Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007771

Physical Location & Seq

Genomic Coordinates Forward (+)

47205093 .. 47210587

Gene Structure 5495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAGTTTAATTCGTTCTCCTCCGTTGGCTTCGTCTTCATCTTGGCTTTTGTGCTCATCCCATGTTCAGTTTCAGTACCCTTCATTGTACTCCATGGCATTGGAGATCAGTGCGCCAATAGAGGAGTTAAACAGTTTACGGAGCAACTGAGGGACTTTTCGGGTGCTGAAGGATATTGCATAGAAGTTGGGGCTGGAACATGGGATTCCTGGTTTGTGCCTCTCGAGGAACAGACCAGAATTGTCTGTGAAAAGGTTAAAGAAATGGAAGAACTCAGACAAGGTTACAACATTGTTGGGCTCTCCCAGGGTAATTTGATAGGCCGAGGTGTTGTAGAATTTTGCGACAATGGACCTCCGGTTAAAAACCTTATTTCTTTAGGAGGACCTCATGCGGGTATTGCTTCTGTACCTCTCTGTGGTTCTGGCATATTTTGCATTATTGCAAACAAGCTAATCAAAGGGAAGATCTACAGTGACTATATCCAAGAACACTTGGCTCCCAGTGGTTATATTAAATTGCCAAATTTTGAGCAAGACAATGTTTTGGTACCCAGAGAAACCTCGTGGTTTGGATATTACCCAGATGGTGCCTTCAATTCAATCCTAGGTCCAGAGCAGACTGATCTGTACATTGAAGACTGGATTGGTTTGAGAACACTGGATGAAGCTGGAAGGATCAAATACATTAGTGTTTCAGGAGGTCATCTTGGAATCTCCAAAAGTGATATGAAGAAGCATGTGGTGCCTTACTTGACAAGTTCAGCATCGCCAACAAATGGAAACAATGAGGTGAATGGACTTCAACGTAAGGTTGTGGGATGCAAAAAGGAGCCCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

280

Amino Acids

30.64

Weight (kDa)

5.45

Isoelectric Point (pI)

