Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007771

Physical Location & Seq

Genomic Coordinates Forward (+)

6518353 .. 6520013

Gene Structure 1661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0082800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCAGCAGCAGAGGAAACCAGTAAGTCATCTGAAGCTTTTCCAATGAAAGGTGGAGATGGACCCAACAGCTATGTCAAAAACTCCATATATCAGAGAGGAGCTGTGGATGTAGCTAAGCAACTTTTAGACAAGGAAATTGCAGAGAAGCTTGACACAGAAATCTCGTTACTTTCGAACACCTTTAACATTGCAGATTTGGGTTGCTCAGTTGGGCCTAATACATTTTCTTCAGTTGAAAACATACTCGAAGCTGTGCAGCTCAAGTATCAATGTCACGGGCTGGATTCCCAAATCCCTGAATTTCAAGTTTTCTTTAATGATCACATCCTAAATGATTTTAACATGCTGTTCAAATCCCTCCCTCCAAACCGGCAATACTATGCCGCGGGCGTGCCAGGTTCTTTCTATGGTCGTATATTTCCTAATAATTCCATTCACTTGGTTCACTCTTCTTCTTCCAACCATTGGCTTTCCAGGGTGCCGAAAGAGGTAGTTGACAAAAACTGTCCTGCTTGGAATAAAGGAGAAATTCATTACTCAAATTCCACAAATGAAGTAGTGAAGGCTTATGAAGCTCAATATGCCGAGGATATGGAGTGTTTCTTGAATGCCAGGTCACGAGAGATCGTGTCTGGAGGACTGATGGTACTAATCATTCCAGGCCGCCCCAATGGCACCCCTCATTCCAAAACTCTGCCAAATATGATGTTACAACTTTTGGGAACTTCCCTCATGGAAATGGCTAGAAAGGGAGTTGTTCTGGAACAGAAAGTAGACTCGTTTAACATACCTATGTATTACATGTCTCCCCAAGAGTTGGAAGCTGCTGTAGAAGGAAATGGATGTTTTAGCATAGAGAAGATTGAAAACTTACCCAGTGCCTTGGCAGATGGCGCGTTCATTGAAACTCGAGTATTAGCATACCATATGAGAGCTGCTGCAGAAGCACTAATTAAGCAGCAATTTGGAGAAGAAATCTTGGATGAGCTGTTTGACTTGTACTGTAAGAAACTTGAAGAGAAGCCCTCCATCTTTGAGTCTGGGAAGGGAATTAACTTTCTTGCTGTTCTTAAACGCATGCCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

363

Amino Acids

40.41

Weight (kDa)

