AT4G17790

SNARE associated Golgi protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014316
Physical Location & Seq
Forward (+)
9891051 .. 9893057
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17790.1

Sequence Viewer

Length: 795 bp
ATGGAGAAAGAAGAAGGAGAAACAACAACAACGATCGGCGTTGTTCCGGCGGCGCCGGCGAAATTACCGACTCCGATATATTCTCTGAGCTTTTGGGAGGTCACGGCAGCTTCCGGCGTCGTTTTAGGGTTTATTTTGGGTCTTGTTTGCGTTTATCTCACAATGCCTCAATCTGATTACAGCTTTCTCAAGCTACCTCGTAATCTCGAAGATCTTCAGATTCTTAGAGATAATCTTGAGATATACACAAGTGATTACACAGTTCAAGTTCTTGTTGGATATTGTCTGGTGTACGTTTTTATGCAGACGTTCATGATTCCTGGAACTGTGTTCATGTCTTTGCTTGCTGGTGCTCTCTTTGGAGTTGTCAAAGGAATGGCTCTTGTTGTCTCCACTGCAACAGCTGGTGCTTCCTCTTGTTATTTCCTCTCTAAGCTCATTGGTAGACCTTTACTCTTCTCGCTTTGGCCTGACAAGCTCGTATTCTTCCAAGATCAGGTTGCGAGAAGAAAAGATCGGTTGCTGAATTATATGCTGTTCTTGAGGCTAACACCAACATTGCCTAACACTTTCATTAATGTTGCTTCTCCAATTGTTGATGTTCCTTATCATATCTTCTTCCTAGCTACATTCATCGGTCTGATTCCTGCTGCATTTGTCACTGTCCGGGCTGGGCTTGCTCTTGGAGAGCTAAAATCATTGGGAGATCTCTATGACTTCAGCTCCATGGCGACTCTGTGTCTCATTGGTGTGCTCTCTGTGACTCCAACCCTAATTGGCAAGAAACAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

264

Amino Acids

28.93

Weight (kDa)

