Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0017180

Physical Location & Seq

Genomic Coordinates Forward (+)

9686379 .. 9686909

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0124100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGATTGAAAGCTTTGAGCTTGTCGCTGTTCCTAATTCTATCTTGGAGTTATTAAATATGGGGTTGGCTGGTCGTAGCCCTCAATTATGTGAGCTTTGGGTTGCATACTTTTGTTCTACTCTATGGTTCATTTGGCACTCACGTAATAAAGCTAGATATGAGGGTATAGAGCCTAATGTTTCTAGGGTTCAAAGGTTGATCGTTGGGTGTGTTAATGGCTCTAGTTGTTTGGCATCTGGGCCCATGAATAACATGATTCAAGATCTTAGGGTTGTCAAGCGCTTTGGAGCTTCATGTAGGCCAAGACGTGTTCCTCGCATTACTGAGGTTCACTGGAATTCCCCGCCATATGGTTGGATTAAAATAAATACAGATGGGGCTTGGAAGAGTACATCCAATGAAGCTGGTTATGGTGGTGTCTTTCGAGATCACAGGGGAATTGTCATAGGTGCATTCTGTTCTAACCTTGACATTCCAAGTTCGCTAGATGCGGAGGTCGTGGCAGTTATCAAAGCAATTGATTTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0008408 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010564 GO:0010639 GO:0010948 GO:0016787 GO:0016788 GO:0022402 GO:0022414 GO:0030896 GO:0031570 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033313 GO:0033554 GO:0034641 GO:0040020 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045786 GO:0045835 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051321 GO:0051445 GO:0051447 GO:0051598 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1903046 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04111 ko04113 ko04218 map04111 map04113 map04218

Pfam Domains

Protein Families

Rad1

Protein Analysis

176

Amino Acids

19.54

Weight (kDa)

