Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0017180

Physical Location & Seq

Genomic Coordinates Reverse (-)

24041819 .. 24044336

Gene Structure 2518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1183600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAATTCGTCGTCGCTGGCAGAGGAGGCCCCTGATCTGGTGTGCCAGATCGACAACGCCCAGGGCATGGTCGACGCCCTCACCACCGTCCGATGGAAACGCCAGCAGGACGCGGTGGTGGAATTATCAGAGCACGGCGTCGTTTTAATTGTGGAGGAAACCGGTTGTCTTCAGGCCAAAGTTTATTTGCAGCGTGAGCTGTTTACTCGTTACGAATACAACGGGCAAGGCCGCCCCCGGTTTGGAATCAGTTTGGGGCTCTTCGTCGATTGCTTGAACACATTTTCAGTTCCTGGACAATCAACCATTCTCGAAATTCGCTATCCCGGCCCTGACATGCAGCTTCTTCTCAAGTCTGTTGATTCGTTGGATGCTTGCATTTATGCAGAGATCAGGACAAGAATCCCAGATACAGTTTCATGGGACTACAATTTTGAACCCGCAGGGAGCACCCCGCTCACCTTTACTGTTAAGTCTGCGGCGCTGAAGGAAGCAATCGATGATCTTGAGTGGCCTGGATCAAGCATCCAGATCAGTTTACAACCAGTTCCTTCAACTGTTACATTCAGAGGTGAAGGCCACGGAGATTTGCAGATAGACTTGATGTACTATGTGAACACCGATCTTTTGGTTGCATTTCATTGTGATCGTCAAGTATCTTACAGGTATAAATACAAGTTTCTTCGAGCAACTACTTCAAACATACCTAGCAGCGTCATTAAAGACAACAGAGGAAGCAAGTTGACTATTGGGAGAGGGGGATTGCTGAAAGTTCAACACCTAGTTTCAGTGGCAAGACCATCCACTTCACACCCTCGGATTGATTCTGCTGGGTATCAGCAACCCAGTCGAATTGCTTATATCGAGTTCTTTGTCAAACCAGAGGAGGATGAAGACACTGCCAATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0008408 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010564 GO:0010639 GO:0010948 GO:0016787 GO:0016788 GO:0022402 GO:0022414 GO:0030896 GO:0031570 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033313 GO:0033554 GO:0034641 GO:0040020 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045786 GO:0045835 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051321 GO:0051445 GO:0051447 GO:0051598 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1903046 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04111 ko04113 ko04218 map04111 map04113 map04218

Pfam Domains

Protein Families

Rad1

Protein Analysis

304

Amino Acids

33.82

Weight (kDa)

