Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0007771

Physical Location & Seq

Genomic Coordinates Reverse (-)

8136590 .. 8141994

Gene Structure 5405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1061600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGATGGAGTTGGTCGTCGTCTTCATCGTGGCTTTGATATCCATCCCAACTTCACTTTCCGTACCCTTCATAGTCCTCCATGGCATTGGAGACCAGTGCTCTAACAAAGGAGTTAAACAGTTTACCGAGAAACTGAGCAACTTTTCTGGTGTTGAAGGATATTGCATAGAAATTGGTGATGGAACGTGGGATTCCTGGTTTTTGCCTCTTGAGGAACAGACCAGAATCGTTTGTGATAAGGTTAAAGAAAAGGAAGAACTGAGACAAGGTTATAACATTGTTGGTCTCTCCCAGGGCAATTTGATAGGCCGAGGTGTGGTAGAATTTTGTGTCGATGGACCCCCTGTCAAGAACTTTGTCTCTTTAGGAGGACCTCATGCGGGTACTGCTTCTGTGCCTCTTTGTGGTTCTGGTATATTCTGCATCATTGTGAATAAGCTACTCAAATCAGAGATCTACACAGACTATATTCAAGAACACCTGGCTCCCAGCGGTTATCTTAAATTACCAAATGCAATGTCTGAATATTTAGGAAAATGCAAGTTTCTTCCGAAGCTTAACAACGAACTCCCTGATGAGAGAAACTCCACTTACAAGGAAAGGTTTAGTAGCTTACAGAACCTGGTGCTTATCATGTTTGAGCATGACACTGTTTTGATACCGAAAGAGACCTCGTGGTTTGGATATTACCAAGATGACAGCTTCAAATCGATTTTAAGTCCACAGCAGACCGATCTGTATACTGAGGACTGGATCGGTTTGAGAACCTTGGACGAAGCTGGGAGGGTCAAGTACATTAGCGTTGCAGGAGGTCATCTCGGAATCTCCACCAGCGACATGAAGAAGCACGTAGTGCCCTACTTGCAAGATTCAGCATCAAGGACGATTGGAAACAAGGAAGCCAGTCACACCAGGAGGGCAAGTGGGGAGTTTGATGAGAGAGCAACAACTGAAGTTGTACTGGAAGGATCGTCATCGTACAGGTGGCCCTTACCGGTCAAGAATTTCTTCAGTGAACTTCTTGGCCTCACAGAGGACAAGTCACTGCATCATCAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

354

Amino Acids

39.39

Weight (kDa)

