Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007771

Physical Location & Seq

Genomic Coordinates Reverse (-)

11498821 .. 11504397

Gene Structure 5577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19650.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAAGTTTGATTCATTGTCTTCCATTGGCTTCTTCTTCATCTTGGCTTTTGCATTCATACCATGTTCAGTTTCAGTGCCCTTCATAGTACTCCATGGCATTGGAGATCAGTGTGCTAATAGAGGAGTTAAACAGTTTACGGAGCAACTGAGGGACTTTTCAGGTGCTGAAGGATATTGCATAGAAGTTGGGGCTGGAACATGGGATTCCTGGTTTGTGCCTCTCGAGGAACAGACCAGAATTGTGTGTGAGAAGGTTAAAGAAATGGAAGAACTCAGACAAGGTTACAACATTGTTGGTCTCTCCCAGGGGAATTTGATAGGCCGAGGTGTTGTAGAATTCTGCAACAATGGACCTCTGGTTAAAAACTTTGTGTCTTTAGGAGGGCCTCATGCGGGTATTGCTTCTGTGCCGCTCTGTGGTTCTGGCATATTTTGCATTATTGTGAACAAGCTAATCAAAGGGGAGATCTATAGTGATTATATCCAAGCTCACTTGGCTCCCAGTGGTTATATTAAATTGCCCAATGCTATGACTGATTATTTAGGGAGGTGTAGGTTTCTTCCAAAACTCAACAATGAACTCCCTGATGAGAGAAACTCTACTTACAAGGAAAGATTTAGTAGCTTAGAAAACCTTGTGCTTATTATGTTTGAGCAAGACAATGTTTTGGTACCGAGAGAAACCTCATGGTTTGGATATTACCAAGATGGTGCCTTCAACTCAATTGTAGGTCCACAGCAGACTGATCTGTACACTGAAGACTGGATTGGCTTGAGAACGCTGGATGAAGCTGGAAGGGTCAAATACGTTAGTGTTTCAGGAGGTCATCTTGGAATTTCCGAAAGTGATATAAAGAAGCATGTGGTGCCTTACTTGGTAAGTTTAACATCGCCAGCAAATGGAAACGAGGTCAATGGACCTCAGCATGGAGTTGTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

315

Amino Acids

34.68

Weight (kDa)

5.22

Isoelectric Point (pI)