5.13

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad1	PF02144	15 - 235	5.8e-23	Repair protein Rad1/Rec1/Rad17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17760
fragaria_vesca	FvH4_5g22650
malus_domestica	MD11G1183600.v1.1
prunus_persica	Prupe.4G270400_v2.0.a1 Prupe.4G270400_v2.0.a1
pyrus_communis	pycom12561g00220
rosa_chinensis	RchiOBHm_Chr7g0211071
rosa_laevigata	RLG00000003024
rosa_multiflora	Rmu_sc0012670.1_g000005
rosa_roxburghii	Rroxscaffold_3G00248130
rosa_rugosa	Rorug07G0124100
rosa_samantha	Rh7AG256700
rosa_wichuraiana	Rw7G021890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	67
AccBSI	CCGCTC	1 cut(s)	457
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	113
AciI	CCGC	5 cut(s)	113, 232, 441, 455, 479
AclWI	GGATC	1 cut(s)	526
AcsI	RAATTY	2 cut(s)	4, 315
AcuI	CTGAAG	2 cut(s)	155, 506
AcyI	GRCGYC	2 cut(s)	75, 138
AfaI	GTAC	1 cut(s)	608
AfiI	CCNNNNNNNGG	4 cut(s)	37, 67, 93, 242
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	5 cut(s)	277, 437, 555, 699, 776
AjnI	CCWGG	3 cut(s)	60, 292, 514
AluBI	AGCT	2 cut(s)	199, 343
AluI	AGCT	2 cut(s)	199, 343
Alw21I	GWGCWC	2 cut(s)	135, 452
AlwI	GGATC	1 cut(s)	526
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	6 cut(s)	27, 174, 229, 328, 512, 577
ApeKI	GCWGC	3 cut(s)	190, 340, 711
ApoI	RAATTY	2 cut(s)	4, 315
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AsiGI	ACCGGT	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	484
AspS9I	GGNCC	2 cut(s)	28, 329
AsuC2I	CCSGG	2 cut(s)	238, 327
AsuHPI	GGTGA	3 cut(s)	73, 451, 584
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	2 cut(s)	161, 900
Bbv12I	GWGCWC	2 cut(s)	135, 452
BbvI	GCAGC	3 cut(s)	202, 352, 723
BccI	CCATC	2 cut(s)	87, 808
BceAI	ACGGC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	830, 864
BciT130I	CCWGG	3 cut(s)	62, 294, 516
BcnI	CCSGG	2 cut(s)	238, 327
BfaI	CTAG	2 cut(s)	708, 782
BfoI	RGCGCY	1 cut(s)	485
BisI	GCNGC	5 cut(s)	191, 232, 341, 480, 712
BlsI	GCNGC	5 cut(s)	192, 233, 342, 481, 713
Bme1390I	CCNGG	5 cut(s)	62, 238, 294, 327, 516
BmgT120I	GGNCC	2 cut(s)	28, 329
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	5 cut(s)	62, 238, 294, 327, 516
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	2 cut(s)	361, 534
BmuI	ACTGGG	1 cut(s)	840
BpiI	GAAGAC	2 cut(s)	161, 900
BpuEI	CTTGAG	2 cut(s)	335, 527
BpuMI	CCSGG	2 cut(s)	238, 327
Bsa29I	ATCGAT	1 cut(s)	498
BsaHI	GRCGYC	2 cut(s)	75, 138
BsaJI	CCNNGG	5 cut(s)	60, 61, 236, 580, 815
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 67, 93, 242
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	545, 846
BseBI	CCWGG	3 cut(s)	62, 294, 516
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	5 cut(s)	60, 61, 236, 580, 815
BseGI	GGATG	4 cut(s)	376, 525, 800, 895
BseLI	CCNNNNNNNGG	4 cut(s)	37, 67, 93, 242
BseNI	ACTGG	2 cut(s)	545, 846
BseRI	GAGGAG	2 cut(s)	38, 899
BseXI	GCAGC	3 cut(s)	202, 352, 723
BseYI	CCCAGC	1 cut(s)	830
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	6 cut(s)	29, 176, 231, 330, 514, 579
BshTI	ACCGGT	1 cut(s)	161
BshVI	ATCGAT	1 cut(s)	498
BsiHKAI	GWGCWC	2 cut(s)	135, 452
BsiSI	CCGG	3 cut(s)	162, 238, 327
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	4 cut(s)	37, 67, 93, 242
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	6 cut(s)	29, 176, 231, 330, 514, 579
