Prupe.5G032200_v2.0.a1

membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014316
Physical Location & Seq
Forward (+)
3690180 .. 3693123
2944 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G032200.1

Sequence Viewer

Length: 780 bp
ATGGAGAAGAGAGAAGACAATGGAGATGTGAAGGTTGTTGGGGGAGTGGGATCTATCAGTAAGTTCCCATTGAGCTTCTGGGAGATGGCTGTGGCTTCCACGGTCCTATTGGGCTTCGTGGTTGGCCTTCTGGTGGTTTACCTAACCATGCCCGCATCGGATTATAGCTTTCTCAAGCTCCCTCGTAGCCTCCAAGAGCTTCAAATCCTCAGAGTTCACCTTGAGGACTACACAAGTGACTACACTGCTCAGGTTTTGTTGGGGTACTGCATGGTTTATATATTTATGCAGACTTTCATGATCCCTGGTACTGTATTCATGTCCTTGCTTGCTGGTTCCCTTTTTGGGGTTTTCAAAGGCGTAGCTTTGGTGGTGTTCAATGCCACTGCTGGTGCATCTTCTTGTTATTTTTTGTCAAAGTTGATAGGGAGGCCCATTGTCTTCTCTCTTTGGCCTGACAAGCTACAATTTTTCCAAAACCAGGTGGCTAAAAGAAGAGATGGACTTTTAAACTACATGTTGTTTCTACGATTGACTCCGACCTTGCCAAACACGTTTATTAATCTTGCTTCACCAATAGTGGATGTACCCTATCATATTTTCTTCCTGGCAACCATAATTGGTCTGATACCAGCTGCTTATGTCACTGTCAGGGCTGGATTAGCTCTTGGAGAGTTGCGATCTCTTGGGGATCTCTATGATTTCAACTCAATAGCCACCTTGTTCTTCATTGGAGTTGTCTCAGTTACTCCCACGTTAGTGAGCAAGAGCAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

260

Amino Acids

28.58

Weight (kDa)

