Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017180

Physical Location & Seq

Genomic Coordinates Forward (+)

9871761 .. 9873398

Gene Structure 1638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAGTTCGTCCTCGTCGCCGGCGATTGAACCAGACACACCGGACCTGATTTGCCAGCTCGATAATGTTCAAGGAATGGTCGATGCACTCACTTGCGTCCGATGGAAACGCCACCAGGATGCTTTAGTAGAATTATCTGAACACGGAATAGTTTTGATTGTTGAAGAATCAGGTTGTCTTCAAGCCAAAGTTTATCTTCAACGCGAGCTATTCACGAAATACGAGTATGGAGCTCAAGGTAGGCCGAGATTCGGAATCAGCTTAGGGCTTCTTGTTGATTGCTTGAACACATTTTCATCACCTGGACATTCTAATACTATAGAAATCAAGTATCCAGGACCTGATATGGAGCTTCTTCTCAAATCTGTTGATACCTTAAACTCTTGCATCTACTCTGAGATAAGAACTAGAATTCCCGAAACTGTTACTTGGGACTACAACTTTGAGCAGGCGGGAATCGCGCCACTTACTTTTACAGTAAAGTCAGCGGCGTTGAAGGAAGCAATAGATGATCTTGAATGGCCTGGTTCAAGTGTACAGATCAGTCTTCAAAAGGAACCCCCTTGTGTAATCTTTAGAGGAGAAGGACATGGAGACTTGCAGATAGACTTCATGTATTATGCCAACACAGATCTTCTCCTTGCCTTTCATTGTGATACCGAAGTCTCTTACGGGTACAAATACAAGTTTTTGAAAGCAACAACGGCAAACATACCGGGAAACGTAGTGAGAGAAAACAGGGGAAGCAAACTAACAATAGGAAGAGGAGGAATGTTGAAAGTTCAGCACTTGGTTTCAGTTTCTAAAGCTTTAGCTCCACAAGTGGAATCCGCAGGGTATCAGCCACCGAGTCGGATTGCTTATATAGAGTTCTTTGTGAAGCCTGAAGAGCCTGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0008408 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010564 GO:0010639 GO:0010948 GO:0016787 GO:0016788 GO:0022402 GO:0022414 GO:0030896 GO:0031570 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033313 GO:0033554 GO:0034641 GO:0040020 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045786 GO:0045835 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051321 GO:0051445 GO:0051447 GO:0051598 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1903046 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04111 ko04113 ko04218 map04111 map04113 map04218

Pfam Domains

Protein Families

Rad1

Protein Analysis

300

Amino Acids

33.32

Weight (kDa)

