Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0017180

Physical Location & Seq

Genomic Coordinates Forward (+)

21862325 .. 21865760

Gene Structure 3436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G270400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAACTCGCCGTCGTCGTCGGCAGAAGAAGCCCCTGATCTGGTGTGCCAGCTCGACAACGTCCAGGGTATGGTCGATGCCCTCACCACCGTCCGCTGGAAACGCCAGCAGGACGCAGTCATGGAATTATCAGAACACGGCGTCGTTTTAATTGTCGAGGAAACCGGTTGTCTTCAGGCCAAAGTTTATCTCCAGCGTGAGCTTTTTACTCGTTATGAATACAACGGGCAAGGTCGGCCCAGGTTTGGAGTCAGTTTGGGGCTCTTTGTGGATTGTTTGAACACATTTTCAGTTCCTGGACAATCAAGCATTCTAGAAATTCGATATCCGGGGCCCGACATGCAGCTTCTTCTCAAGTCTGTTGATTCGTTGGATGCTTGCATTTATGCAGAGATCAGGACAAGAATCCCAGATACAGTTTCTTGGGACTACAATTTTGAACCTGCAGGGAGCACCCCACTCACTTTCACTGTTAAGTCTGCAGCGTTGAAGGAAGCAATTGATGATCTTGAGTGGCCTGGATCAAGCATCCAGATCAATCTACAACCAGTTCCTCCTATCGTTACCTTCAGAGGTGAAGGCCATGGGGATTTGCAGATAGACTTGATGTATTATGTGAATACTGATCTTTTGGTTGCATTTCATTGTGATCGTCAAGTATCTTACAAGTACAAATACAAGTTCCTTCGAGCTACAACTTCTAACATTCCAGGCAGCGTAATTAAAGATAATAGAGGAAGCAAGTTGACTATTGGGAGAGGTGGATTGCTGAAAGTTCAACACCTTGTTTCAGTGGCAAGGCCGTCCACTTCACACCCACGTATCGATTCTGCTGGATATCAGCAACCTAGTCGAATTGCTTATATTGAATTCTTTGTGAAACCGGAGGAAGATGAAGACGCTGCAAACAATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0008408 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010564 GO:0010639 GO:0010948 GO:0016787 GO:0016788 GO:0022402 GO:0022414 GO:0030896 GO:0031570 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033313 GO:0033554 GO:0034641 GO:0040020 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045786 GO:0045835 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051321 GO:0051445 GO:0051447 GO:0051598 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1903046 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04111 ko04113 ko04218 map04111 map04113 map04218

Pfam Domains

Protein Families

Rad1

Protein Analysis

306

Amino Acids

34.07

Weight (kDa)