5.45

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Palm_thioest	PF02089	22 - 272	8.3e-78	Palmitoyl protein thioesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17480 AT4G17480 AT4G17480 AT4G17480
fragaria_vesca	FvH4_5g19650 FvH4_5g19650 FvH4_5g19650 FvH4_5g19650
malus_domestica	MD04G1061600.v1.1
prunus_persica	Prupe.5G063800_v2.0.a1 Prupe.5G063800_v2.0.a1
pyrus_communis	pycom04g05530 pycom06g04640
rosa_chinensis	RchiOBHm_Chr7g0204381
rosa_laevigata	RLG00000003468
rosa_multiflora	Rmu_sc0002918.1_g000006
rosa_roxburghii	Rroxscaffold_3G00253180
rosa_rugosa	Rorug07G0082700 Rorug07G0082800
rosa_samantha	Rh7AG213000 Rh7BG211100 Rh7CG226100 Rh7DG220300
rosa_wichuraiana	Rw7G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	740
AciI	CCGC	2 cut(s)	380, 492
AclWI	GGATC	2 cut(s)	761, 976
AcsI	RAATTY	2 cut(s)	323, 1003
AcuI	CTGAAG	2 cut(s)	972, 994
AdeI	CACNNNGTG	1 cut(s)	853
AfaI	GTAC	5 cut(s)	63, 385, 794, 960, 980
AfiI	CCNNNNNNNGG	4 cut(s)	316, 380, 404, 1033
AgeI	ACCGGT	1 cut(s)	994
AgsI	TTSAA	3 cut(s)	155, 473, 706
AhdI	GACNNNNNGTC	1 cut(s)	344
AjnI	CCWGG	5 cut(s)	194, 291, 480, 621, 911
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AluBI	AGCT	5 cut(s)	439, 556, 612, 702, 779
AluI	AGCT	5 cut(s)	439, 556, 612, 702, 779
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	5 cut(s)	84, 256, 290, 364, 662
AlwI	GGATC	2 cut(s)	761, 976
AlwNI	CAGNNNCTG	1 cut(s)	622
AoxI	GGCC	3 cut(s)	307, 986, 1024
ApoI	RAATTY	2 cut(s)	323, 1003
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
AsiGI	ACCGGT	1 cut(s)	994
Asp700I	GAANNNNTTC	1 cut(s)	1007
AspS9I	GGNCC	3 cut(s)	338, 371, 987
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	338, 371
BaeGI	GKGCMC	1 cut(s)	858
BauI	CACGAG	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	101
BccI	CCATC	3 cut(s)	50, 173, 329
BciT130I	CCWGG	5 cut(s)	196, 293, 482, 623, 913
BcoDI	GTCTC	5 cut(s)	84, 256, 290, 364, 662
BglII	AGATCT	1 cut(s)	453
Bme1390I	CCNGG	5 cut(s)	196, 293, 482, 623, 913
Bme18I	GGWCC	2 cut(s)	338, 371
BmeRI	GACNNNNNGTC	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	338, 371, 987
BmiI	GGNNCC	2 cut(s)	340, 486
BmrFI	CCNGG	5 cut(s)	196, 293, 482, 623, 913
BmsI	GCATC	3 cut(s)	432, 884, 1057
BpiI	GAAGAC	1 cut(s)	13
BplI	GAGNNNNNCTC	4 cut(s)	569, 601, 801, 833
BpuEI	CTTGAG	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	710
BsaAI	YACGTR	1 cut(s)	850
BsaBI	GATNNNNATC	2 cut(s)	41, 973
BsaI	GGTCTC	3 cut(s)	84, 290, 662
BsaJI	CCNNGG	5 cut(s)	79, 291, 292, 310, 768
BsaWI	WCCGGW	1 cut(s)	994
BsaXI	ACNNNNNCTCC	2 cut(s)	907, 937
Bsc4I	CCNNNNNNNGG	4 cut(s)	316, 380, 404, 1033
Bse118I	RCCGGY	1 cut(s)	994
Bse1I	ACTGG	4 cut(s)	94, 755, 903, 966
Bse3DI	GCAATG	1 cut(s)	522
Bse8I	GATNNNNATC	2 cut(s)	41, 973
BseBI	CCWGG	5 cut(s)	196, 293, 482, 623, 913
BseCI	ATCGAT	1 cut(s)	710
BseDI	CCNNGG	5 cut(s)	79, 291, 292, 310, 768
BseGI	GGATG	1 cut(s)	42
BseJI	GATNNNNATC	2 cut(s)	41, 973
BseLI	CCNNNNNNNGG	4 cut(s)	316, 380, 404, 1033
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	3 cut(s)	125, 251, 735
BseNI	ACTGG	4 cut(s)	94, 755, 903, 966
BseSI	GKGCMC	1 cut(s)	858
BseYI	CCCAGC	2 cut(s)	488, 779
BshFI	GGCC	3 cut(s)	309, 988, 1026
BshTI	ACCGGT	1 cut(s)	994
BshVI	ATCGAT	1 cut(s)	710
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	995