5.09

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad1	PF02144	18 - 235	9.8e-27	Repair protein Rad1/Rec1/Rad17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17760
fragaria_vesca	FvH4_5g22650
malus_domestica	MD11G1183600.v1.1
prunus_persica	Prupe.4G270400_v2.0.a1 Prupe.4G270400_v2.0.a1
pyrus_communis	pycom12561g00220
rosa_chinensis	RchiOBHm_Chr7g0211071
rosa_laevigata	RLG00000003024
rosa_multiflora	Rmu_sc0012670.1_g000005
rosa_roxburghii	Rroxscaffold_3G00248130
rosa_rugosa	Rorug07G0124100
rosa_samantha	Rh7AG256700
rosa_wichuraiana	Rw7G021890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	204, 461
AciI	CCGC	3 cut(s)	452, 488, 831
AcsI	RAATTY	1 cut(s)	411
AfaI	GTAC	2 cut(s)	537, 677
AfiI	CCNNNNNNNGG	1 cut(s)	251
AjnI	CCWGG	4 cut(s)	114, 301, 334, 523
AloI	GAACNNNNNNTCC	2 cut(s)	397, 429
AluBI	AGCT	7 cut(s)	58, 208, 233, 261, 352, 809, 815
AluI	AGCT	7 cut(s)	58, 208, 233, 261, 352, 809, 815
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	2 cut(s)	588, 670
AlwNI	CAGNNNCTG	1 cut(s)	341
AoxI	GGCC	2 cut(s)	242, 521
ApoI	RAATTY	1 cut(s)	411
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	2 cut(s)	43, 338
AsuC2I	CCSGG	1 cut(s)	717
AsuHPI	GGTGA	1 cut(s)	291
AvaII	GGWCC	2 cut(s)	43, 338
BaeI	ACNNNNGTAYC	2 cut(s)	648, 681
BanII	GRGCYC	1 cut(s)	235
BbsI	GAAGAC	2 cut(s)	170, 539
Bbv12I	GWGCWC	1 cut(s)	235
BccI	CCATC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	720
BciT130I	CCWGG	4 cut(s)	116, 303, 336, 525
BciVI	GTATCC	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	717
BcoDI	GTCTC	2 cut(s)	588, 670
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	342
BglII	AGATCT	1 cut(s)	631
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
Bme1390I	CCNGG	5 cut(s)	116, 303, 336, 525, 717
Bme18I	GGWCC	2 cut(s)	43, 338
BmgT120I	GGNCC	2 cut(s)	43, 338
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	5 cut(s)	116, 303, 336, 525, 717
BmsI	GCATC	3 cut(s)	73, 109, 396
BpiI	GAAGAC	2 cut(s)	170, 539
Bpu10I	CCTNAGC	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	717
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse118I	RCCGGY	1 cut(s)	19
BseBI	CCWGG	4 cut(s)	116, 303, 336, 525
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	387
BseRI	GAGGAG	2 cut(s)	594, 780
Bsh1236I	CGCG	2 cut(s)	204, 461
BshFI	GGCC	2 cut(s)	244, 523
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	3 cut(s)	20, 41, 716
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	2 cut(s)	588, 670
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	244, 523
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp1407I	TGTACA	1 cut(s)	535
Bsp143I	GATC	3 cut(s)	511, 540, 631
BspACI	CCGC	3 cut(s)	452, 488, 831
BspANI	GGCC	2 cut(s)	244, 523
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	2 cut(s)	204, 461
BspLI	GGNNCC	1 cut(s)	558
BspQI	GCTCTTC	1 cut(s)	882
BsrFI	RCCGGY	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	535
BssAI	RCCGGY	1 cut(s)	19
BssMI	GATC	3 cut(s)	511, 540, 631
Bst2UI	CCWGG	4 cut(s)	116, 303, 336, 525
Bst4CI	ACNGT	2 cut(s)	424, 478
Bst6I	CTCTTC	2 cut(s)	757, 882
BstAUI	TGTACA	1 cut(s)	535
BstC8I	GCNNGC	5 cut(s)	21, 56, 206, 450, 894
BstDEI	CTNAG	2 cut(s)	262, 396
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	2 cut(s)	204, 461
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	3 cut(s)	514, 543, 634
BstMAI	GTCTC	2 cut(s)	588, 670
BstMBI	GATC	3 cut(s)	511, 540, 631
BstMWI	GCNNNNNNNGC	3 cut(s)	458, 704, 889
BstNI	CCWGG	4 cut(s)	116, 303, 336, 525
BstSCI	CCNGG	5 cut(s)	114, 301, 334, 523, 715
BstSFI	CTRYAG	1 cut(s)	318
BstUI	CGCG	2 cut(s)	204, 461
BstV2I	GAAGAC	2 cut(s)	170, 539
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	244, 523
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	5 cut(s)	21, 56, 206, 450, 894
CaiI	CAGNNNCTG	1 cut(s)	341
CfoI	GCGC	1 cut(s)	463
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	43, 338
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	536, 676
CviAII	CATG	2 cut(s)	590, 613
CviQI	GTAC	2 cut(s)	536, 676
DdeI	CTNAG	2 cut(s)	262, 396
DpnI	GATC	3 cut(s)	513, 542, 633
DpnII	GATC	3 cut(s)	511, 540, 631
Eam1104I	CTCTTC	2 cut(s)	757, 882
EarI	CTCTTC	2 cut(s)	757, 882
Ecl136II	GAGCTC	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	43, 338
