Rh7AG246500

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0019182
Physical Location & Seq
Reverse (-)
24321700 .. 24323822
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG246500.1

Sequence Viewer

Length: 669 bp
ATGGGTAGTAAAAAATTGCTTGCTAGATGTAGCAAGTGCAGCAATGCGGCAGAACACATTTGTTGCATGCGTGTAAAATGGACAAACTTCCTGGAAGTGATTGGATGTGTGAAGAATTCATGTGTAAGGAAGAATCAGAGAAACAAGATCAAAAAGCACTCTGTTGAGCATACAATTGTCAGCAATAATGCTACTGGTGACAATGAGAAGATAAATGCTACAAGAACGATGGGTGTTGTCTTGCCAAAGAGTTACAGTAAAATTGTACCTAGTGGTCAAATTAGTTCACTTCATTTTGGATCTAGAGGTCATGATCCGGAGACTGGTGACTTAAAAACAAACAACATTTCAGAAGCTAAAGAACTTGCTAGCGAAGACTCAACGAAAGCCTTATGCGAGATACTCTTCGAACATTTTCCCCCTAGTTTGTGCAATTCCACAACTCGATTGCATATAGGTGGATTTGAAATGTGGGAAAATGGAAAACTCTCATCTTCTTGTGCTGGAATTCAATCACACTTGACAATTCTTGCTTCACCTAAATTCTCAGAAAACCATGCAACAGAAGATAATATAGCTCTTTTCTTCATTACTGAAGATCTTGAGAGCTACGAAAGACAATACAAGCCTTTTTTGGAATGCATGGTGAGGGATGATTTGGCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.73

Weight (kDa)

