Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017180

Physical Location & Seq

Genomic Coordinates Forward (+)

41425623 .. 41428362

Gene Structure 2740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAACCCGTCGCCGTCGGAATCGGAGGCCGAGGAAGCCCCCGATCTGGTGTGCCAGCTCGACAACGTCCAGGGCATGGTCGACGCCTTCACCACCGTCCGATGGAAGCGCCATCAGGACGCCGTCGTGGAGCTATCGGAGCACGGCGTCGTTTTGATTGTCGAGGAAACCGGTTGTCTTCAGGCCAAAGTGTATCTGCAGCGCGAGCTTTTTGTTCGTTACGAATTCAAAGGGCATGGGCGGCCCAGGTTTGGAGTGAGTTTGGGCCTCTTTGTGGATTGCTTGAACACATTTTCAGTTCCTGGAAAATCAAGTGTAATTGAGATTCAATATCCCGGTCCTGATATGCAGCTTCTTGTCAAGTCTGTTGATTCATTGGAATCTTGCATTTATGCCGAGATCAGGACAAGAATCCCAGATACAGTTTCGTGGGACTACAATTTTGAACCAGCAGGGAGCACCCCCATCTCTTTTACTGTTAAGTGCAAGTGTGCCACAAATGAGACTAAAATGGAAGCACTGAAAGAAGCGATTGATGATCTTGAATGGCCTGGATCAAGCATCCAGATCAGCCTACAACCAAATCCTCCTACTGTTACCTTCAGAGGTGAAGGCCATGGAGATTTACAGATAGACTTTACATACTATGTCAATACTGATCTCTTGGTTGCATTTCAATGTGATCGTCAAGTATCTTACAGGTATAAATACAAGTTCCTTCGAGCAACAACTTCAAACATTCCCAGCACCGTCATTAAAGATAACAGAGGAAGCAAGTTGACTATTGGGAGAGGTGGATTGCTGAAAGTACAGCACTTAGTTTCAGTGGCAAGACCAACTACTTCACACCAGCGCATAGACTCTGCTGGATATCAACAACCAAGTCGAATTGCCTATATTGAATTCTTCGTGAAACCGGAGGAAGATGAAGCCACAATACATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0008408 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010564 GO:0010639 GO:0010948 GO:0016787 GO:0016788 GO:0022402 GO:0022414 GO:0030896 GO:0031570 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033313 GO:0033554 GO:0034641 GO:0040020 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045786 GO:0045835 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051321 GO:0051445 GO:0051447 GO:0051598 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1903046 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04111 ko04113 ko04218 map04111 map04113 map04218

Pfam Domains

Protein Families

Rad1

Protein Analysis

315

Amino Acids

35.41

Weight (kDa)