Bsp1286I	GDGCHC	3 cut(s)	135, 261, 452
Bsp143I	GATC	8 cut(s)	34, 48, 390, 502, 518, 531, 622, 646
BspACI	CCGC	5 cut(s)	113, 232, 441, 455, 479
BspANI	GGCC	6 cut(s)	29, 176, 231, 330, 514, 579
BspDI	ATCGAT	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	526
BspQI	GCTCTTC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	457
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	2 cut(s)	545, 846
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	5 cut(s)	60, 61, 236, 580, 815
BssMI	GATC	8 cut(s)	34, 48, 390, 502, 518, 531, 622, 646
BssNI	GRCGYC	2 cut(s)	75, 138
Bst2UI	CCWGG	3 cut(s)	62, 294, 516
Bst4CI	ACNGT	4 cut(s)	88, 415, 469, 559
Bst6I	CTCTTC	1 cut(s)	266
BstACI	GRCGYC	2 cut(s)	75, 138
BstC8I	GCNNGC	3 cut(s)	18, 104, 376
BstDSI	CCRYGG	1 cut(s)	580
BstF5I	GGATG	4 cut(s)	376, 525, 800, 895
BstFNI	CGCG	1 cut(s)	113
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	8 cut(s)	37, 51, 393, 505, 521, 534, 625, 649
BstMBI	GATC	8 cut(s)	34, 48, 390, 502, 518, 531, 622, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 196, 327
BstNI	CCWGG	3 cut(s)	62, 294, 516
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	5 cut(s)	60, 236, 292, 325, 514
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	202, 352, 723
BstV2I	GAAGAC	2 cut(s)	161, 900
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	6 cut(s)	29, 176, 231, 330, 514, 579
BsuTUI	ATCGAT	1 cut(s)	498
BtgI	CCRYGG	1 cut(s)	580
BtsCI	GGATG	4 cut(s)	376, 525, 800, 895
BtsI	GCAGTG	1 cut(s)	897
BtsIMutI	CAGTG	2 cut(s)	795, 897
Cac8I	GCNNGC	3 cut(s)	18, 104, 376
CaiI	CAGNNNCTG	1 cut(s)	293
CfoI	GCGC	1 cut(s)	484
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	28, 329
ClaI	ATCGAT	1 cut(s)	498
CseI	GACGC	4 cut(s)	83, 119, 127, 703
Csp6I	GTAC	1 cut(s)	607
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	3 cut(s)	67, 337, 420
CviJI	RGCY	9 cut(s)	29, 176, 199, 231, 259, 330, 343, 514, 579
CviKI_1	RGCY	9 cut(s)	29, 176, 199, 231, 259, 330, 343, 514, 579
CviQI	GTAC	1 cut(s)	607
DpnI	GATC	8 cut(s)	36, 50, 392, 504, 520, 533, 624, 648
DpnII	GATC	8 cut(s)	34, 48, 390, 502, 518, 531, 622, 646
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	261
Eco57I	CTGAAG	2 cut(s)	155, 506
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	3 cut(s)	60, 292, 514
EcoT38I	GRGCYC	1 cut(s)	261
FaeI	CATG	3 cut(s)	70, 340, 423
FaiI	YATR	8 cut(s)	68, 338, 384, 421, 612, 669, 704, 861
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	3 cut(s)	66, 336, 419
FauI	CCCGC	2 cut(s)	448, 462
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	5 cut(s)	191, 232, 341, 480, 712
FokI	GGATG	4 cut(s)	383, 512, 787, 902
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	5 cut(s)	191, 232, 341, 480, 712
FspBI	CTAG	2 cut(s)	708, 782
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	5 cut(s)	191, 232, 341, 480, 712
GsaI	CCCAGC	1 cut(s)	834
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	6 cut(s)	29, 176, 231, 330, 514, 579
HapII	CCGG	3 cut(s)	162, 238, 327
HgaI	GACGC	4 cut(s)	83, 119, 127, 703
HhaI	GCGC	1 cut(s)	484
Hin1I	GRCGYC	2 cut(s)	75, 138
Hin1II	CATG	3 cut(s)	70, 340, 423
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HincII	GTYRAC	2 cut(s)	73, 744
HindII	GTYRAC	2 cut(s)	73, 744
HinfI	GANTC	4 cut(s)	246, 362, 402, 824
HpaII	CCGG	3 cut(s)	162, 238, 327