5.13

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17760
fragaria_vesca	FvH4_5g22650
malus_domestica	MD11G1183600.v1.1
prunus_persica	Prupe.4G270400_v2.0.a1 Prupe.4G270400_v2.0.a1
pyrus_communis	pycom12561g00220
rosa_chinensis	RchiOBHm_Chr7g0211071
rosa_laevigata	RLG00000003024
rosa_multiflora	Rmu_sc0012670.1_g000005
rosa_roxburghii	Rroxscaffold_3G00248130
rosa_rugosa	Rorug07G0124100
rosa_samantha	Rh7AG256700
rosa_wichuraiana	Rw7G021890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	451
AccB7I	CCANNNNNTGG	1 cut(s)	70
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	1 cut(s)	529
AcsI	RAATTY	2 cut(s)	318, 869
AcuI	CTGAAG	2 cut(s)	158, 553
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	671
AfiI	CCNNNNNNNGG	4 cut(s)	40, 70, 96, 245
AgeI	ACCGGT	1 cut(s)	164
AgsI	TTSAA	5 cut(s)	280, 440, 490, 779, 869
AjnI	CCWGG	5 cut(s)	63, 239, 295, 517, 709
AluBI	AGCT	4 cut(s)	52, 202, 346, 692
AluI	AGCT	4 cut(s)	52, 202, 346, 692
Alw21I	GWGCWC	1 cut(s)	455
AlwI	GGATC	1 cut(s)	529
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	6 cut(s)	177, 236, 332, 515, 580, 800
ApaI	GGGCCC	1 cut(s)	336
ApeKI	GCWGC	4 cut(s)	343, 482, 714, 902
ApoI	RAATTY	2 cut(s)	318, 869
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
AsiGI	ACCGGT	1 cut(s)	164
AspS9I	GGNCC	3 cut(s)	237, 332, 333
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	76, 587
BaeGI	GKGCMC	1 cut(s)	336
BaeI	ACNNNNGTAYC	2 cut(s)	805, 838
BanII	GRGCYC	2 cut(s)	264, 336
BbsI	GAAGAC	2 cut(s)	164, 903
Bbv12I	GWGCWC	1 cut(s)	455
BbvI	GCAGC	4 cut(s)	355, 494, 726, 889
BceAI	ACGGC	2 cut(s)	154, 787
BcgI	CGANNNNNNTGC	2 cut(s)	833, 867
BciT130I	CCWGG	5 cut(s)	65, 241, 297, 519, 711
BcnI	CCSGG	1 cut(s)	330
BfaI	CTAG	2 cut(s)	314, 849
BfmI	CTRYAG	2 cut(s)	444, 480
BfuAI	ACCTGC	1 cut(s)	451
BisI	GCNGC	4 cut(s)	344, 483, 715, 903
BlsI	GCNGC	4 cut(s)	345, 484, 716, 904
Bme1390I	CCNGG	6 cut(s)	65, 241, 297, 330, 519, 711
BmgT120I	GGNCC	3 cut(s)	237, 332, 333
BmiI	GGNNCC	2 cut(s)	333, 334
BmrFI	CCNGG	6 cut(s)	65, 241, 297, 330, 519, 711
BmsI	GCATC	3 cut(s)	67, 364, 537
BpiI	GAAGAC	2 cut(s)	164, 903
BpmI	CTGGAG	1 cut(s)	176
BpuEI	CTTGAG	2 cut(s)	338, 530
BpuMI	CCSGG	1 cut(s)	330
Bsa29I	ATCGAT	1 cut(s)	825
BsaAI	YACGTR	1 cut(s)	821
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	4 cut(s)	64, 239, 329, 583
BsaWI	WCCGGW	2 cut(s)	164, 883
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 70, 96, 245
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	548
BseBI	CCWGG	5 cut(s)	65, 241, 297, 519, 711
BseCI	ATCGAT	1 cut(s)	825
BseDI	CCNNGG	4 cut(s)	64, 239, 329, 583
BseGI	GGATG	2 cut(s)	379, 528
BseLI	CCNNNNNNNGG	4 cut(s)	40, 70, 96, 245
BseNI	ACTGG	1 cut(s)	548
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	4 cut(s)	355, 494, 726, 889
BshFI	GGCC	6 cut(s)	179, 238, 334, 517, 582, 802
BshTI	ACCGGT	1 cut(s)	164
BshVI	ATCGAT	1 cut(s)	825
BsiHKAI	GWGCWC	1 cut(s)	455
BsiSI	CCGG	3 cut(s)	165, 329, 884
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	4 cut(s)	40, 70, 96, 245
BsmFI	GGGAC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	309
BsnI	GGCC	6 cut(s)	179, 238, 334, 517, 582, 802
Bsp120I	GGGCCC	1 cut(s)	332
Bsp1286I	GDGCHC	3 cut(s)	264, 336, 455
Bsp143I	GATC	7 cut(s)	37, 393, 505, 521, 534, 625, 649
Bsp19I	CCATGG	1 cut(s)	583