8.8

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17790
fragaria_vesca FvH4_5g22470
malus_domestica MD06G1037100.v1.1 MD16G1272300.v1.1
prunus_persica Prupe.5G032200_v2.0.a1
pyrus_communis pycom16g24130
rosa_chinensis RchiOBHm_Chr7g0210261
rosa_laevigata RLG00000003054
rosa_multiflora Rmu_sc0017046.1_g000008
rosa_roxburghii Rroxscaffold_3G00248510
rosa_rugosa Rorug07G0120100
rosa_samantha Rh7AG253000 Rh7BG248100 Rh7CG270000 Rh7DG260600
rosa_wichuraiana Rw7G021520 Rw7G021570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 153
AclWI GGATC 3 cut(s) 58, 295, 699
AfaI GTAC 3 cut(s) 266, 310, 588
AfiI CCNNNNNNNGG 4 cut(s) 133, 345, 346, 481
AflIII ACRYGT 2 cut(s) 516, 552
AgsI TTSAA 4 cut(s) 203, 355, 379, 706
AjnI CCWGG 3 cut(s) 304, 480, 606
AleI CACNNNNGTG 1 cut(s) 758
AluBI AGCT 8 cut(s) 75, 168, 178, 199, 365, 463, 635, 665
AluI AGCT 8 cut(s) 75, 168, 178, 199, 365, 463, 635, 665
Alw26I GTCTC 1 cut(s) 745
AlwI GGATC 3 cut(s) 58, 295, 699
AoxI GGCC 3 cut(s) 124, 431, 452
ApeKI GCWGC 1 cut(s) 635
AseI ATTAAT 1 cut(s) 561
AspS9I GGNCC 2 cut(s) 103, 432
AsuHPI GGTGA 2 cut(s) 209, 564
AvaII GGWCC 1 cut(s) 103
BbsI GAAGAC 2 cut(s) 21, 433
BbvI GCAGC 1 cut(s) 622
BccI CCATC 2 cut(s) 79, 494
BciT130I CCWGG 3 cut(s) 306, 482, 608
BcoDI GTCTC 1 cut(s) 745
BisI GCNGC 1 cut(s) 636
BlsI GCNGC 1 cut(s) 637
Bme1390I CCNGG 3 cut(s) 306, 482, 608
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 103, 432
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 3 cut(s) 306, 482, 608
BmsI GCATC 2 cut(s) 164, 404
BpiI GAAGAC 2 cut(s) 21, 433
Bpu10I CCTNAGC 1 cut(s) 249
BpuEI CTTGAG 2 cut(s) 158, 242
BsaJI CCNNGG 2 cut(s) 99, 304
Bsc4I CCNNNNNNNGG 4 cut(s) 133, 345, 346, 481
BseBI CCWGG 3 cut(s) 306, 482, 608
BseDI CCNNGG 2 cut(s) 99, 304
BseGI GGATG 1 cut(s) 589
BseLI CCNNNNNNNGG 4 cut(s) 133, 345, 346, 481
BseMII CTCAG 3 cut(s) 223, 263, 756
BseXI GCAGC 1 cut(s) 622
BshFI GGCC 3 cut(s) 126, 433, 454
BslI CCNNNNNNNGG 4 cut(s) 133, 345, 346, 481
BsmAI GTCTC 1 cut(s) 745
BsnI GGCC 3 cut(s) 126, 433, 454
Bsp143I GATC 4 cut(s) 50, 300, 680, 691
BspACI CCGC 1 cut(s) 153
BspANI GGCC 3 cut(s) 126, 433, 454
BspCNI CTCAG 3 cut(s) 222, 262, 755
BspHI TCATGA 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 337
BspPI GGATC 3 cut(s) 58, 295, 699
BssECI CCNNGG 2 cut(s) 99, 304
BssMI GATC 4 cut(s) 50, 300, 680, 691
Bst2UI CCWGG 3 cut(s) 306, 482, 608
Bst4CI ACNGT 3 cut(s) 103, 313, 649
Bst6I CTCTTC 2 cut(s) 2, 490
BstC8I GCNNGC 2 cut(s) 153, 330
BstDEI CTNAG 3 cut(s) 209, 249, 742
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 589
BstKTI GATC 4 cut(s) 53, 303, 683, 694
BstMAI GTCTC 1 cut(s) 745
BstMBI GATC 4 cut(s) 50, 300, 680, 691
BstMWI GCNNNNNNNGC 2 cut(s) 460, 662
BstNI CCWGG 3 cut(s) 306, 482, 608
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 3 cut(s) 304, 480, 606
BstV1I GCAGC 1 cut(s) 622
BstV2I GAAGAC 2 cut(s) 21, 433
BstX2I RGATCY 2 cut(s) 50, 691
BstYI RGATCY 2 cut(s) 50, 691
BsuRI GGCC 3 cut(s) 126, 433, 454
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 589
BtsI GCAGTG 2 cut(s) 243, 384
BtsIMutI CAGTG 3 cut(s) 243, 384, 645
Cac8I GCNNGC 2 cut(s) 153, 330
CciI TCATGA 1 cut(s) 297
Cfr13I GGNCC 2 cut(s) 103, 432
CsiI ACCWGGT 1 cut(s) 480
Csp6I GTAC 3 cut(s) 265, 309, 587
CviAII CATG 5 cut(s) 148, 271, 298, 319, 517
CviQI GTAC 3 cut(s) 265, 309, 587
DdeI CTNAG 3 cut(s) 209, 249, 742