5.28

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad1	PF02144	17 - 245	1.2e-19	Repair protein Rad1/Rec1/Rad17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0017180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17760
fragaria_vesca	FvH4_5g22650
malus_domestica	MD11G1183600.v1.1
prunus_persica	Prupe.4G270400_v2.0.a1 Prupe.4G270400_v2.0.a1
pyrus_communis	pycom12561g00220
rosa_chinensis	RchiOBHm_Chr7g0211071
rosa_laevigata	RLG00000003024
rosa_multiflora	Rmu_sc0012670.1_g000005
rosa_roxburghii	Rroxscaffold_3G00248130
rosa_rugosa	Rorug07G0124100
rosa_samantha	Rh7AG256700
rosa_wichuraiana	Rw7G021890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	1 cut(s)	204
AciI	CCGC	1 cut(s)	241
AclWI	GGATC	1 cut(s)	562
AcsI	RAATTY	2 cut(s)	224, 902
AcuI	CTGAAG	2 cut(s)	164, 586
AcyI	GRCGYC	3 cut(s)	84, 120, 147
AfaI	GTAC	1 cut(s)	810
AfiI	CCNNNNNNNGG	6 cut(s)	46, 76, 102, 251, 274, 402
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	8 cut(s)	229, 286, 329, 446, 545, 677, 735, 902
AjnI	CCWGG	4 cut(s)	69, 245, 301, 550
AluBI	AGCT	4 cut(s)	58, 133, 208, 352
AluI	AGCT	4 cut(s)	58, 133, 208, 352
Alw21I	GWGCWC	2 cut(s)	144, 461
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	1 cut(s)	562
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	6 cut(s)	27, 183, 242, 265, 548, 613
ApeKI	GCWGC	2 cut(s)	199, 349
ApoI	RAATTY	2 cut(s)	224, 902
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AsiGI	ACCGGT	1 cut(s)	170
AspLEI	GCGC	3 cut(s)	111, 204, 855
AspS9I	GGNCC	3 cut(s)	243, 265, 338
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	2 cut(s)	82, 620
AvaII	GGWCC	1 cut(s)	338
BarI	GAAGNNNNNNTAC	1 cut(s)	921
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	2 cut(s)	144, 461
BbvI	GCAGC	2 cut(s)	211, 361
BccI	CCATC	3 cut(s)	96, 120, 473
BceAI	ACGGC	2 cut(s)	107, 160
BciT130I	CCWGG	4 cut(s)	71, 247, 303, 552
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	497
BfmI	CTRYAG	1 cut(s)	197
BfoI	RGCGCY	1 cut(s)	112
BisI	GCNGC	3 cut(s)	200, 242, 350
BlsI	GCNGC	3 cut(s)	201, 243, 351
Bme1390I	CCNGG	5 cut(s)	71, 247, 303, 336, 552
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	3 cut(s)	243, 265, 338
BmrFI	CCNGG	5 cut(s)	71, 247, 303, 336, 552
BmsI	GCATC	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	336
BsaHI	GRCGYC	3 cut(s)	84, 120, 147
BsaJI	CCNNGG	4 cut(s)	30, 70, 245, 616
BsaWI	WCCGGW	2 cut(s)	170, 916
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 76, 102, 251, 274, 402
Bse118I	RCCGGY	1 cut(s)	170
BseBI	CCWGG	4 cut(s)	71, 247, 303, 552
BseDI	CCNNGG	4 cut(s)	30, 70, 245, 616
BseGI	GGATG	1 cut(s)	561
BseLI	CCNNNNNNNGG	6 cut(s)	46, 76, 102, 251, 274, 402
BseXI	GCAGC	2 cut(s)	211, 361
BseYI	CCCAGC	1 cut(s)	743
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	6 cut(s)	29, 185, 244, 267, 550, 615
BshTI	ACCGGT	1 cut(s)	170
BsiHKAI	GWGCWC	2 cut(s)	144, 461
BsiSI	CCGG	3 cut(s)	171, 336, 917
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	6 cut(s)	46, 76, 102, 251, 274, 402
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	6 cut(s)	29, 185, 244, 267, 550, 615
Bsp1286I	GDGCHC	2 cut(s)	144, 461