5.24

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	54 - 360	5.4e-107	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17480 AT4G17480 AT4G17480 AT4G17480
fragaria_vesca	FvH4_5g19650 FvH4_5g19650 FvH4_5g19650 FvH4_5g19650
malus_domestica	MD04G1061600.v1.1
prunus_persica	Prupe.5G063800_v2.0.a1 Prupe.5G063800_v2.0.a1
pyrus_communis	pycom04g05530 pycom06g04640
rosa_chinensis	RchiOBHm_Chr7g0204381
rosa_laevigata	RLG00000003468
rosa_multiflora	Rmu_sc0002918.1_g000006
rosa_roxburghii	Rroxscaffold_3G00253180
rosa_rugosa	Rorug07G0082700 Rorug07G0082800
rosa_samantha	Rh7AG213000 Rh7BG211100 Rh7CG226100 Rh7DG220300
rosa_wichuraiana	Rw7G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	481, 677
AccB7I	CCANNNNNTGG	2 cut(s)	468, 820
AccI	GTMKAC	1 cut(s)	777
AccII	CGCG	2 cut(s)	389, 899
AciI	CCGC	3 cut(s)	387, 389, 667
AcsI	RAATTY	3 cut(s)	302, 531, 544
AcuI	CTGAAG	2 cut(s)	54, 216
AfaI	GTAC	2 cut(s)	651, 1004
AfiI	CCNNNNNNNGG	3 cut(s)	50, 468, 820
AflIII	ACRYGT	1 cut(s)	804
AgsI	TTSAA	7 cut(s)	239, 308, 355, 610, 869, 908, 1019
AjnI	CCWGG	4 cut(s)	397, 476, 614, 661
Alw26I	GTCTC	1 cut(s)	813
Ama87I	CYCGRG	1 cut(s)	912
AoxI	GGCC	2 cut(s)	215, 664
ApeKI	GCWGC	7 cut(s)	5, 8, 259, 827, 938, 941, 961
ApoI	RAATTY	3 cut(s)	302, 531, 544
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	899
AspS9I	GGNCC	2 cut(s)	62, 215
AsuII	TTCGAA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	912
AvaII	GGWCC	1 cut(s)	62
BanI	GGYRCC	2 cut(s)	481, 677
BauI	CACGAG	1 cut(s)	621
BbvI	GCAGC	7 cut(s)	17, 20, 271, 814, 925, 928, 973
BccI	CCATC	4 cut(s)	53, 640, 887, 1040
BciT130I	CCWGG	4 cut(s)	399, 478, 616, 663
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	813
BfaI	CTAG	1 cut(s)	747
BfmI	CTRYAG	2 cut(s)	831, 942
BglI	GCCNNNNNGGC	1 cut(s)	675
BisI	GCNGC	9 cut(s)	6, 9, 260, 387, 667, 828, 939, 942, 962
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	9 cut(s)	7, 10, 261, 388, 668, 829, 940, 943, 963
Bme1390I	CCNGG	4 cut(s)	399, 478, 616, 663
Bme18I	GGWCC	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	912
BmgT120I	GGNCC	2 cut(s)	62, 215
BmiI	GGNNCC	3 cut(s)	64, 483, 679
BmrFI	CCNGG	4 cut(s)	399, 478, 616, 663
BmrI	ACTGGG	1 cut(s)	873
BmuI	ACTGGG	1 cut(s)	873
BplI	GAGNNNNNCTC	2 cut(s)	1013, 1045
BpmI	CTGGAG	1 cut(s)	657
Bpu1102I	GCTNAGC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	248
BsaJI	CCNNGG	4 cut(s)	387, 477, 588, 885
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 468, 820
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	2 cut(s)	21, 879
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	4 cut(s)	399, 478, 616, 663
BseDI	CCNNGG	4 cut(s)	387, 477, 588, 885
BseGI	GGATG	4 cut(s)	115, 327, 851, 991
BseLI	CCNNNNNNNGG	3 cut(s)	50, 468, 820
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	21, 879
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	7 cut(s)	17, 20, 271, 814, 925, 928, 973
BsgI	GTGCAG	1 cut(s)	278
Bsh1236I	CGCG	2 cut(s)	389, 899
BshFI	GGCC	2 cut(s)	217, 666
BshNI	GGYRCC	2 cut(s)	481, 677
BsiHKCI	CYCGRG	1 cut(s)	912
BsiSI	CCGG	1 cut(s)	373
BslI	CCNNNNNNNGG	3 cut(s)	50, 468, 820
BsmAI	GTCTC	1 cut(s)	813
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	2 cut(s)	217, 666
BsoBI	CYCGRG	1 cut(s)	912
Bsp119I	TTCGAA	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	322, 627
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	3 cut(s)	387, 389, 667
