PHD zinc finger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G17850 |
| prunus_persica | Prupe.5G038800_v2.0.a1 Prupe.5G038800_v2.0.a1 |
| rosa_roxburghii | Rroxscaffold_3G00249480 |
| rosa_samantha | Rh7AG246500 Rh7BG241600 Rh7CG262200 Rh7DG252800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 174 |
| AclWI | GGATC | 2 cut(s) | 500, 513 |
| AcsI | RAATTY | 1 cut(s) | 415 |
| AfaI | GTAC | 1 cut(s) | 483 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 234 |
| AflIII | ACRYGT | 1 cut(s) | 125 |
| AgsI | TTSAA | 2 cut(s) | 388, 427 |
| AjnI | CCWGG | 1 cut(s) | 532 |
| AluBI | AGCT | 1 cut(s) | 303 |
| AluI | AGCT | 1 cut(s) | 303 |
| Alw26I | GTCTC | 2 cut(s) | 96, 338 |
| AlwI | GGATC | 2 cut(s) | 500, 513 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 326 |
| ApeKI | GCWGC | 1 cut(s) | 16 |
| ApoI | RAATTY | 1 cut(s) | 415 |
| AspS9I | GGNCC | 1 cut(s) | 433 |
| AsuHPI | GGTGA | 4 cut(s) | 38, 143, 464, 536 |
| AvaII | GGWCC | 1 cut(s) | 433 |
| BamHI | GGATCC | 1 cut(s) | 505 |
| BbvI | GCAGC | 1 cut(s) | 28 |
| BccI | CCATC | 3 cut(s) | 17, 23, 199 |
| BciT130I | CCWGG | 1 cut(s) | 534 |
| BclI | TGATCA | 1 cut(s) | 133 |
| BcoDI | GTCTC | 2 cut(s) | 96, 338 |
| BfaI | CTAG | 3 cut(s) | 306, 449, 521 |
| BglII | AGATCT | 1 cut(s) | 493 |
| BisI | GCNGC | 1 cut(s) | 17 |
| BlsI | GCNGC | 1 cut(s) | 18 |
| Bme1390I | CCNGG | 1 cut(s) | 534 |
| Bme18I | GGWCC | 1 cut(s) | 433 |
| BmgT120I | GGNCC | 1 cut(s) | 433 |
| BmiI | GGNNCC | 3 cut(s) | 225, 435, 507 |
| BmrFI | CCNGG | 1 cut(s) | 534 |
| BmsI | GCATC | 1 cut(s) | 313 |
| BsaJI | CCNNGG | 1 cut(s) | 532 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 234 |
| BseBI | CCWGG | 1 cut(s) | 534 |
| BseDI | CCNNGG | 1 cut(s) | 532 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 234 |
| BseXI | GCAGC | 1 cut(s) | 28 |
| BsgI | GTGCAG | 3 cut(s) | 35, 204, 235 |
| BslFI | GGGAC | 1 cut(s) | 515 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 234 |
| BsmAI | GTCTC | 2 cut(s) | 96, 338 |
| BsmFI | GGGAC | 1 cut(s) | 515 |
| Bsp143I | GATC | 4 cut(s) | 133, 159, 493, 505 |
| BspACI | CCGC | 1 cut(s) | 174 |
| BspHI | TCATGA | 1 cut(s) | 555 |
| BspLI | GGNNCC | 3 cut(s) | 225, 435, 507 |
| BspPI | GGATC | 2 cut(s) | 500, 513 |
| BssECI | CCNNGG | 1 cut(s) | 532 |
| BssMI | GATC | 4 cut(s) | 133, 159, 493, 505 |
| Bst2UI | CCWGG | 1 cut(s) | 534 |
| Bst4CI | ACNGT | 2 cut(s) | 90, 115 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 56 |
| BstKTI | GATC | 4 cut(s) | 136, 162, 496, 508 |
| BstMAI | GTCTC | 2 cut(s) | 96, 338 |
| BstMBI | GATC | 4 cut(s) | 133, 159, 493, 505 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 56, 249 |
| BstNI | CCWGG | 1 cut(s) | 534 |
| BstNSI | RCATGY | 1 cut(s) | 129 |
| BstSCI | CCNGG | 1 cut(s) | 532 |
| BstV1I | GCAGC | 1 cut(s) | 28 |
| BstX2I | RGATCY | 2 cut(s) | 493, 505 |
| BstYI | RGATCY | 2 cut(s) | 493, 505 |
| CaiI | CAGNNNCTG | 1 cut(s) | 326 |
| CciI | TCATGA | 1 cut(s) | 555 |
| Cfr13I | GGNCC | 1 cut(s) | 433 |
| Csp6I | GTAC | 1 cut(s) | 482 |
| CviAII | CATG | 5 cut(s) | 20, 126, 202, 485, 556 |
| CviJI | RGCY | 2 cut(s) | 65, 303 |
| CviKI_1 | RGCY | 2 cut(s) | 65, 303 |
| CviQI | GTAC | 1 cut(s) | 482 |
| DpnI | GATC | 4 cut(s) | 135, 161, 495, 507 |
| DpnII | GATC | 4 cut(s) | 133, 159, 493, 505 |
| Eco47I | GGWCC | 1 cut(s) | 433 |
| EcoRII | CCWGG | 1 cut(s) | 532 |
