AT4G17480

Palmitoyl-protein thioesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007771
Physical Location & Seq
Reverse (-)
9744913 .. 9747104
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17480.2

Sequence Viewer

Length: 915 bp
ATGGAGAAGAGTTTCCAGAAATCAGCTCTCCTTGTGACCTTGACTCTCTTCTTCTTCATTCCAGTTTCAATCTCGGTTCCATTCATTCTGTTTCATGGGATTAGAGATCAATGCTCCAATGGTGGAGTGAGCAGCTTCGTACAGCTCCTTAGCAACCTCTCTAGCTCCCATGGATCTTGCTTAGAAATAGGAAATGGAGAGCAAGATTCGGTGACTATGCCGCTTACGCAACAAGCGAGTGTAGCGTGTGAGAAAGTTAAACAGATGAAGGATTTGAGTCAAGGCTACAACATTGTTGCACAGTCTCAAGGAAACTTGGTAGCTAGAGGTCTAATCGAGTTTTGTGACAATGCTCCTCCGGTCTTCAACTATATATCTTTAGGAGGTCCTCATGCTGGCATATCCGACATTCCCAAGTGTAATTCTACACTTTGCGAGTTGCTGAAAACAGCGGTCTACACCGACTTCGTACAAGATCATATTGCTCCAAGTGGTTATATCAAGATTCCTACAGATATAAAAGATTACCTGGAACACTCCAAGTATCTGCCAAAGATCAACAACGAGAGACCTAACGAAAGGAACACCACTTTTAAAGACCGGTTCACTAGCTTGCACAACTTGGTCCTTGTCATGTTTGAGGGTGATGCAGTAGTGATTCCTAAAGAAAGTTCTTGGTTCGGATATTACCCGGATGGAGCTTCCACACCTCTTTTGTCTCCTCAACAGACAAAGCTCTATACTGAGGATTGGATTGGTCTGAAAACATTGGATGCTGCCAGAAAAGTTAAGTTTGTCAGTGTCCCTGGCGAGCACCTAAGAATAGCGCAAGACGACGTTGTAAAACACGTCGTGCCTTACCTCAAGAACCAGCCTGCGTCTATGAGTGAAGATTTGGAGATACTGCATCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142
Pfam Domains
Protein Families
Palm_thioest

Protein Analysis

304

Amino Acids

33.71

Weight (kDa)