BspANI	GGCC	2 cut(s)	217, 666
BspCNI	CTCAG	1 cut(s)	221
BspFNI	CGCG	2 cut(s)	389, 899
BspLI	GGNNCC	3 cut(s)	64, 483, 679
BspMAI	CTGCAG	1 cut(s)	946
BspT104I	TTCGAA	1 cut(s)	176
BspT107I	GGYRCC	2 cut(s)	481, 677
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	21, 879
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	4 cut(s)	387, 477, 588, 885
BssMI	GATC	2 cut(s)	322, 627
BssSI	CACGAG	1 cut(s)	621
BssT1I	CCWWGG	1 cut(s)	885
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	4 cut(s)	399, 478, 616, 663
Bst4CI	ACNGT	2 cut(s)	509, 1007
Bst6I	CTCTTC	2 cut(s)	457, 1014
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	3 cut(s)	391, 395, 1082
BstDEI	CTNAG	2 cut(s)	117, 208
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	4 cut(s)	115, 327, 851, 991
BstFNI	CGCG	2 cut(s)	389, 899
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	2 cut(s)	325, 630
BstMAI	GTCTC	1 cut(s)	813
BstMBI	GATC	2 cut(s)	322, 627
BstMWI	GCNNNNNNNGC	5 cut(s)	575, 584, 675, 896, 947
BstNI	CCWGG	4 cut(s)	399, 478, 616, 663
BstNSI	RCATGY	3 cut(s)	349, 808, 1084
BstSCI	CCNGG	4 cut(s)	397, 476, 614, 661
BstSFI	CTRYAG	2 cut(s)	831, 942
BstUI	CGCG	2 cut(s)	389, 899
BstV1I	GCAGC	7 cut(s)	17, 20, 271, 814, 925, 928, 973
BstXI	CCANNNNNNTGG	2 cut(s)	442, 886
BsuRI	GGCC	2 cut(s)	217, 666
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	4 cut(s)	115, 327, 851, 991
BtsIMutI	CAGTG	1 cut(s)	886
Cac8I	GCNNGC	3 cut(s)	391, 395, 1082
CfoI	GCGC	1 cut(s)	899
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	2 cut(s)	62, 215
Cfr42I	CCGCGG	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	650, 1003
CviAII	CATG	4 cut(s)	346, 736, 805, 1081
CviQI	GTAC	2 cut(s)	650, 1003
DdeI	CTNAG	2 cut(s)	117, 208
DpnI	GATC	2 cut(s)	324, 629
DpnII	GATC	2 cut(s)	322, 627
Eam1104I	CTCTTC	2 cut(s)	457, 1014
EarI	CTCTTC	2 cut(s)	457, 1014
Eco130I	CCWWGG	1 cut(s)	885
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	2 cut(s)	54, 216
Eco88I	CYCGRG	1 cut(s)	912
EcoRII	CCWGG	4 cut(s)	397, 476, 614, 661
EcoT14I	CCWWGG	1 cut(s)	885
ErhI	CCWWGG	1 cut(s)	885
FaeI	CATG	4 cut(s)	349, 739, 808, 1084
FatI	CATG	4 cut(s)	345, 735, 804, 1080
FauI	CCCGC	1 cut(s)	382
FauNDI	CATATG	1 cut(s)	930
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	9 cut(s)	6, 9, 260, 387, 667, 828, 939, 942, 962
FokI	GGATG	4 cut(s)	122, 314, 858, 998
Fsp4HI	GCNGC	9 cut(s)	6, 9, 260, 387, 667, 828, 939, 942, 962
FspBI	CTAG	1 cut(s)	747
GlaI	GCGC	1 cut(s)	898
GluI	GCNGC	9 cut(s)	6, 9, 260, 387, 667, 828, 939, 942, 962
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	2 cut(s)	217, 666
HapII	CCGG	1 cut(s)	373
HhaI	GCGC	1 cut(s)	899
Hin1II	CATG	4 cut(s)	349, 739, 808, 1084
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HindIII	AAGCTT	2 cut(s)	36, 149
HinfI	GANTC	3 cut(s)	287, 779, 1040
HpaII	CCGG	1 cut(s)	373
Hpy166II	GTNNAC	3 cut(s)	448, 499, 778
Hpy188I	TCNGA	2 cut(s)	34, 96
Hpy188III	TCNNGA	4 cut(s)	607, 621, 636, 764
Hpy8I	GTNNAC	3 cut(s)	448, 499, 778
HpyAV	CCTTC	3 cut(s)	559, 830, 1042
HpyCH4III	ACNGT	2 cut(s)	509, 1007
HpyCH4V	TGCA	4 cut(s)	143, 194, 259, 944
HpyF10VI	GCNNNNNNNGC	5 cut(s)	575, 584, 675, 896, 947
HpyF3I	CTNAG	2 cut(s)	117, 208
Hsp92II	CATG	4 cut(s)	349, 739, 808, 1084
HspAI	GCGC	1 cut(s)	897
Ksp22I	TGATCA	1 cut(s)	322
KspI	CCGCGG	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	322, 627