| FaeI | CATG | 5 cut(s) | 23, 129, 205, 488, 559 |
| FaqI | GGGAC | 1 cut(s) | 515 |
| FatI | CATG | 5 cut(s) | 19, 125, 201, 484, 555 |
| FbaI | TGATCA | 1 cut(s) | 133 |
| Fnu4HI | GCNGC | 1 cut(s) | 17 |
| Fsp4HI | GCNGC | 1 cut(s) | 17 |
| FspBI | CTAG | 3 cut(s) | 306, 449, 521 |
| GluI | GCNGC | 1 cut(s) | 17 |
| Hin1II | CATG | 5 cut(s) | 23, 129, 205, 488, 559 |
| HphI | GGTGA | 4 cut(s) | 38, 143, 464, 536 |
| Hpy166II | GTNNAC | 1 cut(s) | 433 |
| Hpy188III | TCNNGA | 4 cut(s) | 227, 306, 343, 556 |
| Hpy8I | GTNNAC | 1 cut(s) | 433 |
| HpyCH4III | ACNGT | 2 cut(s) | 90, 115 |
| HpyCH4IV | ACGT | 1 cut(s) | 429 |
| HpyCH4V | TGCA | 7 cut(s) | 16, 50, 59, 168, 185, 201, 252 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 56, 249 |
| HpySE526I | ACGT | 1 cut(s) | 429 |
| Hsp92II | CATG | 5 cut(s) | 23, 129, 205, 488, 559 |
| Ksp22I | TGATCA | 1 cut(s) | 133 |
| Kzo9I | GATC | 4 cut(s) | 133, 159, 493, 505 |
| LpnPI | CCDG | 4 cut(s) | 313, 447, 519, 546 |
| Lsp1109I | GCAGC | 1 cut(s) | 28 |
| LweI | GCATC | 1 cut(s) | 313 |
| MaeI | CTAG | 3 cut(s) | 306, 449, 521 |
| MaeII | ACGT | 1 cut(s) | 429 |
| MaeIII | GTNAC | 1 cut(s) | 328 |
| MalI | GATC | 4 cut(s) | 135, 161, 495, 507 |
| MboI | GATC | 4 cut(s) | 133, 159, 493, 505 |
| MboII | GAAGA | 2 cut(s) | 290, 305 |
| MflI | RGATCY | 2 cut(s) | 493, 505 |
| MluCI | AATT | 4 cut(s) | 334, 374, 408, 415 |
| MnlI | CCTC | 2 cut(s) | 55, 253 |
| MseI | TTAA | 1 cut(s) | 42 |
| MslI | CAYNNNNRTG | 1 cut(s) | 24 |
| MspR9I | CCNGG | 1 cut(s) | 534 |
| MvaI | CCWGG | 1 cut(s) | 534 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 56, 249 |
| NdeII | GATC | 4 cut(s) | 133, 159, 493, 505 |
| NlaIII | CATG | 5 cut(s) | 23, 129, 205, 488, 559 |
| NlaIV | GGNNCC | 3 cut(s) | 225, 435, 507 |
| NspI | RCATGY | 1 cut(s) | 129 |
| PagI | TCATGA | 1 cut(s) | 555 |
| PciI | ACATGT | 1 cut(s) | 125 |
| PkrI | GCNGC | 1 cut(s) | 18 |
| PscI | ACATGT | 1 cut(s) | 125 |
| Psp6I | CCWGG | 1 cut(s) | 532 |
| PspGI | CCWGG | 1 cut(s) | 532 |
| PspN4I | GGNNCC | 3 cut(s) | 225, 435, 507 |
| PspPI | GGNCC | 1 cut(s) | 433 |
| PstNI | CAGNNNCTG | 1 cut(s) | 326 |
| PsuI | RGATCY | 2 cut(s) | 493, 505 |
| RsaI | GTAC | 1 cut(s) | 483 |
| RsaNI | GTAC | 1 cut(s) | 482 |
| RseI | CAYNNNNRTG | 1 cut(s) | 24 |
| SaqAI | TTAA | 1 cut(s) | 42 |
| SatI | GCNGC | 1 cut(s) | 17 |
| Sau3AI | GATC | 4 cut(s) | 133, 159, 493, 505 |
| Sau96I | GGNCC | 1 cut(s) | 433 |
| ScrFI | CCNGG | 1 cut(s) | 534 |
| SetI | ASST | 6 cut(s) | 225, 264, 305, 432, 454, 526 |
| SfaNI | GCATC | 1 cut(s) | 313 |
| SinI | GGWCC | 1 cut(s) | 433 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 24 |
| Sse9I | AATT | 4 cut(s) | 334, 374, 408, 415 |
| SsiI | CCGC | 1 cut(s) | 174 |
| SspI | AATATT | 1 cut(s) | 149 |
| SspMI | CTAG | 3 cut(s) | 306, 449, 521 |
| StyD4I | CCNGG | 1 cut(s) | 532 |
| TaaI | ACNGT | 2 cut(s) | 90, 115 |
| TaiI | ACGT | 1 cut(s) | 432 |
| TaqI | TCGA | 1 cut(s) | 342 |
| TasI | AATT | 4 cut(s) | 334, 374, 408, 415 |
| TatI | WGTACW | 1 cut(s) | 481 |
| Tru1I | TTAA | 1 cut(s) | 42 |
| Tru9I | TTAA | 1 cut(s) | 42 |
| TseI | GCWGC | 1 cut(s) | 16 |
| TspDTI | ATGAA | 4 cut(s) | 99, 159, 282, 306 |
| VpaK11BI | GGWCC | 1 cut(s) | 433 |
| XapI | RAATTY | 1 cut(s) | 415 |
| XbaI | TCTAGA | 1 cut(s) | 305 |
| XceI | RCATGY | 1 cut(s) | 129 |
| XspI | CTAG | 3 cut(s) | 306, 449, 521 |