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	6 cut(s)	179, 238, 334, 517, 582, 802
BspDI	ATCGAT	1 cut(s)	825
BspLI	GGNNCC	2 cut(s)	333, 334
BspMAI	CTGCAG	2 cut(s)	448, 484
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	1 cut(s)	529
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	548
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	4 cut(s)	64, 239, 329, 583
BssMI	GATC	7 cut(s)	37, 393, 505, 521, 534, 625, 649
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	583
Bst2UI	CCWGG	5 cut(s)	65, 241, 297, 519, 711
Bst4CI	ACNGT	3 cut(s)	91, 418, 472
BstACI	GRCGYC	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	821
BstC8I	GCNNGC	3 cut(s)	50, 107, 379
BstDSI	CCRYGG	1 cut(s)	583
BstF5I	GGATG	2 cut(s)	379, 528
BstKTI	GATC	7 cut(s)	40, 396, 508, 524, 537, 628, 652
BstMBI	GATC	7 cut(s)	37, 393, 505, 521, 534, 625, 649
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 102, 235, 340
BstNI	CCWGG	5 cut(s)	65, 241, 297, 519, 711
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	6 cut(s)	63, 239, 295, 328, 517, 709
BstSFI	CTRYAG	2 cut(s)	444, 480
BstSLI	GKGCMC	1 cut(s)	336
BstV1I	GCAGC	4 cut(s)	355, 494, 726, 889
BstV2I	GAAGAC	2 cut(s)	164, 903
Bsu15I	ATCGAT	1 cut(s)	825
BsuRI	GGCC	6 cut(s)	179, 238, 334, 517, 582, 802
BsuTUI	ATCGAT	1 cut(s)	825
BtgI	CCRYGG	1 cut(s)	583
BtsCI	GGATG	2 cut(s)	379, 528
BtsIMutI	CAGTG	2 cut(s)	468, 798
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	3 cut(s)	50, 107, 379
CaiI	CAGNNNCTG	1 cut(s)	296
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	3 cut(s)	237, 332, 333
ClaI	ATCGAT	1 cut(s)	825
CseI	GACGC	3 cut(s)	122, 130, 908
Csp6I	GTAC	1 cut(s)	670
CspAI	ACCGGT	1 cut(s)	164
CviAII	CATG	3 cut(s)	121, 340, 584
CviQI	GTAC	1 cut(s)	670
DpnI	GATC	7 cut(s)	39, 395, 507, 523, 536, 627, 651
DpnII	GATC	7 cut(s)	37, 393, 505, 521, 534, 625, 649
Eco130I	CCWWGG	1 cut(s)	583
Eco24I	GRGCYC	2 cut(s)	264, 336
Eco32I	GATATC	2 cut(s)	326, 839
Eco57I	CTGAAG	2 cut(s)	158, 553
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	869
EcoRII	CCWGG	5 cut(s)	63, 239, 295, 517, 709
EcoRV	GATATC	2 cut(s)	326, 839
EcoT14I	CCWWGG	1 cut(s)	583
EcoT38I	GRGCYC	2 cut(s)	264, 336
ErhI	CCWWGG	1 cut(s)	583
FaeI	CATG	3 cut(s)	124, 343, 587
FaiI	YATR	8 cut(s)	71, 122, 216, 341, 387, 585, 615, 864
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	3 cut(s)	120, 339, 583
Fnu4HI	GCNGC	4 cut(s)	344, 483, 715, 903
FokI	GGATG	2 cut(s)	386, 515
FriOI	GRGCYC	2 cut(s)	264, 336
Fsp4HI	GCNGC	4 cut(s)	344, 483, 715, 903
FspBI	CTAG	2 cut(s)	314, 849
GluI	GCNGC	4 cut(s)	344, 483, 715, 903
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	6 cut(s)	179, 238, 334, 517, 582, 802
HapII	CCGG	3 cut(s)	165, 329, 884
HgaI	GACGC	3 cut(s)	122, 130, 908
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	3 cut(s)	124, 343, 587
HincII	GTYRAC	1 cut(s)	747
HindII	GTYRAC	1 cut(s)	747
HinfI	GANTC	4 cut(s)	249, 365, 405, 827
HpaII	CCGG	3 cut(s)	165, 329, 884
HphI	GGTGA	2 cut(s)	76, 587
Hpy166II	GTNNAC	2 cut(s)	747, 807
Hpy188I	TCNGA	2 cut(s)	133, 572
Hpy188III	TCNNGA	4 cut(s)	314, 397, 509, 532
Hpy8I	GTNNAC	2 cut(s)	747, 807
Hpy99I	CGWCG	4 cut(s)	16, 19, 22, 146
HpyAV	CCTTC	4 cut(s)	484, 572, 577, 695
HpyCH4III	ACNGT	3 cut(s)	91, 418, 472
HpyCH4IV	ACGT	2 cut(s)	60, 820
HpyCH4V	TGCA	8 cut(s)	343, 381, 389, 446, 482, 595, 638, 905