BslI	CCNNNNNNNGG	4 cut(s)	316, 380, 404, 1033
BsmAI	GTCTC	5 cut(s)	84, 256, 290, 364, 662
BsnI	GGCC	3 cut(s)	309, 988, 1026
Bso31I	GGTCTC	3 cut(s)	84, 290, 662
Bsp1286I	GDGCHC	2 cut(s)	101, 858
Bsp143I	GATC	4 cut(s)	453, 733, 753, 968
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	2 cut(s)	380, 492
BspANI	GGCC	3 cut(s)	309, 988, 1026
BspCNI	CTCAG	3 cut(s)	126, 252, 736
BspDI	ATCGAT	1 cut(s)	710
BspLI	GGNNCC	2 cut(s)	340, 486
BspPI	GGATC	2 cut(s)	761, 976
BspTNI	GGTCTC	3 cut(s)	84, 290, 662
BsrDI	GCAATG	1 cut(s)	522
BsrFI	RCCGGY	1 cut(s)	994
BsrI	ACTGG	4 cut(s)	94, 755, 903, 966
BssAI	RCCGGY	1 cut(s)	994
BssECI	CCNNGG	5 cut(s)	79, 291, 292, 310, 768
BssMI	GATC	4 cut(s)	453, 733, 753, 968
BssNAI	GTATAC	1 cut(s)	741
BssSI	CACGAG	1 cut(s)	673
BssT1I	CCWWGG	2 cut(s)	79, 768
Bst1107I	GTATAC	1 cut(s)	741
Bst2BI	CACGAG	1 cut(s)	673
Bst2UI	CCWGG	5 cut(s)	196, 293, 482, 623, 913
Bst4CI	ACNGT	2 cut(s)	120, 652
BstAPI	GCANNNNNTGC	1 cut(s)	853
BstBAI	YACGTR	1 cut(s)	850
BstDEI	CTNAG	3 cut(s)	134, 260, 744
BstDSI	CCRYGG	1 cut(s)	79
BstENI	CCTNNNNNAGG	1 cut(s)	1031
BstF5I	GGATG	1 cut(s)	42
BstKTI	GATC	4 cut(s)	456, 736, 756, 971
BstMAI	GTCTC	5 cut(s)	84, 256, 290, 364, 662
BstMBI	GATC	4 cut(s)	453, 733, 753, 968
BstMWI	GCNNNNNNNGC	4 cut(s)	386, 853, 862, 1054
BstNI	CCWGG	5 cut(s)	196, 293, 482, 623, 913
BstSCI	CCNGG	5 cut(s)	194, 291, 480, 621, 911
BstSLI	GKGCMC	1 cut(s)	858
BstV2I	GAAGAC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	453
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	453
BstZ17I	GTATAC	1 cut(s)	741
Bsu15I	ATCGAT	1 cut(s)	710
BsuRI	GGCC	3 cut(s)	309, 988, 1026
BsuTUI	ATCGAT	1 cut(s)	710
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	1043
BtsIMutI	CAGTG	4 cut(s)	101, 648, 1018, 1043
CaiI	CAGNNNCTG	1 cut(s)	622
Cfr10I	RCCGGY	1 cut(s)	994
Cfr13I	GGNCC	3 cut(s)	338, 371, 987
ClaI	ATCGAT	1 cut(s)	710
CsiI	ACCWGGT	1 cut(s)	621
Csp6I	GTAC	5 cut(s)	62, 384, 793, 959, 979
CspAI	ACCGGT	1 cut(s)	994
CviAII	CATG	5 cut(s)	80, 377, 634, 644, 838
CviQI	GTAC	5 cut(s)	62, 384, 793, 959, 979
DdeI	CTNAG	3 cut(s)	134, 260, 744
DpnI	GATC	4 cut(s)	455, 735, 755, 970
DpnII	GATC	4 cut(s)	453, 733, 753, 968
DraIII	CACNNNGTG	1 cut(s)	853
DriI	GACNNNNNGTC	1 cut(s)	344
Eam1105I	GACNNNNNGTC	1 cut(s)	344
Eco130I	CCWWGG	2 cut(s)	79, 768
Eco31I	GGTCTC	3 cut(s)	84, 290, 662
Eco32I	GATATC	1 cut(s)	39
Eco47I	GGWCC	2 cut(s)	338, 371
Eco57I	CTGAAG	2 cut(s)	972, 994
EcoNI	CCTNNNNNAGG	1 cut(s)	1031
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRII	CCWGG	5 cut(s)	194, 291, 480, 621, 911
EcoRV	GATATC	1 cut(s)	39
EcoT14I	CCWWGG	2 cut(s)	79, 768
ErhI	CCWWGG	2 cut(s)	79, 768
FaeI	CATG	5 cut(s)	83, 380, 637, 647, 841
FalI	AAGNNNNNCTT	2 cut(s)	992, 1024
FatI	CATG	5 cut(s)	79, 376, 633, 643, 837
FauI	CCCGC	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	740
FokI	GGATG	1 cut(s)	29
GsaI	CCCAGC	2 cut(s)	492, 783
HaeIII	GGCC	3 cut(s)	309, 988, 1026
HapII	CCGG	1 cut(s)	995
Hin1II	CATG	5 cut(s)	83, 380, 637, 647, 841
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	4 cut(s)	191, 225, 822, 869
HpaII	CCGG	1 cut(s)	995
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	4 cut(s)	123, 722, 741, 1016
Hpy188I	TCNGA	4 cut(s)	451, 523, 552, 821
