Rroxscaffold_3G00251150

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
45094828 .. 45095029
202 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00251150.1

Sequence Viewer

Length: 156 bp
ATGGAGAAGGCTGTCACTCTAGTTCAGACAGTTGCAGTGGCAACAGTCTTCTCTGCCGTTTCCGGCTGGTACTGCTTCATGTTTGGAAGAGAATCTGCTCGCAAAGAGCTCGGAAGCTTAATCCAAGACCTTCGCCGCCAGAATCCCAATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

51

Amino Acids

5.69

Weight (kDa)

9.18

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017125)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 136
AfaI GTAC 1 cut(s) 71
AluBI AGCT 2 cut(s) 109, 117
AluI AGCT 2 cut(s) 109, 117
Alw21I GWGCWC 1 cut(s) 111
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 111
BceAI ACGGC 1 cut(s) 41
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BfaI CTAG 1 cut(s) 20
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 111
BspACI CCGC 1 cut(s) 136
Bst4CI ACNGT 2 cut(s) 31, 46
Bst6I CTCTTC 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 70
CviAII CATG 1 cut(s) 79
CviJI RGCY 4 cut(s) 11, 66, 109, 117
CviKI_1 RGCY 4 cut(s) 11, 66, 109, 117
CviQI GTAC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 1 cut(s) 82
FaiI YATR 1 cut(s) 80
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 136
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 1 cut(s) 20
GluI GCNGC 1 cut(s) 136
HapII CCGG 1 cut(s) 63
Hin1II CATG 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 115
HinfI GANTC 2 cut(s) 92, 142
HpaII CCGG 1 cut(s) 63
Hpy188I TCNGA 2 cut(s) 27, 113
Hpy188III TCNNGA 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 2 cut(s) 31, 46
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
Hsp92II CATG 1 cut(s) 82
LpnPI CCDG 3 cut(s) 52, 76, 152
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 13
MboII GAAGA 2 cut(s) 40, 99
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 1 cut(s) 148
MseI TTAA 1 cut(s) 119
MspI CCGG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 72
NlaIII CATG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 13
PfeI GAWTC 2 cut(s) 92, 142
PkrI GCNGC 1 cut(s) 137
Psp124BI GAGCTC 1 cut(s) 111
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 1 cut(s) 136
SduI GDGCHC 1 cut(s) 111
SetI ASST 3 cut(s) 111, 119, 132
SgeI CNNG 8 cut(s) 32, 75, 79, 91, 111, 122, 137, 151
Sse9I AATT 1 cut(s) 148
SsiI CCGC 1 cut(s) 136
SspMI CTAG 1 cut(s) 20
SstI GAGCTC 1 cut(s) 111
TaaI ACNGT 2 cut(s) 31, 46
TasI AATT 1 cut(s) 148
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 2 cut(s) 92, 142
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 67
TspRI CASTG 1 cut(s) 42
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.