgeI CNNG 5 cut(s) 75, 91, 111, 122, 151
Sse9I AATT 1 cut(s) 30
SsiI CCGC 3 cut(s) 136, 158, 173
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 123
TasI AATT 1 cut(s) 30
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 3 cut(s) 75, 92, 142
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 14, 67
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 1 cut(s) 43
XceI RCATGY 1 cut(s) 185
XmnI GAANNNNTTC 2 cut(s) 11, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.