Hpy188III	TCNNGA	4 cut(s)	209, 349, 473, 1000
Hpy8I	GTNNAC	4 cut(s)	123, 722, 741, 1016
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	76, 149, 959
HpyCH4III	ACNGT	2 cut(s)	120, 652
HpyCH4IV	ACGT	2 cut(s)	185, 849
HpyCH4V	TGCA	7 cut(s)	165, 423, 515, 540, 806, 865, 1048
HpyF10VI	GCNNNNNNNGC	4 cut(s)	386, 853, 862, 1054
HpyF3I	CTNAG	3 cut(s)	134, 260, 744
HpySE526I	ACGT	2 cut(s)	185, 849
Hsp92II	CATG	5 cut(s)	83, 380, 637, 647, 841
Kzo9I	GATC	4 cut(s)	453, 733, 753, 968
LmnI	GCTCC	1 cut(s)	490
LweI	GCATC	3 cut(s)	432, 884, 1057
MabI	ACCWGGT	1 cut(s)	621
MaeII	ACGT	2 cut(s)	185, 849
MaeIII	GTNAC	2 cut(s)	905, 1041
MalI	GATC	4 cut(s)	455, 735, 755, 970
MboI	GATC	4 cut(s)	453, 733, 753, 968
MboII	GAAGA	5 cut(s)	13, 266, 539, 853, 1000
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	2 cut(s)	101, 858
MluCI	AATT	5 cut(s)	171, 298, 323, 503, 1003
MroXI	GAANNNNTTC	1 cut(s)	1007
MseI	TTAA	5 cut(s)	114, 243, 501, 558, 716
MslI	CAYNNNNRTG	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	492
MspI	CCGG	1 cut(s)	995
MspR9I	CCNGG	5 cut(s)	196, 293, 482, 623, 913
MvaI	CCWGG	5 cut(s)	196, 293, 482, 623, 913
MwoI	GCNNNNNNNGC	4 cut(s)	386, 853, 862, 1054
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	4 cut(s)	453, 733, 753, 968
NlaIII	CATG	5 cut(s)	83, 380, 637, 647, 841
NlaIV	GGNNCC	2 cut(s)	340, 486
NmeAIII	GCCGAG	1 cut(s)	335
NmuCI	GTSAC	2 cut(s)	905, 1041
PasI	CCCWGGG	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	1007
PfeI	GAWTC	4 cut(s)	191, 225, 822, 869
PinAI	ACCGGT	1 cut(s)	994
Ppu21I	YACGTR	1 cut(s)	850
PpuMI	RGGWCCY	1 cut(s)	371
PsiI	TTATAA	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	5 cut(s)	194, 291, 480, 621, 911
PspFI	CCCAGC	2 cut(s)	488, 779
PspGI	CCWGG	5 cut(s)	194, 291, 480, 621, 911
PspN4I	GGNNCC	2 cut(s)	340, 486
PspPI	GGNCC	3 cut(s)	338, 371, 987
PspPPI	RGGWCCY	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	5 cut(s)	63, 385, 794, 960, 980
RsaNI	GTAC	5 cut(s)	62, 384, 793, 959, 979
RseI	CAYNNNNRTG	1 cut(s)	428
SaqAI	TTAA	5 cut(s)	114, 243, 501, 558, 716
Sau3AI	GATC	4 cut(s)	453, 733, 753, 968
Sau96I	GGNCC	3 cut(s)	338, 371, 987
ScrFI	CCNGG	5 cut(s)	196, 293, 482, 623, 913
SduI	GDGCHC	2 cut(s)	101, 858
SexAI	ACCWGGT	1 cut(s)	621
SfaNI	GCATC	3 cut(s)	432, 884, 1057
SinI	GGWCC	2 cut(s)	338, 371
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	5 cut(s)	171, 298, 323, 503, 1003
SsiI	CCGC	2 cut(s)	380, 492
SspI	AATATT	1 cut(s)	527
StyD4I	CCNGG	5 cut(s)	194, 291, 480, 621, 911
StyI	CCWWGG	2 cut(s)	79, 768
TaaI	ACNGT	2 cut(s)	120, 652
TaiI	ACGT	2 cut(s)	188, 852
TaqI	TCGA	2 cut(s)	333, 710
TaqII	GACCGA	1 cut(s)	746
TasI	AATT	5 cut(s)	171, 298, 323, 503, 1003
TatI	WGTACW	2 cut(s)	792, 958
TfiI	GAWTC	4 cut(s)	191, 225, 822, 869
Tru1I	TTAA	5 cut(s)	114, 243, 501, 558, 716
Tru9I	TTAA	5 cut(s)	114, 243, 501, 558, 716
TscAI	CASTG	4 cut(s)	101, 655, 1018, 1050
TseFI	GTSAC	2 cut(s)	905, 1041
Tsp45I	GTSAC	2 cut(s)	905, 1041
TspDTI	ATGAA	3 cut(s)	13, 58, 854
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	4 cut(s)	101, 655, 1018, 1050
VpaK11BI	GGWCC	2 cut(s)	338, 371
XagI	CCTNNNNNAGG	1 cut(s)	1031
XapI	RAATTY	2 cut(s)	323, 1003
XmiI	GTMKAC	1 cut(s)	740
XmnI	GAANNNNTTC	1 cut(s)	1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.