29.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Palm_thioest	PF02089	27 - 176	6.1e-36	Palmitoyl protein thioesterase
Palm_thioest	PF02089	176 - 236	5.4e-16	Palmitoyl protein thioesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17480 AT4G17480 AT4G17480 AT4G17480
fragaria_vesca	FvH4_5g19650 FvH4_5g19650 FvH4_5g19650 FvH4_5g19650
malus_domestica	MD04G1061600.v1.1
prunus_persica	Prupe.5G063800_v2.0.a1 Prupe.5G063800_v2.0.a1
pyrus_communis	pycom04g05530 pycom06g04640
rosa_chinensis	RchiOBHm_Chr7g0204381
rosa_laevigata	RLG00000003468
rosa_multiflora	Rmu_sc0002918.1_g000006
rosa_roxburghii	Rroxscaffold_3G00253180
rosa_rugosa	Rorug07G0082700 Rorug07G0082800
rosa_samantha	Rh7AG213000 Rh7BG211100 Rh7CG226100 Rh7DG220300
rosa_wichuraiana	Rw7G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	550
AccB1I	GGYRCC	3 cut(s)	550, 590, 745
AccB7I	CCANNNNNTGG	1 cut(s)	779
AciI	CCGC	1 cut(s)	395
AclWI	GGATC	1 cut(s)	686
AcsI	RAATTY	2 cut(s)	338, 526
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	5 cut(s)	78, 90, 411, 552, 632
AfiI	CCNNNNNNNGG	3 cut(s)	395, 419, 779
AgsI	TTSAA	4 cut(s)	598, 603, 638, 806
AjnI	CCWGG	2 cut(s)	209, 306
AjuI	GAANNNNNNNTTGG	2 cut(s)	630, 662
AluBI	AGCT	2 cut(s)	454, 671
AluI	AGCT	2 cut(s)	454, 671
Alw21I	GWGCWC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	686
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	322
ApoI	RAATTY	2 cut(s)	338, 526
Asp718I	GGTACC	1 cut(s)	550
AspA2I	CCTAGG	1 cut(s)	607
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	3 cut(s)	353, 386, 611
AsuHPI	GGTGA	1 cut(s)	805
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	3 cut(s)	353, 386, 611
AvrII	CCTAGG	1 cut(s)	607
BanI	GGYRCC	3 cut(s)	550, 590, 745
BanII	GRGCYC	2 cut(s)	303, 837
BauI	CACGAG	1 cut(s)	565
BbsI	GAAGAC	2 cut(s)	28, 645
Bbv12I	GWGCWC	1 cut(s)	57
BccI	CCATC	1 cut(s)	581
BciT130I	CCWGG	2 cut(s)	211, 308
BfaI	CTAG	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	472
BglII	AGATCT	1 cut(s)	468
BlnI	CCTAGG	1 cut(s)	607
Bme1390I	CCNGG	2 cut(s)	211, 308
Bme18I	GGWCC	3 cut(s)	353, 386, 611
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	3 cut(s)	353, 386, 611
BmiI	GGNNCC	5 cut(s)	501, 552, 592, 747, 834
BmrFI	CCNGG	2 cut(s)	211, 308
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	2 cut(s)	776, 812
BmuI	ACTGGG	1 cut(s)	498
BpiI	GAAGAC	2 cut(s)	28, 645
BsaJI	CCNNGG	5 cut(s)	94, 306, 307, 325, 607
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	3 cut(s)	395, 419, 779
Bse1I	ACTGG	3 cut(s)	504, 647, 666
BseBI	CCWGG	2 cut(s)	211, 308
BseDI	CCNNGG	5 cut(s)	94, 306, 307, 325, 607
BseGI	GGATG	3 cut(s)	57, 670, 827
BseLI	CCNNNNNNNGG	3 cut(s)	395, 419, 779
BseMII	CTCAG	2 cut(s)	140, 289
BseNI	ACTGG	3 cut(s)	504, 647, 666
BseRI	GAGGAG	2 cut(s)	10, 138
BshFI	GGCC	1 cut(s)	324
BshNI	GGYRCC	3 cut(s)	550, 590, 745
BsiHKAI	GWGCWC	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	3 cut(s)	395, 419, 779
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	324
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	3 cut(s)	57, 303, 837
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	4 cut(s)	106, 468, 625, 678
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	2 cut(s)	141, 288
BspLI	GGNNCC	5 cut(s)	501, 552, 592, 747, 834
BspPI	GGATC	1 cut(s)	686
BspT107I	GGYRCC	3 cut(s)	550, 590, 745
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	3 cut(s)	504, 647, 666
BssECI	CCNNGG	5 cut(s)	94, 306, 307, 325, 607
BssMI	GATC	4 cut(s)	106, 468, 625, 678
BssSI	CACGAG	1 cut(s)	565
BssT1I	CCWWGG	2 cut(s)	94, 607
Bst2BI	CACGAG	1 cut(s)	565
Bst2UI	CCWGG	2 cut(s)	211, 308
Bst4CI	ACNGT	2 cut(s)	135, 476
BstAPI	GCANNNNNTGC	2 cut(s)	435, 745
BstAUI	TGTACA	1 cut(s)	630
BstDEI	CTNAG	2 cut(s)	149, 275
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	3 cut(s)	57, 670, 827
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	4 cut(s)	109, 471, 628, 681
BstMBI	GATC	4 cut(s)	106, 468, 625, 678
BstMWI	GCNNNNNNNGC	3 cut(s)	401, 435, 745
BstNI	CCWGG	2 cut(s)	211, 308
BstNSI	RCATGY	1 cut(s)	743
BstSCI	CCNGG	2 cut(s)	209, 306
BstSFI	CTRYAG	1 cut(s)	472
BstV2I	GAAGAC	2 cut(s)	28, 645
BstX2I	RGATCY	1 cut(s)	468
BstXI	CCANNNNNNTGG	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	94
BtgZI	GCGATG	1 cut(s)	753
BtsCI	GGATG	3 cut(s)	57, 670, 827
BtsIMutI	CAGTG	4 cut(s)	116, 481, 511, 659