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 102, 235, 340
HpySE526I	ACGT	2 cut(s)	60, 820
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	3 cut(s)	124, 343, 587
Kzo9I	GATC	7 cut(s)	37, 393, 505, 521, 534, 625, 649
LmnI	GCTCC	1 cut(s)	450
Lsp1109I	GCAGC	4 cut(s)	355, 494, 726, 889
LweI	GCATC	3 cut(s)	67, 364, 537
MaeI	CTAG	2 cut(s)	314, 849
MaeII	ACGT	2 cut(s)	60, 820
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	7 cut(s)	39, 395, 507, 523, 536, 627, 651
MboI	GATC	7 cut(s)	37, 393, 505, 521, 534, 625, 649
MboII	GAAGA	5 cut(s)	38, 164, 341, 902, 908
MfeI	CAATTG	1 cut(s)	498
MhlI	GDGCHC	3 cut(s)	264, 336, 455
MluCI	AATT	8 cut(s)	125, 150, 318, 433, 498, 720, 855, 869
MlyI	GAGTC	1 cut(s)	258
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	7 cut(s)	92, 151, 564, 566, 728, 752, 880
MseI	TTAA	3 cut(s)	149, 474, 723
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	3 cut(s)	165, 329, 884
MspR9I	CCNGG	6 cut(s)	65, 241, 297, 330, 519, 711
MunI	CAATTG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	309
MvaI	CCWGG	5 cut(s)	65, 241, 297, 519, 711
MwoI	GCNNNNNNNGC	4 cut(s)	29, 102, 235, 340
NciI	CCSGG	1 cut(s)	330
NcoI	CCATGG	1 cut(s)	583
NdeII	GATC	7 cut(s)	37, 393, 505, 521, 534, 625, 649
NlaIII	CATG	3 cut(s)	124, 343, 587
NlaIV	GGNNCC	2 cut(s)	333, 334
NspI	RCATGY	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	365, 405, 827
PflFI	GACNNNGTC	2 cut(s)	59, 116
PflMI	CCANNNNNTGG	1 cut(s)	70
PfoI	TCCNGGA	1 cut(s)	295
PinAI	ACCGGT	1 cut(s)	164
PkrI	GCNGC	4 cut(s)	345, 484, 716, 904
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	821
Psp6I	CCWGG	5 cut(s)	63, 239, 295, 517, 709
PspGI	CCWGG	5 cut(s)	63, 239, 295, 517, 709
PspN4I	GGNNCC	2 cut(s)	333, 334
PspOMI	GGGCCC	1 cut(s)	332
PspPI	GGNCC	3 cut(s)	237, 332, 333
PstI	CTGCAG	2 cut(s)	448, 484
PstNI	CAGNNNCTG	1 cut(s)	296
PsyI	GACNNNGTC	2 cut(s)	59, 116
RsaI	GTAC	1 cut(s)	671
RsaNI	GTAC	1 cut(s)	670
SaqAI	TTAA	3 cut(s)	149, 474, 723
SatI	GCNGC	4 cut(s)	344, 483, 715, 903
Sau3AI	GATC	7 cut(s)	37, 393, 505, 521, 534, 625, 649
Sau96I	GGNCC	3 cut(s)	237, 332, 333
SbfI	CCTGCAGG	1 cut(s)	448
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	6 cut(s)	65, 241, 297, 330, 519, 711
SdaI	CCTGCAGG	1 cut(s)	448
SduI	GDGCHC	3 cut(s)	264, 336, 455
SfaNI	GCATC	3 cut(s)	67, 364, 537
SfcI	CTRYAG	2 cut(s)	444, 480
SmlI	CTYRAG	2 cut(s)	353, 509
SmoI	CTYRAG	2 cut(s)	353, 509
Sse8387I	CCTGCAGG	1 cut(s)	448
Sse9I	AATT	8 cut(s)	125, 150, 318, 433, 498, 720, 855, 869
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	2 cut(s)	314, 849
StyD4I	CCNGG	6 cut(s)	63, 239, 295, 328, 517, 709
StyI	CCWWGG	1 cut(s)	583
TaaI	ACNGT	3 cut(s)	91, 418, 472
TaiI	ACGT	2 cut(s)	63, 823
TaqI	TCGA	7 cut(s)	54, 75, 156, 322, 688, 825, 853
TasI	AATT	8 cut(s)	125, 150, 318, 433, 498, 720, 855, 869
TatI	WGTACW	1 cut(s)	669
TfiI	GAWTC	3 cut(s)	365, 405, 827
Tru1I	TTAA	3 cut(s)	149, 474, 723
Tru9I	TTAA	3 cut(s)	149, 474, 723
TscAI	CASTG	2 cut(s)	475, 798
TseI	GCWGC	4 cut(s)	343, 482, 714, 902
TspDTI	ATGAA	4 cut(s)	17, 231, 632, 909
TspRI	CASTG	2 cut(s)	475, 798
Tth111I	GACNNNGTC	2 cut(s)	59, 116
Van91I	CCANNNNNTGG	1 cut(s)	70
XapI	RAATTY	2 cut(s)	318, 869
XbaI	TCTAGA	1 cut(s)	313
XceI	RCATGY	1 cut(s)	343
XspI	CTAG	2 cut(s)	314, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.