27.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Palm_thioest	PF02089	27 - 244	2.2e-62	Palmitoyl protein thioesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17480 AT4G17480 AT4G17480 AT4G17480
fragaria_vesca	FvH4_5g19650 FvH4_5g19650 FvH4_5g19650 FvH4_5g19650
malus_domestica	MD04G1061600.v1.1
prunus_persica	Prupe.5G063800_v2.0.a1 Prupe.5G063800_v2.0.a1
pyrus_communis	pycom04g05530 pycom06g04640
rosa_chinensis	RchiOBHm_Chr7g0204381
rosa_laevigata	RLG00000003468
rosa_multiflora	Rmu_sc0002918.1_g000006
rosa_roxburghii	Rroxscaffold_3G00253180
rosa_rugosa	Rorug07G0082700 Rorug07G0082800
rosa_samantha	Rh7AG213000 Rh7BG211100 Rh7CG226100 Rh7DG220300
rosa_wichuraiana	Rw7G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	673
AccB1I	GGYRCC	3 cut(s)	673, 713, 868
AccB7I	CCANNNNNTGG	1 cut(s)	902
AccBSI	CCGCTC	1 cut(s)	415
AciI	CCGC	2 cut(s)	395, 413
AcsI	RAATTY	3 cut(s)	313, 338, 837
AcuI	CTGAAG	2 cut(s)	189, 780
AfaI	GTAC	3 cut(s)	90, 675, 755
AfiI	CCNNNNNNNGG	4 cut(s)	395, 419, 902, 929
AgsI	TTSAA	1 cut(s)	721
AjnI	CCWGG	2 cut(s)	209, 306
AjuI	GAANNNNNNNTTGG	2 cut(s)	753, 785
AluBI	AGCT	4 cut(s)	454, 491, 627, 794
AluI	AGCT	4 cut(s)	454, 491, 627, 794
Alw26I	GTCTC	1 cut(s)	305
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	2 cut(s)	322, 386
ApoI	RAATTY	3 cut(s)	313, 338, 837
Asp718I	GGTACC	1 cut(s)	673
AspS9I	GGNCC	4 cut(s)	353, 386, 734, 920
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	3 cut(s)	353, 734, 920
BaeGI	GKGCMC	1 cut(s)	81
BanI	GGYRCC	3 cut(s)	673, 713, 868
BbsI	GAAGAC	2 cut(s)	12, 768
BbvCI	CCTCAGC	1 cut(s)	924
BccI	CCATC	1 cut(s)	704
BciT130I	CCWGG	2 cut(s)	211, 308
BcoDI	GTCTC	1 cut(s)	305
BfmI	CTRYAG	1 cut(s)	472
BglII	AGATCT	1 cut(s)	468
BisI	GCNGC	1 cut(s)	413
BlsI	GCNGC	1 cut(s)	414
BmcAI	AGTACT	1 cut(s)	90
Bme1390I	CCNGG	2 cut(s)	211, 308
Bme18I	GGWCC	3 cut(s)	353, 734, 920
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	4 cut(s)	353, 386, 734, 920
BmiI	GGNNCC	4 cut(s)	501, 675, 715, 870
BmrFI	CCNGG	2 cut(s)	211, 308
BmrI	ACTGGG	1 cut(s)	498
BmuI	ACTGGG	1 cut(s)	498
BpiI	GAAGAC	2 cut(s)	12, 768
BplI	GAGNNNNNCTC	2 cut(s)	584, 616
Bpu10I	CCTNAGC	1 cut(s)	924
BpuEI	CTTGAG	1 cut(s)	796
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	4 cut(s)	94, 306, 307, 325
Bsc4I	CCNNNNNNNGG	4 cut(s)	395, 419, 902, 929
Bse1I	ACTGG	2 cut(s)	504, 770
BseBI	CCWGG	2 cut(s)	211, 308
BseDI	CCNNGG	4 cut(s)	94, 306, 307, 325
BseGI	GGATG	1 cut(s)	793
BseLI	CCNNNNNNNGG	4 cut(s)	395, 419, 902, 929
BseMII	CTCAG	3 cut(s)	140, 289, 938
BseNI	ACTGG	2 cut(s)	504, 770
BseRI	GAGGAG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	81
BshFI	GGCC	2 cut(s)	324, 388
BshNI	GGYRCC	3 cut(s)	673, 713, 868
BsiHKCI	CYCGRG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	4 cut(s)	395, 419, 902, 929
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	324, 388
Bso31I	GGTCTC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp1407I	TGTACA	1 cut(s)	753
Bsp143I	GATC	3 cut(s)	106, 468, 748
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	2 cut(s)	395, 413
BspANI	GGCC	2 cut(s)	324, 388
BspCNI	CTCAG	3 cut(s)	141, 288, 937
BspLI	GGNNCC	4 cut(s)	501, 675, 715, 870
BspT107I	GGYRCC	3 cut(s)	673, 713, 868
BspTNI	GGTCTC	1 cut(s)	305
BsrBI	CCGCTC	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	753
BsrI	ACTGG	2 cut(s)	504, 770
BssECI	CCNNGG	4 cut(s)	94, 306, 307, 325
BssMI	GATC	3 cut(s)	106, 468, 748
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	211, 308
Bst4CI	ACNGT	1 cut(s)	135
BstAPI	GCANNNNNTGC	2 cut(s)	435, 868
BstAUI	TGTACA	1 cut(s)	753
BstC8I	GCNNGC	1 cut(s)	897
BstDEI	CTNAG	4 cut(s)	149, 275, 628, 924
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	793
BstKTI	GATC	3 cut(s)	109, 471, 751
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	3 cut(s)	106, 468, 748
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 435, 497, 868
BstNI	CCWGG	2 cut(s)	211, 308
BstNSI	RCATGY	1 cut(s)	866
BstSCI	CCNGG	2 cut(s)	209, 306
BstSFI	CTRYAG	1 cut(s)	472
BstSLI	GKGCMC	1 cut(s)	81
BstV2I	GAAGAC	2 cut(s)	12, 768
BstX2I	RGATCY	1 cut(s)	468
BstXI	CCANNNNNNTGG	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	468
BsuRI	GGCC	2 cut(s)	324, 388
BtgI	CCRYGG	1 cut(s)	94
BtgZI	GCGATG	1 cut(s)	876
BtsCI	GGATG	1 cut(s)	793