8.59

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	123 - 176	7e-07	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17760
fragaria_vesca	FvH4_5g22650
malus_domestica	MD11G1183600.v1.1
prunus_persica	Prupe.4G270400_v2.0.a1 Prupe.4G270400_v2.0.a1
pyrus_communis	pycom12561g00220
rosa_chinensis	RchiOBHm_Chr7g0211071
rosa_laevigata	RLG00000003024
rosa_multiflora	Rmu_sc0012670.1_g000005
rosa_roxburghii	Rroxscaffold_3G00248130
rosa_rugosa	Rorug07G0124100
rosa_samantha	Rh7AG256700
rosa_wichuraiana	Rw7G021890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	344, 491
AcsI	RAATTY	1 cut(s)	337
AfaI	GTAC	1 cut(s)	391
AfeI	AGCGCT	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	3 cut(s)	8, 191, 260
AjiI	CACGTC	1 cut(s)	308
AluBI	AGCT	7 cut(s)	12, 19, 94, 152, 290, 404, 527
AluI	AGCT	7 cut(s)	12, 19, 94, 152, 290, 404, 527
Aor51HI	AGCGCT	1 cut(s)	281
AoxI	GGCC	2 cut(s)	239, 299
ApaI	GGGCCC	1 cut(s)	243
ApoI	RAATTY	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	239, 240
BaeGI	GKGCMC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	243
BccI	CCATC	1 cut(s)	368
BfaI	CTAG	4 cut(s)	153, 183, 222, 485
BfoI	RGCGCY	1 cut(s)	283
BglII	AGATCT	1 cut(s)	262
BmgBI	CACGTC	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	239, 240
BmiI	GGNNCC	1 cut(s)	241
BmsI	GCATC	2 cut(s)	242, 478
BsaAI	YACGTR	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	392
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	338
BseSI	GKGCMC	1 cut(s)	243
BshFI	GGCC	2 cut(s)	241, 301
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	2 cut(s)	241, 301
Bsp120I	GGGCCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	3 cut(s)	198, 262, 427
BspACI	CCGC	2 cut(s)	344, 491
BspANI	GGCC	2 cut(s)	241, 301
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	338
BssMI	GATC	3 cut(s)	198, 262, 427
Bst6I	CTCTTC	1 cut(s)	380
BstBAI	YACGTR	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	266, 324
BstF5I	GGATG	1 cut(s)	392
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	3 cut(s)	201, 265, 430
BstMBI	GATC	3 cut(s)	198, 262, 427
BstSLI	GKGCMC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	241, 301
BtrI	CACGTC	1 cut(s)	308
BtsCI	GGATG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	331
CfoI	GCGC	1 cut(s)	282
Cfr13I	GGNCC	2 cut(s)	239, 240
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	3 cut(s)	244, 253, 294
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	2 cut(s)	266, 324
DpnI	GATC	3 cut(s)	200, 264, 429
DpnII	GATC	3 cut(s)	198, 262, 427
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
Eco24I	GRGCYC	1 cut(s)	243
Eco47III	AGCGCT	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	243
FaeI	CATG	3 cut(s)	247, 256, 297
FatI	CATG	3 cut(s)	243, 252, 293
FauI	CCCGC	1 cut(s)	351
FauNDI	CATATG	1 cut(s)	349
FokI	GGATG	1 cut(s)	379
FriOI	GRGCYC	1 cut(s)	243
FspBI	CTAG	4 cut(s)	153, 183, 222, 485
GlaI	GCGC	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	283
HaeIII	GGCC	2 cut(s)	241, 301
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	3 cut(s)	247, 256, 297
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	10
HinfI	GANTC	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188III	TCNNGA	2 cut(s)	260, 425
Hpy8I	GTNNAC	1 cut(s)	331
HpyCH4IV	ACGT	2 cut(s)	142, 307
HpyCH4V	TGCA	2 cut(s)	104, 452
HpyF3I	CTNAG	2 cut(s)	266, 324
HpySE526I	ACGT	2 cut(s)	142, 307
Hsp92II	CATG	3 cut(s)	247, 256, 297
HspAI	GCGC	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	198, 262, 427
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	5 cut(s)	54, 222, 319, 390, 418
LweI	GCATC	2 cut(s)	242, 478
MaeI	CTAG	4 cut(s)	153, 183, 222, 485
MaeII	ACGT	2 cut(s)	142, 307
MalI	GATC	3 cut(s)	200, 264, 429
MboI	GATC	3 cut(s)	198, 262, 427
MboII	GAAGA	1 cut(s)	397
MfeI	CAATTG	1 cut(s)	516
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	5 cut(s)	34, 83, 337, 438, 516
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	5 cut(s)	90, 154, 319, 324, 487
MseI	TTAA	4 cut(s)	53, 213, 360, 529
MunI	CAATTG	1 cut(s)	516
Mva1269I	GAATGC	1 cut(s)	452
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	3 cut(s)	198, 262, 427
NlaIII	CATG	3 cut(s)	247, 256, 297
NlaIV	GGNNCC	1 cut(s)	241
PctI	GAATGC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	256
Ppu21I	YACGTR	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	241
PspOMI	GGGCCC	1 cut(s)	239
PspPI	GGNCC	2 cut(s)	239, 240
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SaqAI	TTAA	4 cut(s)	53, 213, 360, 529
Sau3AI	GATC	3 cut(s)	198, 262, 427
Sau96I	GGNCC	2 cut(s)	239, 240
SduI	GDGCHC	1 cut(s)	243
SfaNI	GCATC	2 cut(s)	242, 478
Sse9I	AATT	5 cut(s)	34, 83, 337, 438, 516
SsiI	CCGC	2 cut(s)	344, 491
SspMI	CTAG	4 cut(s)	153, 183, 222, 485
TaiI	ACGT	2 cut(s)	145, 310
TaqI	TCGA	1 cut(s)	424
TasI	AATT	5 cut(s)	34, 83, 337, 438, 516
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	4 cut(s)	53, 213, 360, 529
Tru9I	TTAA	4 cut(s)	53, 213, 360, 529
TscAI	CASTG	1 cut(s)	338
TspDTI	ATGAA	4 cut(s)	118, 260, 282, 414
TspRI	CASTG	1 cut(s)	338
XapI	RAATTY	1 cut(s)	337
XspI	CTAG	4 cut(s)	153, 183, 222, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.