6.57

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 106 - 225 1.6e-17 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17790
fragaria_vesca FvH4_5g22470
malus_domestica MD06G1037100.v1.1 MD16G1272300.v1.1
prunus_persica Prupe.5G032200_v2.0.a1
pyrus_communis pycom16g24130
rosa_chinensis RchiOBHm_Chr7g0210261
rosa_laevigata RLG00000003054
rosa_multiflora Rmu_sc0017046.1_g000008
rosa_roxburghii Rroxscaffold_3G00248510
rosa_rugosa Rorug07G0120100
rosa_samantha Rh7AG253000 Rh7BG248100 Rh7CG270000 Rh7DG260600
rosa_wichuraiana Rw7G021520 Rw7G021570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 52
AccI GTMKAC 1 cut(s) 445
AciI CCGC 1 cut(s) 50
AcuI CTGAAG 2 cut(s) 200, 703
AcyI GRCGYC 2 cut(s) 53, 117
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 496
AgsI TTSAA 1 cut(s) 266
AhdI GACNNNNNGTC 1 cut(s) 738
AjnI CCWGG 1 cut(s) 319
Alw21I GWGCWC 2 cut(s) 355, 756
Alw26I GTCTC 2 cut(s) 394, 746
AoxI GGCC 1 cut(s) 467
ApeKI GCWGC 2 cut(s) 107, 650
AseI ATTAAT 1 cut(s) 576
Asp700I GAANNNNTTC 1 cut(s) 213
AspLEI GCGC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 668
BanI GGYRCC 1 cut(s) 52
Bbv12I GWGCWC 2 cut(s) 355, 756
BbvI GCAGC 2 cut(s) 119, 637
BceAI ACGGC 1 cut(s) 120
BciT130I CCWGG 1 cut(s) 321
BcnI CCSGG 1 cut(s) 668
BcoDI GTCTC 2 cut(s) 394, 746
BfaI CTAG 1 cut(s) 623
BfoI RGCGCY 1 cut(s) 56
BglII AGATCT 2 cut(s) 211, 706
BisI GCNGC 3 cut(s) 51, 108, 651
BlsI GCNGC 3 cut(s) 52, 109, 652
Bme1390I CCNGG 2 cut(s) 321, 668
BmeRI GACNNNNNGTC 1 cut(s) 738
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 2 cut(s) 321, 668
BpuEI CTTGAG 3 cut(s) 173, 257, 562
BpuMI CCSGG 1 cut(s) 668
BsaHI GRCGYC 2 cut(s) 53, 117
BsaJI CCNNGG 1 cut(s) 726
BsaXI ACNNNNNCTCC 2 cut(s) 707, 737
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse118I RCCGGY 1 cut(s) 55
Bse3DI GCAATG 1 cut(s) 557
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 726
BseLI CCNNNNNNNGG 1 cut(s) 496
BseMI GCAATG 1 cut(s) 557
BseMII CTCAG 1 cut(s) 77
BseXI GCAGC 2 cut(s) 119, 637
BseYI CCCAGC 1 cut(s) 671
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 469
BshNI GGYRCC 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 2 cut(s) 355, 756
BsiSI CCGG 4 cut(s) 47, 56, 114, 667
BslI CCNNNNNNNGG 1 cut(s) 496
BsmAI GTCTC 2 cut(s) 394, 746
BsnI GGCC 1 cut(s) 469
Bsp1286I GDGCHC 2 cut(s) 355, 756
Bsp143I GATC 5 cut(s) 33, 211, 493, 514, 706
Bsp19I CCATGG 1 cut(s) 726
BspACI CCGC 1 cut(s) 50
BspANI GGCC 1 cut(s) 469
BspCNI CTCAG 1 cut(s) 78
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 726
BssMI GATC 5 cut(s) 33, 211, 493, 514, 706
BssNI GRCGYC 2 cut(s) 53, 117
BssT1I CCWWGG 1 cut(s) 726
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 3 cut(s) 262, 328, 664
Bst6I CTCTTC 1 cut(s) 461
BstACI GRCGYC 2 cut(s) 53, 117
BstC8I GCNNGC 3 cut(s) 57, 345, 678
BstDEI CTNAG 3 cut(s) 86, 224, 432
BstDSI CCRYGG 1 cut(s) 726
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 5 cut(s) 36, 214, 496, 517, 709
BstMAI GTCTC 2 cut(s) 394, 746
BstMBI GATC 5 cut(s) 33, 211, 493, 514, 706
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 3 cut(s) 56, 475, 677
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 2 cut(s) 319, 666
BstV1I GCAGC 2 cut(s) 119, 637
BstX2I RGATCY 2 cut(s) 211, 706
BstYI RGATCY 2 cut(s) 211, 706
BsuRI GGCC 1 cut(s) 469
BtgI CCRYGG 1 cut(s) 726
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 2 cut(s) 393, 660
Cac8I GCNNGC 3 cut(s) 57, 345, 678
CciI TCATGA 1 cut(s) 312
CfoI GCGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 55
CseI GACGC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 292
CviAII CATG 3 cut(s) 313, 334, 727
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 3 cut(s) 86, 224, 432
DinI GGCGCC 1 cut(s) 54
DpnI GATC 5 cut(s) 35, 213, 495, 516, 708
DpnII GATC 5 cut(s) 33, 211, 493, 514, 706
DriI GACNNNNNGTC 1 cut(s) 738
Eam1104I CTCTTC 1 cut(s) 461
Eam1105I GACNNNNNGTC 1 cut(s) 738
EarI CTCTTC 1 cut(s) 461
Eco130I CCWWGG 1 cut(s) 726
Eco57I CTGAAG 2 cut(s) 200, 703
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 726
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 726