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	7 cut(s)	17, 20, 271, 814, 925, 928, 973
MaeI	CTAG	1 cut(s)	747
MaeIII	GTNAC	4 cut(s)	168, 275, 618, 711
MalI	GATC	2 cut(s)	324, 629
MboI	GATC	2 cut(s)	322, 627
MboII	GAAGA	7 cut(s)	222, 444, 447, 450, 874, 986, 1031
MluCI	AATT	9 cut(s)	138, 302, 430, 531, 544, 954, 965, 1053, 1087
MlyI	GAGTC	2 cut(s)	773, 1049
MmeI	TCCRAC	2 cut(s)	486, 801
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	7 cut(s)	186, 318, 342, 786, 957, 1056, 1074
MslI	CAYNNNNRTG	2 cut(s)	740, 794
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	1 cut(s)	373
MspR9I	CCNGG	4 cut(s)	399, 478, 616, 663
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	4 cut(s)	399, 478, 616, 663
MvnI	CGCG	2 cut(s)	389, 899
MwoI	GCNNNNNNNGC	5 cut(s)	575, 584, 675, 896, 947
NdeI	CATATG	1 cut(s)	930
NdeII	GATC	2 cut(s)	322, 627
NlaIII	CATG	4 cut(s)	349, 739, 808, 1084
NlaIV	GGNNCC	3 cut(s)	64, 483, 679
NmeAIII	GCCGAG	1 cut(s)	613
NmuCI	GTSAC	2 cut(s)	275, 618
NspI	RCATGY	3 cut(s)	349, 808, 1084
NspV	TTCGAA	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	1084
PaeR7I	CTCGAG	1 cut(s)	912
PciI	ACATGT	1 cut(s)	804
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PctI	GAATGC	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	287
PflMI	CCANNNNNTGG	2 cut(s)	468, 820
PkrI	GCNGC	9 cut(s)	7, 10, 261, 388, 668, 829, 940, 943, 963
PleI	GAGTC	2 cut(s)	773, 1048
PpsI	GAGTC	2 cut(s)	773, 1048
PscI	ACATGT	1 cut(s)	804
Psp6I	CCWGG	4 cut(s)	397, 476, 614, 661
PspGI	CCWGG	4 cut(s)	397, 476, 614, 661
PspN4I	GGNNCC	3 cut(s)	64, 483, 679
PspPI	GGNCC	2 cut(s)	62, 215
PspXI	VCTCGAGB	1 cut(s)	912
PstI	CTGCAG	1 cut(s)	946
RsaI	GTAC	2 cut(s)	651, 1004
RsaNI	GTAC	2 cut(s)	650, 1003
RseI	CAYNNNNRTG	2 cut(s)	740, 794
SacII	CCGCGG	1 cut(s)	390
SaqAI	TTAA	7 cut(s)	186, 318, 342, 786, 957, 1056, 1074
SatI	GCNGC	9 cut(s)	6, 9, 260, 387, 667, 828, 939, 942, 962
Sau3AI	GATC	2 cut(s)	322, 627
Sau96I	GGNCC	2 cut(s)	62, 215
SchI	GAGTC	2 cut(s)	773, 1049
ScrFI	CCNGG	4 cut(s)	399, 478, 616, 663
SfcI	CTRYAG	2 cut(s)	831, 942
Sfr274I	CTCGAG	1 cut(s)	912
Sfr303I	CCGCGG	1 cut(s)	390
SfuI	TTCGAA	1 cut(s)	176
SgrBI	CCGCGG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	62
SlaI	CTCGAG	1 cut(s)	912
SmiMI	CAYNNNNRTG	2 cut(s)	740, 794
SmlI	CTYRAG	2 cut(s)	263, 912
SmoI	CTYRAG	2 cut(s)	263, 912
SphI	GCATGC	1 cut(s)	1084
Sse9I	AATT	9 cut(s)	138, 302, 430, 531, 544, 954, 965, 1053, 1087
SsiI	CCGC	3 cut(s)	387, 389, 667
SspMI	CTAG	1 cut(s)	747
StyD4I	CCNGG	4 cut(s)	397, 476, 614, 661
StyI	CCWWGG	1 cut(s)	885
TaaI	ACNGT	2 cut(s)	509, 1007
TaqI	TCGA	3 cut(s)	176, 249, 913
TasI	AATT	9 cut(s)	138, 302, 430, 531, 544, 954, 965, 1053, 1087
TatI	WGTACW	1 cut(s)	1002
TauI	GCSGC	2 cut(s)	389, 669
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	7 cut(s)	186, 318, 342, 786, 957, 1056, 1074
Tru9I	TTAA	7 cut(s)	186, 318, 342, 786, 957, 1056, 1074
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	2 cut(s)	275, 618
TseI	GCWGC	7 cut(s)	5, 8, 259, 827, 938, 941, 961
Tsp45I	GTSAC	2 cut(s)	275, 618
TspDTI	ATGAA	5 cut(s)	62, 524, 570, 588, 892
TspRI	CASTG	1 cut(s)	886
Van91I	CCANNNNNTGG	2 cut(s)	468, 820
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	3 cut(s)	302, 531, 544
XceI	RCATGY	3 cut(s)	349, 808, 1084
XhoI	CTCGAG	1 cut(s)	912
XmiI	GTMKAC	1 cut(s)	777
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.