5.84

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Palm_thioest PF02089 8 - 217 2.7e-73 Palmitoyl protein thioesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 456
AciI CCGC 2 cut(s) 221, 452
AclWI GGATC 1 cut(s) 181
AdeI CACNNNGTG 1 cut(s) 853
AfaI GTAC 2 cut(s) 141, 471
AfiI CCNNNNNNNGG 1 cut(s) 395
AflIII ACRYGT 1 cut(s) 847
AgeI ACCGGT 1 cut(s) 600
AgsI TTSAA 2 cut(s) 69, 367
AjiI CACGTC 1 cut(s) 850
AjnI CCWGG 2 cut(s) 528, 805
AluBI AGCT 8 cut(s) 26, 135, 145, 165, 323, 612, 701, 736
AluI AGCT 8 cut(s) 26, 135, 145, 165, 323, 612, 701, 736
Alw21I GWGCWC 1 cut(s) 816
Alw26I GTCTC 3 cut(s) 309, 562, 723
AlwI GGATC 1 cut(s) 181
ApeKI GCWGC 2 cut(s) 132, 776
AsiGI ACCGGT 1 cut(s) 600
Asp700I GAANNNNTTC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 829
AspS9I GGNCC 2 cut(s) 386, 625
AsuC2I CCSGG 1 cut(s) 692
AsuHPI GGTGA 2 cut(s) 223, 656
AvaII GGWCC 2 cut(s) 386, 625
BbsI GAAGAC 1 cut(s) 355
Bbv12I GWGCWC 1 cut(s) 816
BbvI GCAGC 2 cut(s) 144, 763
BccI CCATC 1 cut(s) 689
BciT130I CCWGG 2 cut(s) 530, 807
BcnI CCSGG 1 cut(s) 692
BcoDI GTCTC 3 cut(s) 309, 562, 723
BfaI CTAG 3 cut(s) 162, 324, 609
BfmI CTRYAG 1 cut(s) 510
BisI GCNGC 3 cut(s) 133, 221, 777
BlsI GCNGC 3 cut(s) 134, 222, 778
Bme1390I CCNGG 3 cut(s) 530, 692, 807
Bme18I GGWCC 2 cut(s) 386, 625
BmgBI CACGTC 1 cut(s) 850
BmgT120I GGNCC 2 cut(s) 386, 625
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 3 cut(s) 530, 692, 807
BmsI GCATC 2 cut(s) 637, 763
BpiI GAAGAC 1 cut(s) 355
Bpu10I CCTNAGC 1 cut(s) 149
BpuEI CTTGAG 2 cut(s) 291, 848
BpuMI CCSGG 1 cut(s) 692
BsaI GGTCTC 1 cut(s) 562
BsaJI CCNNGG 2 cut(s) 169, 805
BsaWI WCCGGW 2 cut(s) 358, 600
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse118I RCCGGY 1 cut(s) 600
Bse1I ACTGG 1 cut(s) 62
BseBI CCWGG 2 cut(s) 530, 807
BseDI CCNNGG 2 cut(s) 169, 805
BseGI GGATG 2 cut(s) 700, 778
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMII CTCAG 1 cut(s) 735
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 2 cut(s) 345, 711
BseXI GCAGC 2 cut(s) 144, 763
BshTI ACCGGT 1 cut(s) 600
BsiHKAI GWGCWC 1 cut(s) 816
BsiSI CCGG 3 cut(s) 359, 601, 692
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 1 cut(s) 395
BsmAI GTCTC 3 cut(s) 309, 562, 723
BsmFI GGGAC 1 cut(s) 788
Bso31I GGTCTC 1 cut(s) 562
Bsp1286I GDGCHC 1 cut(s) 816
Bsp143I GATC 4 cut(s) 106, 173, 475, 555
Bsp19I CCATGG 1 cut(s) 169
BspACI CCGC 2 cut(s) 221, 452
BspCNI CTCAG 1 cut(s) 736
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 1 cut(s) 181
BspTNI GGTCTC 1 cut(s) 562
BsrFI RCCGGY 1 cut(s) 600
BsrI ACTGG 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 600
BssECI CCNNGG 2 cut(s) 169, 805
BssMI GATC 4 cut(s) 106, 173, 475, 555
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 2 cut(s) 530, 807
Bst4CI ACNGT 1 cut(s) 303
Bst6I CTCTTC 2 cut(s) 2, 53
BstC8I GCNNGC 4 cut(s) 397, 614, 812, 876
BstDEI CTNAG 4 cut(s) 149, 181, 744, 818
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 2 cut(s) 700, 778
BstHHI GCGC 1 cut(s) 829
BstKTI GATC 4 cut(s) 109, 176, 478, 558
BstMAI GTCTC 3 cut(s) 309, 562, 723
BstMBI GATC 4 cut(s) 106, 173, 475, 555
BstMWI GCNNNNNNNGC 2 cut(s) 226, 242
BstNI CCWGG 2 cut(s) 530, 807
BstSCI CCNGG 3 cut(s) 528, 690, 805
BstSFI CTRYAG 1 cut(s) 510
BstV1I GCAGC 2 cut(s) 144, 763
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 169
BtrI CACGTC 1 cut(s) 850
BtsCI GGATG 2 cut(s) 700, 778
BtsIMutI CAGTG 1 cut(s) 805
Cac8I GCNNGC 4 cut(s) 397, 614, 812, 876
CfoI GCGC 1 cut(s) 829
Cfr10I RCCGGY 1 cut(s) 600
Cfr13I GGNCC 2 cut(s) 386, 625
CseI GACGC 1 cut(s) 867
Csp6I GTAC 2 cut(s) 140, 470
CspAI ACCGGT 1 cut(s) 600
CviAII CATG 4 cut(s) 95, 170, 392, 634
CviQI GTAC 2 cut(s) 140, 470
DdeI CTNAG 4 cut(s) 149, 181, 744, 818
DpnI GATC 4 cut(s) 108, 175, 477, 557
DpnII GATC 4 cut(s) 106, 173, 475, 555
DraI TTTAAA 1 cut(s) 595
DraIII CACNNNGTG 1 cut(s) 853
Eam1104I CTCTTC 2 cut(s) 2, 53
EarI CTCTTC 2 cut(s) 2, 53