7.58

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 181 - 222 1.8e-07 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17850
prunus_persica Prupe.5G038800_v2.0.a1 Prupe.5G038800_v2.0.a1
rosa_roxburghii Rroxscaffold_3G00249480
rosa_samantha Rh7AG246500 Rh7BG241600 Rh7CG262200 Rh7DG252800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 316
AciI CCGC 1 cut(s) 47
AclWI GGATC 2 cut(s) 307, 308
AcsI RAATTY 3 cut(s) 115, 507, 542
AcuI CTGAAG 1 cut(s) 615
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 2 cut(s) 467, 512
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 3 cut(s) 356, 578, 609
AluI AGCT 3 cut(s) 356, 578, 609
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 2 cut(s) 307, 308
Aor13HI TCCGGA 1 cut(s) 316
ApeKI GCWGC 1 cut(s) 39
ApoI RAATTY 3 cut(s) 115, 507, 542
Asp700I GAANNNNTTC 1 cut(s) 414
AsuHPI GGTGA 4 cut(s) 209, 338, 528, 658
AsuII TTCGAA 1 cut(s) 408
AsuNHI GCTAGC 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 51
BccI CCATC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 5 cut(s) 24, 270, 303, 369, 423
BglII AGATCT 1 cut(s) 598
BisI GCNGC 2 cut(s) 40, 48
BlsI GCNGC 2 cut(s) 41, 49
Bme1390I CCNGG 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 92
BmtI GCTAGC 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 623
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse1I ACTGG 2 cut(s) 199, 328
Bse3DI GCAATG 1 cut(s) 49
BseAI TCCGGA 1 cut(s) 316
BseBI CCWGG 1 cut(s) 92
BseGI GGATG 2 cut(s) 110, 658
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 561
BseNI ACTGG 2 cut(s) 199, 328
BseXI GCAGC 1 cut(s) 51
BsgI GTGCAG 1 cut(s) 58
BsiSI CCGG 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 314
BsmI GAATGC 1 cut(s) 644
Bsp119I TTCGAA 1 cut(s) 408
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 4 cut(s) 147, 299, 313, 598
BspACI CCGC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 560
BspEI TCCGGA 1 cut(s) 316
BspHI TCATGA 1 cut(s) 310
BspOI GCTAGC 1 cut(s) 372
BspPI GGATC 2 cut(s) 307, 308
BspT104I TTCGAA 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 49
BsrI ACTGG 2 cut(s) 199, 328
BssMI GATC 4 cut(s) 147, 299, 313, 598
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 410
BstBI TTCGAA 1 cut(s) 408
BstC8I GCNNGC 3 cut(s) 21, 68, 370
BstDEI CTNAG 1 cut(s) 547
BstF5I GGATG 2 cut(s) 110, 658
BstKTI GATC 4 cut(s) 150, 302, 316, 601
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 4 cut(s) 147, 299, 313, 598
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 2 cut(s) 299, 598
BstYI RGATCY 2 cut(s) 299, 598
BtsCI GGATG 2 cut(s) 110, 658
Cac8I GCNNGC 3 cut(s) 21, 68, 370
CciI TCATGA 1 cut(s) 310
Csp6I GTAC 1 cut(s) 266
CviAII CATG 5 cut(s) 67, 120, 311, 557, 643
CviJI RGCY 6 cut(s) 356, 389, 578, 609, 628, 662
CviKI_1 RGCY 6 cut(s) 356, 389, 578, 609, 628, 662
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 1 cut(s) 547
DpnI GATC 4 cut(s) 149, 301, 315, 600
DpnII GATC 4 cut(s) 147, 299, 313, 598
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 615
EcoRI GAATTC 2 cut(s) 115, 507
EcoRII CCWGG 1 cut(s) 90
EcoT22I ATGCAT 1 cut(s) 644
FaeI CATG 5 cut(s) 70, 123, 314, 560, 646
FatI CATG 5 cut(s) 66, 119, 310, 556, 642
Fnu4HI GCNGC 2 cut(s) 40, 48
FokI GGATG 2 cut(s) 117, 665
Fsp4HI GCNGC 2 cut(s) 40, 48
FspBI CTAG 5 cut(s) 24, 270, 303, 369, 423
GluI GCNGC 2 cut(s) 40, 48
HapII CCGG 1 cut(s) 317
Hin1II CATG 5 cut(s) 70, 123, 314, 560, 646
HinfI GANTC 2 cut(s) 133, 377
HpaII CCGG 1 cut(s) 317
HphI GGTGA 4 cut(s) 209, 338, 528, 658
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 3 cut(s) 138, 352, 550
Hpy188III TCNNGA 4 cut(s) 303, 311, 317, 602
Hpy8I GTNNAC 1 cut(s) 287
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 6 cut(s) 39, 66, 432, 451, 560, 642
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 1 cut(s) 547
Hsp92II CATG 5 cut(s) 70, 123, 314, 560, 646
Kpn2I TCCGGA 1 cut(s) 316
Kzo9I GATC 4 cut(s) 147, 299, 313, 598
LpnPI CCDG 6 cut(s) 77, 104, 180, 309, 330, 489
Lsp1109I GCAGC 1 cut(s) 51
MaeI CTAG 5 cut(s) 24, 270, 303, 369, 423
MaeIII GTNAC 3 cut(s) 197, 251, 326
MalI GATC 4 cut(s) 149, 301, 315, 600
MboI GATC 4 cut(s) 147, 299, 313, 598
MboII GAAGA 9 cut(s) 124, 142, 220, 386, 397, 486, 577, 578, 608
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 2 cut(s) 299, 598
MluCI AATT 9 cut(s) 14, 115, 174, 261, 279, 433, 507, 525, 542
MlyI GAGTC 1 cut(s) 371
MnlI CCTC 2 cut(s) 299, 642
Mph1103I ATGCAT 1 cut(s) 644
MroI TCCGGA 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 414
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 456
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 644
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 39
NdeII GATC 4 cut(s) 147, 299, 313, 598
NheI GCTAGC 1 cut(s) 368
NlaIII CATG 5 cut(s) 70, 123, 314, 560, 646
NmuCI GTSAC 2 cut(s) 197, 326
NsiI ATGCAT 1 cut(s) 644
NspI RCATGY 1 cut(s) 70
NspV TTCGAA 1 cut(s) 408
PaeI GCATGC 1 cut(s) 70
PagI TCATGA 1 cut(s) 310
PctI GAATGC 1 cut(s) 644
PdmI GAANNNNTTC 1 cut(s) 414
PfeI GAWTC 1 cut(s) 133
PfoI TCCNGGA 1 cut(s) 90
PkrI GCNGC 2 cut(s) 41, 49
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PsuI RGATCY 2 cut(s) 299, 598
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 456
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 2 cut(s) 40, 48
Sau3AI GATC 4 cut(s) 147, 299, 313, 598
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 92
SetI ASST 7 cut(s) 271, 310, 358, 460, 541, 580, 611
SfuI TTCGAA 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
SphI GCATGC 1 cut(s) 70
Sse9I AATT 9 cut(s) 14, 115, 174, 261, 279, 433, 507, 525, 542
SsiI CCGC 1 cut(s) 47
SspMI CTAG 5 cut(s) 24, 270, 303, 369, 423
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 2 cut(s) 408, 445
TasI AATT 9 cut(s) 14, 115, 174, 261, 279, 433, 507, 525, 542
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TseFI GTSAC 2 cut(s) 197, 326
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 2 cut(s) 197, 326
TspDTI ATGAA 3 cut(s) 108, 281, 577
XapI RAATTY 3 cut(s) 115, 507, 542
XbaI TCTAGA 1 cut(s) 302
XceI RCATGY 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 414
XspI CTAG 5 cut(s) 24, 270, 303, 369, 423
Zsp2I ATGCAT 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.