Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0017180

Physical Location & Seq

Genomic Coordinates Forward (+)

43274071 .. 43276596

Gene Structure 2526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003024

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAACGCGTCGCCGTCGGAATCAGAGGCCGAGGAAGGCCCCGATCTGGTGTGCCAGCTCGACAACGTCCAGGGCATGGTCGACGCCTTCACCACCGTCCGATGGAAGCGCCATCAGGACGCCGTCGTGGAGCTATCGGAGCACGGCGTCGTTTTGATTGTCGAGGAAACCGGTTGTCTTCAGGCCAAAGTGTATCTGCAGCGCGAGCTTTTTGTTCGGTACGAATTCAAAGGGCATGGGCGGCCCAGGTTTGGAGTGAGTTTGGGCCTCTTTGTGGATTGCTTGAACACATTTTCAGTTCCTGGAAAATCAAGTGTAATTGAGATTCAATATCCCGGTCCTGATATGCAGCTTCTTGTCAAGTCTGTTGATTCATTGGAATCTTGCATTTATGCCGAGATCAGGACAAGAATCCCAGATACAGTTTCGTGGGACTACAATTTTGAACCTGCAGGGAGCACCCCGATCTCTTTTACTGTTAAGTCTGCAGCACTGAAAGAAGCGATTGATGATCTTGAATGGCCTGGATCAAGCATCCAGATCAGCCTACAACCACATCCTCCTACTGTTACCTTTAGAGGTGAAGGCCATGGAGATTTACAGATAGACTTTACATACTATGTCAATACTGATCTCTTGGTTGCATTTCAATGTGATCGTCAAGTAGCTTACAGGTATAAATACAAGTTCCTTCGAGCAACAACTTCAAACATCCCCAGCACTGTCATTAAAGATAACAGAGGAAGCAAGTTGACTATTGGGAGAGGCGGATTGCTGAAAGTACAGCACTTAGTTTCAGTGGCAAGACCAACTACTTCACACCCGCGCATAGACTCTGCCGGATATCAACAACCAAGTCGAATTGCCTATATTGAATTCTTCGTGAAACCGGAGGAAGATGAAGCCACAATACATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0008408 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010564 GO:0010639 GO:0010948 GO:0016787 GO:0016788 GO:0022402 GO:0022414 GO:0030896 GO:0031570 GO:0031974 GO:0031981 GO:0032991 GO:0033043 GO:0033313 GO:0033554 GO:0034641 GO:0040020 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045786 GO:0045835 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051321 GO:0051445 GO:0051447 GO:0051598 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1903046 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04111 ko04113 ko04218 map04111 map04113 map04218

Pfam Domains

Protein Families

Rad1

Protein Analysis

307

Amino Acids

34.27

Weight (kDa)