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	3 cut(s)	353, 386, 611
Csp6I	GTAC	5 cut(s)	77, 89, 410, 551, 631
CviAII	CATG	5 cut(s)	63, 95, 201, 392, 740
CviJI	RGCY	9 cut(s)	30, 47, 194, 301, 324, 454, 500, 671, 835
CviKI_1	RGCY	9 cut(s)	30, 47, 194, 301, 324, 454, 500, 671, 835
CviQI	GTAC	5 cut(s)	77, 89, 410, 551, 631
DdeI	CTNAG	2 cut(s)	149, 275
DpnI	GATC	4 cut(s)	108, 470, 627, 680
DpnII	GATC	4 cut(s)	106, 468, 625, 678
Eco130I	CCWWGG	2 cut(s)	94, 607
Eco24I	GRGCYC	2 cut(s)	303, 837
Eco47I	GGWCC	3 cut(s)	353, 386, 611
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	386
EcoRII	CCWGG	2 cut(s)	209, 306
EcoT14I	CCWWGG	2 cut(s)	94, 607
EcoT38I	GRGCYC	2 cut(s)	303, 837
ErhI	CCWWGG	2 cut(s)	94, 607
FaeI	CATG	5 cut(s)	66, 98, 204, 395, 743
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	5 cut(s)	62, 94, 200, 391, 739
FauI	CCCGC	1 cut(s)	388
FokI	GGATG	3 cut(s)	44, 677, 834
FriOI	GRGCYC	2 cut(s)	303, 837
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	1 cut(s)	359
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	5 cut(s)	66, 98, 204, 395, 743
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	2 cut(s)	206, 714
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	1 cut(s)	805
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	1 cut(s)	278
Hpy188III	TCNNGA	3 cut(s)	224, 614, 699
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	4 cut(s)	91, 164, 604, 669
HpyCH4III	ACNGT	2 cut(s)	135, 476
HpyCH4IV	ACGT	1 cut(s)	808
HpyCH4V	TGCA	4 cut(s)	180, 438, 446, 825
HpyF10VI	GCNNNNNNNGC	3 cut(s)	401, 435, 745
HpyF3I	CTNAG	2 cut(s)	149, 275
HpySE526I	ACGT	1 cut(s)	808
Hsp92II	CATG	5 cut(s)	66, 98, 204, 395, 743
HspAI	GCGC	1 cut(s)	114
KpnI	GGTACC	1 cut(s)	554
Kzo9I	GATC	4 cut(s)	106, 468, 625, 678
LmnI	GCTCC	3 cut(s)	142, 505, 832
LweI	GCATC	2 cut(s)	776, 812
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	1 cut(s)	808
MaeIII	GTNAC	2 cut(s)	284, 476
MalI	GATC	4 cut(s)	108, 470, 627, 680
MboI	GATC	4 cut(s)	106, 468, 625, 678
MboII	GAAGA	5 cut(s)	28, 281, 478, 650, 745
MflI	RGATCY	1 cut(s)	468
MhlI	GDGCHC	3 cut(s)	57, 303, 837
MluCI	AATT	7 cut(s)	10, 240, 313, 338, 518, 526, 598
MseI	TTAA	5 cut(s)	9, 129, 258, 363, 516
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	2 cut(s)	211, 308
MvaI	CCWGG	2 cut(s)	211, 308
MwoI	GCNNNNNNNGC	3 cut(s)	401, 435, 745
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	4 cut(s)	106, 468, 625, 678
NlaIII	CATG	5 cut(s)	66, 98, 204, 395, 743
NlaIV	GGNNCC	5 cut(s)	501, 552, 592, 747, 834
NmeAIII	GCCGAG	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	476
NspI	RCATGY	1 cut(s)	743
PaeR7I	CTCGAG	1 cut(s)	224
PasI	CCCWGGG	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	206, 714
PflMI	CCANNNNNTGG	1 cut(s)	779
PpuMI	RGGWCCY	1 cut(s)	386
Psp5II	RGGWCCY	1 cut(s)	386
Psp6I	CCWGG	2 cut(s)	209, 306
PspGI	CCWGG	2 cut(s)	209, 306
PspN4I	GGNNCC	5 cut(s)	501, 552, 592, 747, 834
PspPI	GGNCC	3 cut(s)	353, 386, 611
PspPPI	RGGWCCY	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	468
RsaI	GTAC	5 cut(s)	78, 90, 411, 552, 632
RsaNI	GTAC	5 cut(s)	77, 89, 410, 551, 631
SaqAI	TTAA	5 cut(s)	9, 129, 258, 363, 516
Sau3AI	GATC	4 cut(s)	106, 468, 625, 678
Sau96I	GGNCC	3 cut(s)	353, 386, 611
ScrFI	CCNGG	2 cut(s)	211, 308
SduI	GDGCHC	3 cut(s)	57, 303, 837
SfaNI	GCATC	2 cut(s)	776, 812
SfcI	CTRYAG	1 cut(s)	472
Sfr274I	CTCGAG	1 cut(s)	224
SinI	GGWCC	3 cut(s)	353, 386, 611
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	7 cut(s)	10, 240, 313, 338, 518, 526, 598
SsiI	CCGC	1 cut(s)	395
SspMI	CTAG	1 cut(s)	608
StyD4I	CCNGG	2 cut(s)	209, 306
StyI	CCWWGG	2 cut(s)	94, 607
TaaI	ACNGT	2 cut(s)	135, 476
TaiI	ACGT	1 cut(s)	811
TaqI	TCGA	1 cut(s)	225
TasI	AATT	7 cut(s)	10, 240, 313, 338, 518, 526, 598
TatI	WGTACW	2 cut(s)	88, 630
TfiI	GAWTC	2 cut(s)	206, 714
Tru1I	TTAA	5 cut(s)	9, 129, 258, 363, 516
Tru9I	TTAA	5 cut(s)	9, 129, 258, 363, 516
TscAI	CASTG	4 cut(s)	116, 481, 511, 666
TseFI	GTSAC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	4 cut(s)	28, 73, 681, 746
TspGWI	ACGGA	2 cut(s)	13, 155
TspRI	CASTG	4 cut(s)	116, 481, 511, 666
Van91I	CCANNNNNTGG	1 cut(s)	779
VpaK11BI	GGWCC	3 cut(s)	353, 386, 611
XapI	RAATTY	2 cut(s)	338, 526
XceI	RCATGY	1 cut(s)	743
XhoI	CTCGAG	1 cut(s)	224
XmaJI	CCTAGG	1 cut(s)	607
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.