FaeI CATG 3 cut(s) 316, 337, 730
FatI CATG 3 cut(s) 312, 333, 726
FblI GTMKAC 1 cut(s) 445
Fnu4HI GCNGC 3 cut(s) 51, 108, 651
Fsp4HI GCNGC 3 cut(s) 51, 108, 651
FspBI CTAG 1 cut(s) 623
GlaI GCGC 1 cut(s) 54
GluI GCNGC 3 cut(s) 51, 108, 651
GsaI CCCAGC 1 cut(s) 675
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 1 cut(s) 469
HapII CCGG 4 cut(s) 47, 56, 114, 667
HgaI GACGC 1 cut(s) 106
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 2 cut(s) 53, 117
Hin1II CATG 3 cut(s) 316, 337, 730
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 6 cut(s) 70, 220, 316, 643, 733, 763
HpaII CCGG 4 cut(s) 47, 56, 114, 667
Hpy166II GTNNAC 2 cut(s) 292, 446
Hpy188I TCNGA 5 cut(s) 75, 87, 175, 219, 642
Hpy188III TCNNGA 4 cut(s) 206, 236, 313, 541
Hpy8I GTNNAC 2 cut(s) 292, 446
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 8
HpyCH4III ACNGT 3 cut(s) 262, 328, 664
HpyCH4IV ACGT 2 cut(s) 294, 308
HpyCH4V TGCA 3 cut(s) 304, 398, 653
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 475, 677
HpyF3I CTNAG 3 cut(s) 86, 224, 432
HpySE526I ACGT 2 cut(s) 294, 308
Hsp92I GRCGYC 2 cut(s) 53, 117
Hsp92II CATG 3 cut(s) 316, 337, 730
HspAI GCGC 1 cut(s) 53
KasI GGCGCC 1 cut(s) 52
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Kzo9I GATC 5 cut(s) 33, 211, 493, 514, 706
LmnI GCTCC 1 cut(s) 728
Lsp1109I GCAGC 2 cut(s) 119, 637
MaeI CTAG 1 cut(s) 623
MaeII ACGT 2 cut(s) 294, 308
MaeIII GTNAC 3 cut(s) 100, 658, 760
MalI GATC 5 cut(s) 35, 213, 495, 516, 708
MboI GATC 5 cut(s) 33, 211, 493, 514, 706
MboII GAAGA 8 cut(s) 23, 206, 221, 448, 478, 519, 607, 610
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 2 cut(s) 211, 706
MhlI GDGCHC 2 cut(s) 355, 756
MluCI AATT 4 cut(s) 62, 526, 591, 774
Mly113I GGCGCC 1 cut(s) 53
MlyI GAGTC 3 cut(s) 64, 727, 757
MmeI TCCRAC 2 cut(s) 256, 791
MnlI CCTC 6 cut(s) 91, 177, 207, 424, 437, 537
MreI CGCCGGCG 1 cut(s) 55
MroNI GCCGGC 1 cut(s) 55
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 1 cut(s) 576
MslI CAYNNNNRTG 1 cut(s) 749
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 4 cut(s) 47, 56, 114, 667
MspR9I CCNGG 2 cut(s) 321, 668
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 3 cut(s) 56, 475, 677
NaeI GCCGGC 1 cut(s) 57
NarI GGCGCC 1 cut(s) 53
NciI CCSGG 1 cut(s) 668
NcoI CCATGG 1 cut(s) 726
NdeII GATC 5 cut(s) 33, 211, 493, 514, 706
NgoMIV GCCGGC 1 cut(s) 55
NlaIII CATG 3 cut(s) 316, 337, 730
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 3 cut(s) 100, 658, 760
PagI TCATGA 1 cut(s) 312
PdiI GCCGGC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 3 cut(s) 220, 316, 643
PfoI TCCNGGA 1 cut(s) 319
PkrI GCNGC 3 cut(s) 52, 109, 652
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 3 cut(s) 64, 727, 757
PluTI GGCGCC 1 cut(s) 56
PpsI GAGTC 3 cut(s) 64, 727, 757
PshBI ATTAAT 1 cut(s) 576
Psp6I CCWGG 1 cut(s) 319
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 54
PsuI RGATCY 2 cut(s) 211, 706
PvuI CGATCG 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 749
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 3 cut(s) 51, 108, 651
Sau3AI GATC 5 cut(s) 33, 211, 493, 514, 706
SchI GAGTC 3 cut(s) 64, 727, 757
ScrFI CCNGG 2 cut(s) 321, 668
SduI GDGCHC 2 cut(s) 355, 756
SfoI GGCGCC 1 cut(s) 54
SgrAI CRCCGGYG 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 749
SmlI CTYRAG 3 cut(s) 188, 236, 541
SmoI CTYRAG 3 cut(s) 188, 236, 541
Sse9I AATT 4 cut(s) 62, 526, 591, 774
SsiI CCGC 1 cut(s) 50
SspDI GGCGCC 1 cut(s) 52
SspMI CTAG 1 cut(s) 623
StyD4I CCNGG 2 cut(s) 319, 666
StyI CCWWGG 1 cut(s) 726
TaaI ACNGT 3 cut(s) 262, 328, 664
TaiI ACGT 2 cut(s) 297, 311
TaqI TCGA 1 cut(s) 207
TaqII GACCGA 1 cut(s) 626
TasI AATT 4 cut(s) 62, 526, 591, 774
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 3 cut(s) 220, 316, 643
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 2 cut(s) 400, 667
TseFI GTSAC 3 cut(s) 100, 658, 760
TseI GCWGC 2 cut(s) 107, 650
Tsp45I GTSAC 3 cut(s) 100, 658, 760
TspDTI ATGAA 4 cut(s) 301, 322, 562, 622
TspRI CASTG 2 cut(s) 400, 667
VspI ATTAAT 1 cut(s) 576
XmiI GTMKAC 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.