Eco53kI	GAGCTC	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	411
EcoRII	CCWGG	4 cut(s)	114, 301, 334, 523
EcoT38I	GRGCYC	1 cut(s)	235
FaeI	CATG	2 cut(s)	593, 616
FaiI	YATR	9 cut(s)	228, 320, 347, 591, 614, 621, 713, 864, 866
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	2 cut(s)	589, 612
FauI	CCCGC	1 cut(s)	445
Fnu4HI	GCNGC	1 cut(s)	489
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	1 cut(s)	489
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	244, 523
HapII	CCGG	3 cut(s)	20, 41, 716
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	1 cut(s)	463
Hin1II	CATG	2 cut(s)	593, 616
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HindIII	AAGCTT	1 cut(s)	807
HinfI	GANTC	6 cut(s)	167, 249, 255, 456, 827, 850
HpaII	CCGG	3 cut(s)	20, 41, 716
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	1 cut(s)	536
Hpy188I	TCNGA	5 cut(s)	101, 139, 254, 397, 855
Hpy188III	TCNNGA	3 cut(s)	214, 416, 515
Hpy8I	GTNNAC	1 cut(s)	536
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	490, 578
HpyCH4III	ACNGT	2 cut(s)	424, 478
HpyCH4IV	ACGT	1 cut(s)	723
HpyCH4V	TGCA	3 cut(s)	86, 387, 601
HpyF10VI	GCNNNNNNNGC	3 cut(s)	458, 704, 889
HpyF3I	CTNAG	2 cut(s)	262, 396
HpySE526I	ACGT	1 cut(s)	723
Hsp92II	CATG	2 cut(s)	593, 616
HspAI	GCGC	1 cut(s)	461
KroI	GCCGGC	1 cut(s)	19
KroNI	GCCGGC	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	511, 540, 631
LguI	GCTCTTC	1 cut(s)	882
LmnI	GCTCC	3 cut(s)	230, 349, 820
LweI	GCATC	3 cut(s)	73, 109, 396
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	723
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	3 cut(s)	513, 542, 633
MboI	GATC	3 cut(s)	511, 540, 631
MboII	GAAGA	8 cut(s)	170, 176, 188, 347, 539, 626, 774, 899
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	2 cut(s)	131, 411
MlyI	GAGTC	1 cut(s)	859
MmeI	TCCRAC	1 cut(s)	833
MnlI	CCTC	4 cut(s)	22, 572, 758, 761
MreI	CGCCGGCG	1 cut(s)	19
MroNI	GCCGGC	1 cut(s)	19
MseI	TTAA	2 cut(s)	377, 901
MslI	CAYNNNNRTG	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	3 cut(s)	20, 41, 716
MspR9I	CCNGG	5 cut(s)	116, 303, 336, 525, 717
MvaI	CCWGG	4 cut(s)	116, 303, 336, 525
MvnI	CGCG	2 cut(s)	204, 461
MwoI	GCNNNNNNNGC	3 cut(s)	458, 704, 889
NaeI	GCCGGC	1 cut(s)	21
NciI	CCSGG	1 cut(s)	717
NdeII	GATC	3 cut(s)	511, 540, 631
NgoMIV	GCCGGC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	593, 616
NlaIV	GGNNCC	1 cut(s)	558
NmeAIII	GCCGAG	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	882
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PdiI	GCCGGC	1 cut(s)	21
PfeI	GAWTC	5 cut(s)	167, 249, 255, 456, 827
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	490
PleI	GAGTC	1 cut(s)	858
PpsI	GAGTC	1 cut(s)	858
PpuMI	RGGWCCY	1 cut(s)	338
Psp124BI	GAGCTC	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	338
Psp6I	CCWGG	4 cut(s)	114, 301, 334, 523
PspGI	CCWGG	4 cut(s)	114, 301, 334, 523
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	2 cut(s)	43, 338
PspPPI	RGGWCCY	1 cut(s)	338
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	2 cut(s)	537, 677
RsaNI	GTAC	2 cut(s)	536, 676
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	235
SapI	GCTCTTC	1 cut(s)	882
SaqAI	TTAA	2 cut(s)	377, 901
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	3 cut(s)	511, 540, 631
Sau96I	GGNCC	2 cut(s)	43, 338
SchI	GAGTC	1 cut(s)	859
ScrFI	CCNGG	5 cut(s)	116, 303, 336, 525, 717
SduI	GDGCHC	1 cut(s)	235
SfaNI	GCATC	3 cut(s)	73, 109, 396
SfcI	CTRYAG	1 cut(s)	318
SgrAI	CRCCGGYG	1 cut(s)	19
SinI	GGWCC	2 cut(s)	43, 338
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
Sse9I	AATT	2 cut(s)	131, 411
SsiI	CCGC	3 cut(s)	452, 488, 831
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	235
StyD4I	CCNGG	5 cut(s)	114, 301, 334, 523, 715
TaaI	ACNGT	2 cut(s)	424, 478
TaiI	ACGT	1 cut(s)	726
TaqI	TCGA	2 cut(s)	60, 81
TasI	AATT	2 cut(s)	131, 411
TatI	WGTACW	1 cut(s)	535
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	5 cut(s)	167, 249, 255, 456, 827
Tru1I	TTAA	2 cut(s)	377, 901
Tru9I	TTAA	2 cut(s)	377, 901
TspDTI	ATGAA	3 cut(s)	285, 601, 638
TspGWI	ACGGA	1 cut(s)	159
VpaK11BI	GGWCC	2 cut(s)	43, 338
XapI	RAATTY	1 cut(s)	411
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.