5.33

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad1	PF02144	17 - 236	6.1e-23	Repair protein Rad1/Rec1/Rad17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17760
fragaria_vesca	FvH4_5g22650
malus_domestica	MD11G1183600.v1.1
prunus_persica	Prupe.4G270400_v2.0.a1 Prupe.4G270400_v2.0.a1
pyrus_communis	pycom12561g00220
rosa_chinensis	RchiOBHm_Chr7g0211071
rosa_laevigata	RLG00000003024
rosa_multiflora	Rmu_sc0012670.1_g000005
rosa_roxburghii	Rroxscaffold_3G00248130
rosa_rugosa	Rorug07G0124100
rosa_samantha	Rh7AG256700
rosa_wichuraiana	Rw7G021890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	457
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	3 cut(s)	8, 204, 826
AciI	CCGC	3 cut(s)	241, 768, 824
AclWI	GGATC	1 cut(s)	535
AcsI	RAATTY	2 cut(s)	224, 875
AcuI	CTGAAG	1 cut(s)	164
AcyI	GRCGYC	3 cut(s)	84, 120, 147
AfaI	GTAC	2 cut(s)	221, 783
AfiI	CCNNNNNNNGG	6 cut(s)	46, 76, 102, 251, 274, 402
AflIII	ACRYGT	1 cut(s)	6
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	8 cut(s)	229, 286, 329, 446, 518, 650, 708, 875
AjnI	CCWGG	4 cut(s)	69, 245, 301, 523
AluBI	AGCT	5 cut(s)	58, 133, 208, 352, 668
AluI	AGCT	5 cut(s)	58, 133, 208, 352, 668
Alw21I	GWGCWC	2 cut(s)	144, 461
AlwI	GGATC	1 cut(s)	535
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	7 cut(s)	27, 37, 183, 242, 265, 521, 586
ApeKI	GCWGC	3 cut(s)	199, 349, 488
ApoI	RAATTY	2 cut(s)	224, 875
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
AsiGI	ACCGGT	1 cut(s)	170
AspLEI	GCGC	3 cut(s)	111, 204, 828
AspS9I	GGNCC	4 cut(s)	38, 243, 265, 338
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	2 cut(s)	82, 593
AvaII	GGWCC	1 cut(s)	338
BarI	GAAGNNNNNNTAC	1 cut(s)	894
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	2 cut(s)	144, 461
BbvI	GCAGC	3 cut(s)	211, 361, 500
BccI	CCATC	2 cut(s)	96, 120
BceAI	ACGGC	2 cut(s)	107, 160
BciT130I	CCWGG	4 cut(s)	71, 247, 303, 525
BcnI	CCSGG	1 cut(s)	336
BfmI	CTRYAG	3 cut(s)	197, 450, 486
BfoI	RGCGCY	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	457
BisI	GCNGC	4 cut(s)	200, 242, 350, 489
BlsI	GCNGC	4 cut(s)	201, 243, 351, 490
Bme1390I	CCNGG	5 cut(s)	71, 247, 303, 336, 525
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	4 cut(s)	38, 243, 265, 338
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	5 cut(s)	71, 247, 303, 336, 525
BmsI	GCATC	1 cut(s)	543
BpiI	GAAGAC	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	336
BsaHI	GRCGYC	3 cut(s)	84, 120, 147
BsaJI	CCNNGG	4 cut(s)	30, 70, 245, 589
BsaWI	WCCGGW	2 cut(s)	170, 889
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 76, 102, 251, 274, 402
Bse118I	RCCGGY	1 cut(s)	170
BseBI	CCWGG	4 cut(s)	71, 247, 303, 525
BseDI	CCNNGG	4 cut(s)	30, 70, 245, 589
BseGI	GGATG	3 cut(s)	534, 556, 711
BseLI	CCNNNNNNNGG	6 cut(s)	46, 76, 102, 251, 274, 402
BseXI	GCAGC	3 cut(s)	211, 361, 500
BseYI	CCCAGC	1 cut(s)	716
Bsh1236I	CGCG	3 cut(s)	8, 204, 826
BshFI	GGCC	7 cut(s)	29, 39, 185, 244, 267, 523, 588
BshTI	ACCGGT	1 cut(s)	170
BsiHKAI	GWGCWC	2 cut(s)	144, 461
BsiSI	CCGG	4 cut(s)	171, 336, 840, 890
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	6 cut(s)	46, 76, 102, 251, 274, 402
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	7 cut(s)	29, 39, 185, 244, 267, 523, 588
Bsp1286I	GDGCHC	2 cut(s)	144, 461
Bsp143I	GATC	8 cut(s)	43, 399, 465, 511, 527, 540, 631, 655
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	3 cut(s)	241, 768, 824