Bsp143I	GATC	7 cut(s)	43, 399, 538, 554, 567, 658, 682
Bsp19I	CCATGG	1 cut(s)	616
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	6 cut(s)	29, 185, 244, 267, 550, 615
BspFNI	CGCG	1 cut(s)	204
BspMAI	CTGCAG	1 cut(s)	201
BspPI	GGATC	1 cut(s)	562
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	4 cut(s)	30, 70, 245, 616
BssMI	GATC	7 cut(s)	43, 399, 538, 554, 567, 658, 682
BssNI	GRCGYC	3 cut(s)	84, 120, 147
BssT1I	CCWWGG	1 cut(s)	616
Bst2UI	CCWGG	4 cut(s)	71, 247, 303, 552
Bst4CI	ACNGT	5 cut(s)	97, 424, 478, 595, 751
BstACI	GRCGYC	3 cut(s)	84, 120, 147
BstC8I	GCNNGC	2 cut(s)	56, 206
BstDEI	CTNAG	1 cut(s)	817
BstDSI	CCRYGG	1 cut(s)	616
BstF5I	GGATG	1 cut(s)	561
BstFNI	CGCG	1 cut(s)	204
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	3 cut(s)	111, 204, 855
BstKTI	GATC	7 cut(s)	46, 402, 541, 557, 570, 661, 685
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	7 cut(s)	43, 399, 538, 554, 567, 658, 682
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 139, 205, 241
BstNI	CCWGG	4 cut(s)	71, 247, 303, 552
BstSCI	CCNGG	5 cut(s)	69, 245, 301, 334, 550
BstSFI	CTRYAG	1 cut(s)	197
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	211, 361
BstV2I	GAAGAC	1 cut(s)	170
BsuRI	GGCC	6 cut(s)	29, 185, 244, 267, 550, 615
BtgI	CCRYGG	1 cut(s)	616
BtsCI	GGATG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	518, 831
Cac8I	GCNNGC	2 cut(s)	56, 206
CaiI	CAGNNNCTG	1 cut(s)	302
CfoI	GCGC	3 cut(s)	111, 204, 855
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	243, 265, 338
CseI	GACGC	3 cut(s)	92, 128, 136
Csp6I	GTAC	1 cut(s)	809
CspAI	ACCGGT	1 cut(s)	170
CviAII	CATG	4 cut(s)	76, 236, 617, 941
CviQI	GTAC	1 cut(s)	809
DdeI	CTNAG	1 cut(s)	817
DpnI	GATC	7 cut(s)	45, 401, 540, 556, 569, 660, 684
DpnII	GATC	7 cut(s)	43, 399, 538, 554, 567, 658, 682
Eco130I	CCWWGG	1 cut(s)	616
Eco32I	GATATC	1 cut(s)	872
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	2 cut(s)	164, 586
EcoRI	GAATTC	2 cut(s)	224, 902
EcoRII	CCWGG	4 cut(s)	69, 245, 301, 550
EcoRV	GATATC	1 cut(s)	872
EcoT14I	CCWWGG	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	4 cut(s)	79, 239, 620, 944
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	4 cut(s)	75, 235, 616, 940
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	3 cut(s)	200, 242, 350
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	3 cut(s)	200, 242, 350
GlaI	GCGC	3 cut(s)	110, 203, 854
GluI	GCNGC	3 cut(s)	200, 242, 350
GsaI	CCCAGC	1 cut(s)	747
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	6 cut(s)	29, 185, 244, 267, 550, 615
HapII	CCGG	3 cut(s)	171, 336, 917
HgaI	GACGC	3 cut(s)	92, 128, 136
HhaI	GCGC	3 cut(s)	111, 204, 855
Hin1I	GRCGYC	3 cut(s)	84, 120, 147
Hin1II	CATG	4 cut(s)	79, 239, 620, 944
Hin6I	GCGC	3 cut(s)	109, 202, 853
HinP1I	GCGC	3 cut(s)	109, 202, 853
HincII	GTYRAC	2 cut(s)	82, 780
HindII	GTYRAC	2 cut(s)	82, 780
HinfI	GANTC	6 cut(s)	20, 325, 371, 380, 411, 860
HpaII	CCGG	3 cut(s)	171, 336, 917
HphI	GGTGA	2 cut(s)	82, 620
Hpy166II	GTNNAC	2 cut(s)	82, 780
Hpy188I	TCNGA	5 cut(s)	19, 25, 101, 139, 605
Hpy188III	TCNNGA	6 cut(s)	116, 341, 403, 542, 565, 910
Hpy8I	GTNNAC	2 cut(s)	82, 780