HphI	GGTGA	3 cut(s)	73, 451, 584
Hpy166II	GTNNAC	5 cut(s)	73, 204, 539, 616, 744
Hpy188I	TCNGA	4 cut(s)	92, 130, 569, 819
Hpy188III	TCNNGA	4 cut(s)	311, 394, 506, 529
Hpy8I	GTNNAC	5 cut(s)	73, 204, 539, 616, 744
Hpy99I	CGWCG	5 cut(s)	13, 16, 77, 143, 269
HpyAV	CCTTC	3 cut(s)	481, 561, 569
HpyCH4III	ACNGT	4 cut(s)	88, 415, 469, 559
HpyCH4V	TGCA	6 cut(s)	190, 340, 378, 386, 592, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 196, 327
Hsp92I	GRCGYC	2 cut(s)	75, 138
Hsp92II	CATG	3 cut(s)	70, 340, 423
HspAI	GCGC	1 cut(s)	482
Kzo9I	GATC	8 cut(s)	34, 48, 390, 502, 518, 531, 622, 646
LguI	GCTCTTC	1 cut(s)	266
LmnI	GCTCC	1 cut(s)	447
Lsp1109I	GCAGC	3 cut(s)	202, 352, 723
LweI	GCATC	2 cut(s)	361, 534
MaeI	CTAG	2 cut(s)	708, 782
MaeIII	GTNAC	2 cut(s)	209, 559
MalI	GATC	8 cut(s)	36, 50, 392, 504, 520, 533, 624, 648
MbiI	CCGCTC	1 cut(s)	457
MboI	GATC	8 cut(s)	34, 48, 390, 502, 518, 531, 622, 646
MboII	GAAGA	5 cut(s)	161, 253, 338, 674, 905
MhlI	GDGCHC	3 cut(s)	135, 261, 452
MluCI	AATT	6 cut(s)	4, 122, 147, 315, 430, 852
MmeI	TCCRAC	1 cut(s)	348
MseI	TTAA	3 cut(s)	146, 471, 720
MspI	CCGG	3 cut(s)	162, 238, 327
MspR9I	CCNGG	5 cut(s)	62, 238, 294, 327, 516
MvaI	CCWGG	3 cut(s)	62, 294, 516
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	3 cut(s)	26, 196, 327
NciI	CCSGG	2 cut(s)	238, 327
NdeII	GATC	8 cut(s)	34, 48, 390, 502, 518, 531, 622, 646
NlaIII	CATG	3 cut(s)	70, 340, 423
NlaIV	GGNNCC	1 cut(s)	30
NspI	RCATGY	1 cut(s)	340
PasI	CCCWGGG	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	266
PfeI	GAWTC	4 cut(s)	246, 362, 402, 824
PflMI	CCANNNNNTGG	1 cut(s)	67
PfoI	TCCNGGA	1 cut(s)	292
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	5 cut(s)	192, 233, 342, 481, 713
Psp6I	CCWGG	3 cut(s)	60, 292, 514
PspFI	CCCAGC	1 cut(s)	830
PspGI	CCWGG	3 cut(s)	60, 292, 514
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	28, 329
PstNI	CAGNNNCTG	1 cut(s)	293
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
SalI	GTCGAC	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	266
SaqAI	TTAA	3 cut(s)	146, 471, 720
SatI	GCNGC	5 cut(s)	191, 232, 341, 480, 712
Sau3AI	GATC	8 cut(s)	34, 48, 390, 502, 518, 531, 622, 646
Sau96I	GGNCC	2 cut(s)	28, 329
ScrFI	CCNGG	5 cut(s)	62, 238, 294, 327, 516
SduI	GDGCHC	3 cut(s)	135, 261, 452
SetI	ASST	7 cut(s)	201, 345, 464, 574, 668, 709, 783
SfaNI	GCATC	2 cut(s)	361, 534
SmlI	CTYRAG	2 cut(s)	350, 506
SmoI	CTYRAG	2 cut(s)	350, 506
Sse9I	AATT	6 cut(s)	4, 122, 147, 315, 430, 852
SsiI	CCGC	5 cut(s)	113, 232, 441, 455, 479
SspMI	CTAG	2 cut(s)	708, 782
StyD4I	CCNGG	5 cut(s)	60, 236, 292, 325, 514
TaaI	ACNGT	4 cut(s)	88, 415, 469, 559
TaqI	TCGA	8 cut(s)	51, 72, 267, 312, 498, 685, 850, 864
TasI	AATT	6 cut(s)	4, 122, 147, 315, 430, 852
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	2 cut(s)	234, 482
TfiI	GAWTC	4 cut(s)	246, 362, 402, 824
Tru1I	TTAA	3 cut(s)	146, 471, 720
Tru9I	TTAA	3 cut(s)	146, 471, 720
TscAI	CASTG	2 cut(s)	795, 904
TseI	GCWGC	3 cut(s)	190, 340, 711
TspDTI	ATGAA	4 cut(s)	17, 408, 629, 906
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	2 cut(s)	795, 904
Van91I	CCANNNNNTGG	1 cut(s)	67
XapI	RAATTY	2 cut(s)	4, 315
XceI	RCATGY	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	2 cut(s)	708, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.