Eco130I CCWWGG 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 562
Eco47I GGWCC 2 cut(s) 386, 625
EcoO109I RGGNCCY 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 528, 805
EcoT14I CCWWGG 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 4 cut(s) 98, 173, 395, 637
FaqI GGGAC 1 cut(s) 788
FatI CATG 4 cut(s) 94, 169, 391, 633
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 3 cut(s) 133, 221, 777
FokI GGATG 2 cut(s) 707, 785
Fsp4HI GCNGC 3 cut(s) 133, 221, 777
FspBI CTAG 3 cut(s) 162, 324, 609
GlaI GCGC 1 cut(s) 828
GluI GCNGC 3 cut(s) 133, 221, 777
HapII CCGG 3 cut(s) 359, 601, 692
HgaI GACGC 1 cut(s) 867
HhaI GCGC 1 cut(s) 829
Hin1II CATG 4 cut(s) 98, 173, 395, 637
Hin6I GCGC 1 cut(s) 827
HinP1I GCGC 1 cut(s) 827
HinfI GANTC 5 cut(s) 43, 206, 277, 505, 658
HpaII CCGG 3 cut(s) 359, 601, 692
HphI GGTGA 2 cut(s) 223, 656
Hpy166II GTNNAC 2 cut(s) 457, 606
Hpy188I TCNGA 3 cut(s) 406, 683, 762
Hpy188III TCNNGA 3 cut(s) 16, 502, 865
Hpy8I GTNNAC 2 cut(s) 457, 606
Hpy99I CGWCG 2 cut(s) 839, 854
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4IV ACGT 2 cut(s) 837, 849
HpyCH4V TGCA 4 cut(s) 299, 616, 650, 907
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 242
HpyF3I CTNAG 4 cut(s) 149, 181, 744, 818
HpySE526I ACGT 2 cut(s) 837, 849
Hsp92II CATG 4 cut(s) 98, 173, 395, 637
HspAI GCGC 1 cut(s) 827
Kzo9I GATC 4 cut(s) 106, 173, 475, 555
LmnI GCTCC 6 cut(s) 119, 150, 170, 358, 490, 698
Lsp1109I GCAGC 2 cut(s) 144, 763
LweI GCATC 2 cut(s) 637, 763
MaeI CTAG 3 cut(s) 162, 324, 609
MaeII ACGT 2 cut(s) 837, 849
MaeIII GTNAC 3 cut(s) 34, 211, 344
MalI GATC 4 cut(s) 108, 175, 477, 557
MboI GATC 4 cut(s) 106, 173, 475, 555
MboII GAAGA 6 cut(s) 19, 40, 43, 46, 355, 902
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 1 cut(s) 816
MluCI AATT 1 cut(s) 421
MlyI GAGTC 2 cut(s) 37, 286
MmeI TCCRAC 1 cut(s) 429
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 3 cut(s) 258, 594, 789
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 3 cut(s) 359, 601, 692
MspR9I CCNGG 3 cut(s) 530, 692, 807
MvaI CCWGG 2 cut(s) 530, 807
MwoI GCNNNNNNNGC 2 cut(s) 226, 242
NciI CCSGG 1 cut(s) 692
NcoI CCATGG 1 cut(s) 169
NdeII GATC 4 cut(s) 106, 173, 475, 555
NlaIII CATG 4 cut(s) 98, 173, 395, 637
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 3 cut(s) 34, 211, 344
PcsI WCGNNNNNNNCGW 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 3 cut(s) 206, 505, 658
PinAI ACCGGT 1 cut(s) 600
PkrI GCNGC 3 cut(s) 134, 222, 778
PleI GAGTC 2 cut(s) 37, 285
PpsI GAGTC 2 cut(s) 37, 285
PpuMI RGGWCCY 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 386
Psp6I CCWGG 2 cut(s) 528, 805
PspGI CCWGG 2 cut(s) 528, 805
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 2 cut(s) 386, 625
PspPPI RGGWCCY 1 cut(s) 386
PsuI RGATCY 1 cut(s) 173
RsaI GTAC 2 cut(s) 141, 471
RsaNI GTAC 2 cut(s) 140, 470
SaqAI TTAA 3 cut(s) 258, 594, 789
SatI GCNGC 3 cut(s) 133, 221, 777
Sau3AI GATC 4 cut(s) 106, 173, 475, 555
Sau96I GGNCC 2 cut(s) 386, 625
SchI GAGTC 2 cut(s) 37, 286
ScrFI CCNGG 3 cut(s) 530, 692, 807
SduI GDGCHC 1 cut(s) 816
SfaNI GCATC 2 cut(s) 637, 763
SfcI CTRYAG 1 cut(s) 510
SinI GGWCC 2 cut(s) 386, 625
SmlI CTYRAG 2 cut(s) 306, 863
SmoI CTYRAG 2 cut(s) 306, 863
Sse9I AATT 1 cut(s) 421
SsiI CCGC 2 cut(s) 221, 452
SspMI CTAG 3 cut(s) 162, 324, 609
StyD4I CCNGG 3 cut(s) 528, 690, 805
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 303
TaiI ACGT 2 cut(s) 840, 852
TaqI TCGA 1 cut(s) 336
TasI AATT 1 cut(s) 421
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 3 cut(s) 206, 505, 658
Tru1I TTAA 3 cut(s) 258, 594, 789
Tru9I TTAA 3 cut(s) 258, 594, 789
TscAI CASTG 1 cut(s) 805
TseFI GTSAC 3 cut(s) 34, 211, 344
TseI GCWGC 2 cut(s) 132, 776
Tsp45I GTSAC 3 cut(s) 34, 211, 344
TspDTI ATGAA 4 cut(s) 46, 73, 83, 281
TspRI CASTG 1 cut(s) 805
VpaK11BI GGWCC 2 cut(s) 386, 625
XmiI GTMKAC 1 cut(s) 456
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 3 cut(s) 162, 324, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.