DpnI GATC 4 cut(s) 52, 302, 682, 693
DpnII GATC 4 cut(s) 50, 300, 680, 691
DraI TTTAAA 1 cut(s) 510
Eam1104I CTCTTC 2 cut(s) 2, 490
EarI CTCTTC 2 cut(s) 2, 490
Eco47I GGWCC 1 cut(s) 103
EcoRII CCWGG 3 cut(s) 304, 480, 606
FaeI CATG 5 cut(s) 151, 274, 301, 322, 520
FatI CATG 5 cut(s) 147, 270, 297, 318, 516
FauI CCCGC 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 636
FokI GGATG 1 cut(s) 596
Fsp4HI GCNGC 1 cut(s) 636
GluI GCNGC 1 cut(s) 636
HaeIII GGCC 3 cut(s) 126, 433, 454
Hin1II CATG 5 cut(s) 151, 274, 301, 322, 520
HinfI GANTC 1 cut(s) 535
HphI GGTGA 2 cut(s) 209, 564
Hpy166II GTNNAC 2 cut(s) 139, 217
Hpy188I TCNGA 4 cut(s) 160, 212, 540, 627
Hpy188III TCNNGA 1 cut(s) 298
Hpy8I GTNNAC 2 cut(s) 139, 217
HpyAV CCTTC 2 cut(s) 25, 137
HpyCH4III ACNGT 3 cut(s) 103, 313, 649
HpyCH4IV ACGT 2 cut(s) 554, 755
HpyCH4V TGCA 3 cut(s) 270, 289, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 460, 662
HpyF3I CTNAG 3 cut(s) 209, 249, 742
HpySE526I ACGT 2 cut(s) 554, 755
Hsp92II CATG 5 cut(s) 151, 274, 301, 322, 520
Kzo9I GATC 4 cut(s) 50, 300, 680, 691
LmnI GCTCC 1 cut(s) 183
Lsp1109I GCAGC 1 cut(s) 622
LweI GCATC 2 cut(s) 164, 404
MabI ACCWGGT 1 cut(s) 480
MaeII ACGT 2 cut(s) 554, 755
MaeIII GTNAC 3 cut(s) 236, 643, 745
MalI GATC 4 cut(s) 52, 302, 682, 693
MboI GATC 4 cut(s) 50, 300, 680, 691
MboII GAAGA 7 cut(s) 19, 26, 390, 433, 507, 595, 718
MflI RGATCY 2 cut(s) 50, 691
MluCI AATT 2 cut(s) 467, 618
MlyI GAGTC 1 cut(s) 529
MmeI TCCRAC 1 cut(s) 563
MnlI CCTC 5 cut(s) 192, 200, 217, 218, 423
MseI TTAA 2 cut(s) 509, 561
MslI CAYNNNNRTG 1 cut(s) 758
MspA1I CMGCKG 1 cut(s) 635
MspR9I CCNGG 3 cut(s) 306, 482, 608
MvaI CCWGG 3 cut(s) 306, 482, 608
MwoI GCNNNNNNNGC 2 cut(s) 460, 662
NdeII GATC 4 cut(s) 50, 300, 680, 691
NlaIII CATG 5 cut(s) 151, 274, 301, 322, 520
NlaIV GGNNCC 1 cut(s) 337
NmuCI GTSAC 2 cut(s) 236, 643
NspI RCATGY 1 cut(s) 520
OliI CACNNNNGTG 1 cut(s) 758
PagI TCATGA 1 cut(s) 297
PciI ACATGT 1 cut(s) 516
PkrI GCNGC 1 cut(s) 637
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
PscI ACATGT 1 cut(s) 516
PshBI ATTAAT 1 cut(s) 561
Psp6I CCWGG 3 cut(s) 304, 480, 606
PspGI CCWGG 3 cut(s) 304, 480, 606
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 2 cut(s) 103, 432
PsuI RGATCY 2 cut(s) 50, 691
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 3 cut(s) 266, 310, 588
RsaNI GTAC 3 cut(s) 265, 309, 587
RseI CAYNNNNRTG 1 cut(s) 758
SaqAI TTAA 2 cut(s) 509, 561
SatI GCNGC 1 cut(s) 636
Sau3AI GATC 4 cut(s) 50, 300, 680, 691
Sau96I GGNCC 2 cut(s) 103, 432
SchI GAGTC 1 cut(s) 529
ScrFI CCNGG 3 cut(s) 306, 482, 608
SexAI ACCWGGT 1 cut(s) 480
SfaNI GCATC 2 cut(s) 164, 404
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 758
SmlI CTYRAG 2 cut(s) 173, 221
SmoI CTYRAG 2 cut(s) 173, 221
Sse9I AATT 2 cut(s) 467, 618
SsiI CCGC 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 304, 480, 606
TaaI ACNGT 3 cut(s) 103, 313, 649
TaiI ACGT 2 cut(s) 557, 758
TasI AATT 2 cut(s) 467, 618
Tru1I TTAA 2 cut(s) 509, 561
Tru9I TTAA 2 cut(s) 509, 561
TscAI CASTG 3 cut(s) 250, 391, 652
TseFI GTSAC 2 cut(s) 236, 643
TseI GCWGC 1 cut(s) 635
Tsp45I GTSAC 2 cut(s) 236, 643
TspDTI ATGAA 3 cut(s) 286, 307, 718
TspRI CASTG 3 cut(s) 250, 391, 652
VpaK11BI GGWCC 1 cut(s) 103
VspI ATTAAT 1 cut(s) 561
XceI RCATGY 1 cut(s) 520
XcmI CCANNNNNNNNNTGG 2 cut(s) 75, 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.