Hpy99I	CGWCG	5 cut(s)	13, 19, 86, 128, 152
HpyAV	CCTTC	4 cut(s)	97, 605, 610, 728
HpyCH4III	ACNGT	5 cut(s)	97, 424, 478, 595, 751
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	5 cut(s)	199, 349, 387, 486, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 139, 205, 241
HpyF3I	CTNAG	1 cut(s)	817
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	3 cut(s)	84, 120, 147
Hsp92II	CATG	4 cut(s)	79, 239, 620, 944
HspAI	GCGC	3 cut(s)	109, 202, 853
Kzo9I	GATC	7 cut(s)	43, 399, 538, 554, 567, 658, 682
LmnI	GCTCC	3 cut(s)	130, 139, 456
Lsp1109I	GCAGC	2 cut(s)	211, 361
LweI	GCATC	1 cut(s)	570
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	218, 595
MalI	GATC	7 cut(s)	45, 401, 540, 556, 569, 660, 684
MboI	GATC	7 cut(s)	43, 399, 538, 554, 567, 658, 682
MboII	GAAGA	3 cut(s)	170, 898, 935
MhlI	GDGCHC	2 cut(s)	144, 461
MluCI	AATT	5 cut(s)	224, 318, 439, 888, 902
MlyI	GAGTC	1 cut(s)	854
MnlI	CCTC	9 cut(s)	19, 25, 157, 278, 597, 599, 761, 785, 913
MseI	TTAA	2 cut(s)	480, 756
MslI	CAYNNNNRTG	1 cut(s)	676
MspI	CCGG	3 cut(s)	171, 336, 917
MspR9I	CCNGG	5 cut(s)	71, 247, 303, 336, 552
MvaI	CCWGG	4 cut(s)	71, 247, 303, 552
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	4 cut(s)	35, 139, 205, 241
NciI	CCSGG	1 cut(s)	336
NcoI	CCATGG	1 cut(s)	616
NdeII	GATC	7 cut(s)	43, 399, 538, 554, 567, 658, 682
NlaIII	CATG	4 cut(s)	79, 239, 620, 944
NmeAIII	GCCGAG	2 cut(s)	55, 421
PfeI	GAWTC	5 cut(s)	20, 325, 371, 380, 411
PflFI	GACNNNGTC	2 cut(s)	65, 122
PflMI	CCANNNNNTGG	1 cut(s)	76
PfoI	TCCNGGA	1 cut(s)	301
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	201, 243, 351
PleI	GAGTC	1 cut(s)	854
PpsI	GAGTC	1 cut(s)	854
Psp6I	CCWGG	4 cut(s)	69, 245, 301, 550
PspFI	CCCAGC	1 cut(s)	743
PspGI	CCWGG	4 cut(s)	69, 245, 301, 550
PspPI	GGNCC	3 cut(s)	243, 265, 338
PstI	CTGCAG	1 cut(s)	201
PstNI	CAGNNNCTG	1 cut(s)	302
PsyI	GACNNNGTC	2 cut(s)	65, 122
RsaI	GTAC	1 cut(s)	810
RsaNI	GTAC	1 cut(s)	809
RseI	CAYNNNNRTG	1 cut(s)	676
SalI	GTCGAC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	480, 756
SatI	GCNGC	3 cut(s)	200, 242, 350
Sau3AI	GATC	7 cut(s)	43, 399, 538, 554, 567, 658, 682
Sau96I	GGNCC	3 cut(s)	243, 265, 338
SchI	GAGTC	1 cut(s)	854
ScrFI	CCNGG	5 cut(s)	71, 247, 303, 336, 552
SduI	GDGCHC	2 cut(s)	144, 461
SfaNI	GCATC	1 cut(s)	570
SfcI	CTRYAG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	676
Sse9I	AATT	5 cut(s)	224, 318, 439, 888, 902
SsiI	CCGC	1 cut(s)	241
StyD4I	CCNGG	5 cut(s)	69, 245, 301, 334, 550
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	5 cut(s)	97, 424, 478, 595, 751
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	5 cut(s)	60, 81, 162, 721, 886
TasI	AATT	5 cut(s)	224, 318, 439, 888, 902
TatI	WGTACW	1 cut(s)	808
TauI	GCSGC	1 cut(s)	244
TfiI	GAWTC	5 cut(s)	20, 325, 371, 380, 411
Tru1I	TTAA	2 cut(s)	480, 756
Tru9I	TTAA	2 cut(s)	480, 756
TscAI	CASTG	2 cut(s)	525, 831
TseI	GCWGC	2 cut(s)	199, 349
TspDTI	ATGAA	3 cut(s)	17, 363, 942
TspRI	CASTG	2 cut(s)	525, 831
Tth111I	GACNNNGTC	2 cut(s)	65, 122
Van91I	CCANNNNNTGG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	2 cut(s)	224, 902
XmiI	GTMKAC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.