BspANI	GGCC	7 cut(s)	29, 39, 185, 244, 267, 523, 588
BspFNI	CGCG	3 cut(s)	8, 204, 826
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	3 cut(s)	201, 454, 490
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	1 cut(s)	535
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	4 cut(s)	30, 70, 245, 589
BssMI	GATC	8 cut(s)	43, 399, 465, 511, 527, 540, 631, 655
BssNI	GRCGYC	3 cut(s)	84, 120, 147
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	4 cut(s)	71, 247, 303, 525
Bst4CI	ACNGT	5 cut(s)	97, 424, 478, 568, 724
BstACI	GRCGYC	3 cut(s)	84, 120, 147
BstC8I	GCNNGC	2 cut(s)	56, 206
BstDEI	CTNAG	1 cut(s)	790
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	3 cut(s)	534, 556, 711
BstFNI	CGCG	3 cut(s)	8, 204, 826
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	3 cut(s)	111, 204, 828
BstKTI	GATC	8 cut(s)	46, 402, 468, 514, 530, 543, 634, 658
BstMBI	GATC	8 cut(s)	43, 399, 465, 511, 527, 540, 631, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 205, 241
BstNI	CCWGG	4 cut(s)	71, 247, 303, 525
BstSCI	CCNGG	5 cut(s)	69, 245, 301, 334, 523
BstSFI	CTRYAG	3 cut(s)	197, 450, 486
BstUI	CGCG	3 cut(s)	8, 204, 826
BstV1I	GCAGC	3 cut(s)	211, 361, 500
BstV2I	GAAGAC	1 cut(s)	170
BsuRI	GGCC	7 cut(s)	29, 39, 185, 244, 267, 523, 588
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	3 cut(s)	534, 556, 711
BtsIMutI	CAGTG	3 cut(s)	491, 720, 804
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	2 cut(s)	56, 206
CaiI	CAGNNNCTG	1 cut(s)	302
CfoI	GCGC	3 cut(s)	111, 204, 828
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	4 cut(s)	38, 243, 265, 338
CseI	GACGC	3 cut(s)	92, 128, 136
Csp6I	GTAC	2 cut(s)	220, 782
CspAI	ACCGGT	1 cut(s)	170
CviAII	CATG	4 cut(s)	76, 236, 590, 914
CviQI	GTAC	2 cut(s)	220, 782
DdeI	CTNAG	1 cut(s)	790
DpnI	GATC	8 cut(s)	45, 401, 467, 513, 529, 542, 633, 657
DpnII	GATC	8 cut(s)	43, 399, 465, 511, 527, 540, 631, 655
EciI	GGCGGA	1 cut(s)	783
Eco130I	CCWWGG	1 cut(s)	589
Eco32I	GATATC	1 cut(s)	845
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	38
EcoRI	GAATTC	2 cut(s)	224, 875
EcoRII	CCWGG	4 cut(s)	69, 245, 301, 523
EcoRV	GATATC	1 cut(s)	845
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	4 cut(s)	79, 239, 593, 917
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	4 cut(s)	75, 235, 589, 913
FauI	CCCGC	1 cut(s)	831
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	4 cut(s)	200, 242, 350, 489
FokI	GGATG	3 cut(s)	521, 543, 698
Fsp4HI	GCNGC	4 cut(s)	200, 242, 350, 489
GlaI	GCGC	3 cut(s)	110, 203, 827
GluI	GCNGC	4 cut(s)	200, 242, 350, 489
GsaI	CCCAGC	1 cut(s)	720
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	7 cut(s)	29, 39, 185, 244, 267, 523, 588
HapII	CCGG	4 cut(s)	171, 336, 840, 890
HgaI	GACGC	3 cut(s)	92, 128, 136
HhaI	GCGC	3 cut(s)	111, 204, 828
Hin1I	GRCGYC	3 cut(s)	84, 120, 147
Hin1II	CATG	4 cut(s)	79, 239, 593, 917
Hin6I	GCGC	3 cut(s)	109, 202, 826
HinP1I	GCGC	3 cut(s)	109, 202, 826
HincII	GTYRAC	2 cut(s)	82, 753
HindII	GTYRAC	2 cut(s)	82, 753
HinfI	GANTC	6 cut(s)	20, 325, 371, 380, 411, 833
HpaII	CCGG	4 cut(s)	171, 336, 840, 890
HphI	GGTGA	2 cut(s)	82, 593
Hpy166II	GTNNAC	2 cut(s)	82, 753
Hpy188I	TCNGA	4 cut(s)	19, 25, 101, 139
Hpy188III	TCNNGA	6 cut(s)	116, 341, 403, 515, 538, 883
Hpy8I	GTNNAC	2 cut(s)	82, 753
Hpy99I	CGWCG	5 cut(s)	13, 19, 86, 128, 152
HpyAV	CCTTC	4 cut(s)	29, 97, 578, 701