BtsIMutI	CAGTG	4 cut(s)	81, 116, 511, 756
Cac8I	GCNNGC	1 cut(s)	897
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr13I	GGNCC	4 cut(s)	353, 386, 734, 920
Csp6I	GTAC	3 cut(s)	89, 674, 754
CviAII	CATG	7 cut(s)	63, 95, 201, 392, 690, 863, 929
CviQI	GTAC	3 cut(s)	89, 674, 754
DdeI	CTNAG	4 cut(s)	149, 275, 628, 924
DpnI	GATC	3 cut(s)	108, 470, 750
DpnII	GATC	3 cut(s)	106, 468, 748
Eco130I	CCWWGG	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	305
Eco47I	GGWCC	3 cut(s)	353, 734, 920
Eco57I	CTGAAG	2 cut(s)	189, 780
Eco88I	CYCGRG	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	386
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	209, 306
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	7 cut(s)	66, 98, 204, 395, 693, 866, 932
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	7 cut(s)	62, 94, 200, 391, 689, 862, 928
FauI	CCCGC	1 cut(s)	388
Fnu4HI	GCNGC	1 cut(s)	413
FokI	GGATG	1 cut(s)	800
Fsp4HI	GCNGC	1 cut(s)	413
GluI	GCNGC	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	324, 388
Hin1II	CATG	7 cut(s)	66, 98, 204, 395, 693, 866, 932
HinfI	GANTC	2 cut(s)	11, 206
Hpy166II	GTNNAC	4 cut(s)	138, 448, 737, 756
Hpy188I	TCNGA	2 cut(s)	278, 844
Hpy188III	TCNNGA	2 cut(s)	224, 822
Hpy8I	GTNNAC	4 cut(s)	138, 448, 737, 756
HpyAV	CCTTC	5 cut(s)	91, 164, 247, 727, 792
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	810
HpyCH4V	TGCA	4 cut(s)	53, 180, 345, 438
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 435, 497, 868
HpyF3I	CTNAG	4 cut(s)	149, 275, 628, 924
HpySE526I	ACGT	1 cut(s)	810
Hsp92II	CATG	7 cut(s)	66, 98, 204, 395, 693, 866, 932
KpnI	GGTACC	1 cut(s)	677
Kzo9I	GATC	3 cut(s)	106, 468, 748
LmnI	GCTCC	2 cut(s)	142, 505
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	3 cut(s)	108, 470, 750
MbiI	CCGCTC	1 cut(s)	415
MboI	GATC	3 cut(s)	106, 468, 748
MboII	GAAGA	6 cut(s)	12, 25, 28, 281, 554, 773
MfeI	CAATTG	1 cut(s)	726
MflI	RGATCY	1 cut(s)	468
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	7 cut(s)	240, 313, 338, 518, 726, 837, 940
MseI	TTAA	6 cut(s)	129, 258, 363, 516, 887, 943
MslI	CAYNNNNRTG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	211, 308
MunI	CAATTG	1 cut(s)	726
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	2 cut(s)	211, 308
MwoI	GCNNNNNNNGC	4 cut(s)	401, 435, 497, 868
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	3 cut(s)	106, 468, 748
NlaIII	CATG	7 cut(s)	66, 98, 204, 395, 693, 866, 932
NlaIV	GGNNCC	4 cut(s)	501, 675, 715, 870
NmeAIII	GCCGAG	1 cut(s)	350
NspI	RCATGY	1 cut(s)	866
PaeR7I	CTCGAG	1 cut(s)	224
PasI	CCCWGGG	1 cut(s)	307
PctI	GAATGC	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	11, 206
PflMI	CCANNNNNTGG	1 cut(s)	902
PkrI	GCNGC	1 cut(s)	414
Psp6I	CCWGG	2 cut(s)	209, 306
PspGI	CCWGG	2 cut(s)	209, 306
PspN4I	GGNNCC	4 cut(s)	501, 675, 715, 870
PspPI	GGNCC	4 cut(s)	353, 386, 734, 920
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	468
RsaI	GTAC	3 cut(s)	90, 675, 755
RsaNI	GTAC	3 cut(s)	89, 674, 754
RseI	CAYNNNNRTG	1 cut(s)	443
SaqAI	TTAA	6 cut(s)	129, 258, 363, 516, 887, 943
SatI	GCNGC	1 cut(s)	413
Sau3AI	GATC	3 cut(s)	106, 468, 748
Sau96I	GGNCC	4 cut(s)	353, 386, 734, 920
ScaI	AGTACT	1 cut(s)	90
ScrFI	CCNGG	2 cut(s)	211, 308
SduI	GDGCHC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	472
Sfr274I	CTCGAG	1 cut(s)	224
SinI	GGWCC	3 cut(s)	353, 734, 920
SlaI	CTCGAG	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	2 cut(s)	224, 775
SmoI	CTYRAG	2 cut(s)	224, 775
Sse9I	AATT	7 cut(s)	240, 313, 338, 518, 726, 837, 940
SsiI	CCGC	2 cut(s)	395, 413
StyD4I	CCNGG	2 cut(s)	209, 306
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	1 cut(s)	225
TasI	AATT	7 cut(s)	240, 313, 338, 518, 726, 837, 940
TatI	WGTACW	2 cut(s)	88, 753
TauI	GCSGC	1 cut(s)	415
TfiI	GAWTC	2 cut(s)	11, 206
Tru1I	TTAA	6 cut(s)	129, 258, 363, 516, 887, 943
Tru9I	TTAA	6 cut(s)	129, 258, 363, 516, 887, 943
TscAI	CASTG	4 cut(s)	81, 116, 511, 763
TspDTI	ATGAA	6 cut(s)	17, 28, 46, 73, 594, 804
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	4 cut(s)	81, 116, 511, 763
Van91I	CCANNNNNTGG	1 cut(s)	902
VpaK11BI	GGWCC	3 cut(s)	353, 734, 920
XapI	RAATTY	3 cut(s)	313, 338, 837
XceI	RCATGY	1 cut(s)	866
XhoI	CTCGAG	1 cut(s)	224
ZrmI	AGTACT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.