HpyCH4III	ACNGT	5 cut(s)	97, 424, 478, 568, 724
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	6 cut(s)	199, 349, 387, 452, 488, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 205, 241
HpyF3I	CTNAG	1 cut(s)	790
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	3 cut(s)	84, 120, 147
Hsp92II	CATG	4 cut(s)	79, 239, 593, 917
HspAI	GCGC	3 cut(s)	109, 202, 826
Kzo9I	GATC	8 cut(s)	43, 399, 465, 511, 527, 540, 631, 655
LmnI	GCTCC	3 cut(s)	130, 139, 456
Lsp1109I	GCAGC	3 cut(s)	211, 361, 500
LweI	GCATC	1 cut(s)	543
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	8 cut(s)	45, 401, 467, 513, 529, 542, 633, 657
MboI	GATC	8 cut(s)	43, 399, 465, 511, 527, 540, 631, 655
MboII	GAAGA	3 cut(s)	170, 871, 908
MhlI	GDGCHC	2 cut(s)	144, 461
MluCI	AATT	5 cut(s)	224, 318, 439, 861, 875
MluI	ACGCGT	1 cut(s)	6
MlyI	GAGTC	1 cut(s)	827
MnlI	CCTC	9 cut(s)	19, 25, 157, 278, 570, 572, 734, 758, 886
MseI	TTAA	2 cut(s)	480, 729
MslI	CAYNNNNRTG	1 cut(s)	649
MspI	CCGG	4 cut(s)	171, 336, 840, 890
MspR9I	CCNGG	5 cut(s)	71, 247, 303, 336, 525
MvaI	CCWGG	4 cut(s)	71, 247, 303, 525
MvnI	CGCG	3 cut(s)	8, 204, 826
MwoI	GCNNNNNNNGC	3 cut(s)	139, 205, 241
NciI	CCSGG	1 cut(s)	336
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	8 cut(s)	43, 399, 465, 511, 527, 540, 631, 655
NlaIII	CATG	4 cut(s)	79, 239, 593, 917
NlaIV	GGNNCC	1 cut(s)	40
NmeAIII	GCCGAG	2 cut(s)	55, 421
PfeI	GAWTC	5 cut(s)	20, 325, 371, 380, 411
PflFI	GACNNNGTC	2 cut(s)	65, 122
PflMI	CCANNNNNTGG	1 cut(s)	76
PfoI	TCCNGGA	1 cut(s)	301
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	4 cut(s)	201, 243, 351, 490
PleI	GAGTC	1 cut(s)	827
PpsI	GAGTC	1 cut(s)	827
Psp6I	CCWGG	4 cut(s)	69, 245, 301, 523
PspFI	CCCAGC	1 cut(s)	716
PspGI	CCWGG	4 cut(s)	69, 245, 301, 523
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	4 cut(s)	38, 243, 265, 338
PstI	CTGCAG	3 cut(s)	201, 454, 490
PstNI	CAGNNNCTG	1 cut(s)	302
PsyI	GACNNNGTC	2 cut(s)	65, 122
RsaI	GTAC	2 cut(s)	221, 783
RsaNI	GTAC	2 cut(s)	220, 782
RseI	CAYNNNNRTG	1 cut(s)	649
SalI	GTCGAC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	480, 729
SatI	GCNGC	4 cut(s)	200, 242, 350, 489
Sau3AI	GATC	8 cut(s)	43, 399, 465, 511, 527, 540, 631, 655
Sau96I	GGNCC	4 cut(s)	38, 243, 265, 338
SbfI	CCTGCAGG	1 cut(s)	454
SchI	GAGTC	1 cut(s)	827
ScrFI	CCNGG	5 cut(s)	71, 247, 303, 336, 525
SdaI	CCTGCAGG	1 cut(s)	454
SduI	GDGCHC	2 cut(s)	144, 461
SfaNI	GCATC	1 cut(s)	543
SfcI	CTRYAG	3 cut(s)	197, 450, 486
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	649
Sse8387I	CCTGCAGG	1 cut(s)	454
Sse9I	AATT	5 cut(s)	224, 318, 439, 861, 875
SsiI	CCGC	3 cut(s)	241, 768, 824
StyD4I	CCNGG	5 cut(s)	69, 245, 301, 334, 523
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	5 cut(s)	97, 424, 478, 568, 724
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	5 cut(s)	60, 81, 162, 694, 859
TasI	AATT	5 cut(s)	224, 318, 439, 861, 875
TatI	WGTACW	1 cut(s)	781
TauI	GCSGC	1 cut(s)	244
TfiI	GAWTC	5 cut(s)	20, 325, 371, 380, 411
Tru1I	TTAA	2 cut(s)	480, 729
Tru9I	TTAA	2 cut(s)	480, 729
TscAI	CASTG	3 cut(s)	498, 727, 804
TseI	GCWGC	3 cut(s)	199, 349, 488
TspDTI	ATGAA	3 cut(s)	17, 363, 915
TspRI	CASTG	3 cut(s)	498, 727, 804
Tth111I	GACNNNGTC	2 cut(s)	65, 122
Van91I	CCANNNNNTGG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	2 cut(s)	224, 875
XmiI	GTMKAC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.