Rh7DG252800

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019182
Physical Location & Seq
Reverse (-)
26271789 .. 26278862
7074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG252800.1

Sequence Viewer

Length: 885 bp
ATGCAACTATTGAGAGAGTTGCAGTACCAGAGAGTGATTGTCCAAGGATCTTGCTCTTTCATTGTTGTAAGTGATCAATCATATATAGATGATGTCTTCTTGTTTTCACGTCGTAAAAAATTGCTTGCTAGATGCAAGTGCAGCAATGCGGCAGAACACATTTGTTGCATGCGTGTAAAAATGGACAAACTTCCTGGAAGTGATTGGATGTGTGAAGAATTCATGTGCACTCTGTTGAGGTCAAAGTCATTTCATGTTGTACAATCAGAAGTGAAAGGCAAACAGCTTGATGAACATGGTGTGCAAAAGCATACAATTGTCAGCAATAATGCTACTGGTGACAATGAGAAGATAAATGCTACAAGAACGATGGGTGTTGTCTTGCCAAAGAGTTACAGTAAAATTGCACCTAGTGGTCAAATTAGTTCACTGTATTTTGGATCTGGAGGTCATGATCCGGAGACTGGTGACTTAAAAACAAACAACATTCCAGAAGCTAAAGAGCTTGCTAGCGAAGACTCAACGAAAGCCTTATGCGAGATACTCTTCGAACATTTTCCCCCTAGTTTGTGCAATTCCACAACTCGATTGCATATAGGTGGATTTGAAATGTGGGAAAATGGAAAACTCTCATCTTCTTGTGCTGGAATTCAAGCACACTTGACAACTCTTGCTTCACCTAAATTCTCAGAAAACCATGCAACAGAAGATAATATAGCTCTTTTCTTCTTTGCTGAAGATCTTGAGAGCTACGAAAGACAGTACAAGCCTTTTTTGGAATGCATGATAAGGGATGATTCGGCTCTTCAGGCAAAGTGTGACAATGTGGAACAGTTGTTATTCTCATCTAATCATCTTCATGAGAATTTCCAAAGTACGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

33.07

Weight (kDa)

5.68

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 228 - 292 1.3e-16 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17850
prunus_persica Prupe.5G038800_v2.0.a1 Prupe.5G038800_v2.0.a1
rosa_roxburghii Rroxscaffold_3G00249480
rosa_samantha Rh7AG246500 Rh7BG241600 Rh7CG262200 Rh7DG252800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 457
AciI CCGC 1 cut(s) 149
AclWI GGATC 3 cut(s) 55, 448, 449
AcsI RAATTY 4 cut(s) 218, 648, 683, 865
AcuI CTGAAG 2 cut(s) 756, 791
AdeI CACNNNGTG 1 cut(s) 413
AfaI GTAC 4 cut(s) 26, 261, 764, 877
AfiI CCNNNNNNNGG 2 cut(s) 464, 877
AgsI TTSAA 2 cut(s) 608, 653
AjiI CACGTC 1 cut(s) 110
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 5 cut(s) 286, 497, 505, 719, 750
AluI AGCT 5 cut(s) 286, 497, 505, 719, 750
Alw21I GWGCWC 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 455
Alw44I GTGCAC 1 cut(s) 226
AlwI GGATC 3 cut(s) 55, 448, 449
Aor13HI TCCGGA 1 cut(s) 457
ApaLI GTGCAC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 141
ApoI RAATTY 4 cut(s) 218, 648, 683, 865
Asp700I GAANNNNTTC 1 cut(s) 555
AsuHPI GGTGA 3 cut(s) 350, 479, 669
AsuII TTCGAA 1 cut(s) 549
AsuNHI GCTAGC 1 cut(s) 509
BaeGI GKGCMC 1 cut(s) 230
BbsI GAAGAC 2 cut(s) 88, 522
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 153
BccI CCATC 1 cut(s) 364
BciT130I CCWGG 1 cut(s) 195
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 4 cut(s) 129, 411, 510, 564
BglII AGATCT 1 cut(s) 739
BisI GCNGC 2 cut(s) 142, 150
BlsI GCNGC 2 cut(s) 143, 151
Bme1390I CCNGG 1 cut(s) 195
BmgBI CACGTC 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 122
BmtI GCTAGC 1 cut(s) 513
BpiI GAAGAC 2 cut(s) 88, 522
BpmI CTGGAG 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 549
BpuEI CTTGAG 1 cut(s) 764
BsaJI CCNNGG 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 457
Bsc4I CCNNNNNNNGG 2 cut(s) 464, 877
Bse1I ACTGG 2 cut(s) 340, 469
Bse3DI GCAATG 1 cut(s) 151
BseAI TCCGGA 1 cut(s) 457
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 2 cut(s) 213, 799
BseLI CCNNNNNNNGG 2 cut(s) 464, 877
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 702
BseNI ACTGG 2 cut(s) 340, 469
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 230
BsiSI CCGG 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 464, 877
BsmAI GTCTC 1 cut(s) 455
BsmI GAATGC 1 cut(s) 785
Bsp119I TTCGAA 1 cut(s) 549
Bsp1286I GDGCHC 1 cut(s) 230
Bsp13I TCCGGA 1 cut(s) 457
Bsp1407I TGTACA 1 cut(s) 259
Bsp143I GATC 5 cut(s) 47, 73, 440, 454, 739
BspACI CCGC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 701
BspEI TCCGGA 1 cut(s) 457
BspHI TCATGA 2 cut(s) 451, 859
BspOI GCTAGC 1 cut(s) 513
BspPI GGATC 3 cut(s) 55, 448, 449
BspQI GCTCTTC 1 cut(s) 810
BspT104I TTCGAA 1 cut(s) 549
BsrDI GCAATG 1 cut(s) 151
BsrGI TGTACA 1 cut(s) 259
BsrI ACTGG 2 cut(s) 340, 469
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 5 cut(s) 47, 73, 440, 454, 739
BssT1I CCWWGG 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 4 cut(s) 398, 432, 762, 834
Bst6I CTCTTC 2 cut(s) 551, 810
BstAUI TGTACA 1 cut(s) 259
BstBI TTCGAA 1 cut(s) 549
BstC8I GCNNGC 4 cut(s) 126, 170, 507, 511
BstDEI CTNAG 1 cut(s) 688
BstF5I GGATG 2 cut(s) 213, 799
BstKTI GATC 5 cut(s) 50, 76, 443, 457, 742
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 5 cut(s) 47, 73, 440, 454, 739
BstMWI GCNNNNNNNGC 2 cut(s) 141, 809
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 193
BstSLI GKGCMC 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 153
BstV2I GAAGAC 2 cut(s) 88, 522
BstX2I RGATCY 3 cut(s) 47, 440, 739
BstYI RGATCY 3 cut(s) 47, 440, 739
BtrI CACGTC 1 cut(s) 110
BtsCI GGATG 2 cut(s) 213, 799
BtsIMutI CAGTG 1 cut(s) 428
Cac8I GCNNGC 4 cut(s) 126, 170, 507, 511
CciI TCATGA 2 cut(s) 451, 859
Csp6I GTAC 4 cut(s) 25, 260, 763, 876
CviAII CATG 8 cut(s) 169, 223, 254, 296, 452, 698, 784, 860
CviJI RGCY 8 cut(s) 286, 497, 505, 530, 719, 750, 769, 803
CviKI_1 RGCY 8 cut(s) 286, 497, 505, 530, 719, 750, 769, 803
CviQI GTAC 4 cut(s) 25, 260, 763, 876
DdeI CTNAG 1 cut(s) 688
DpnI GATC 5 cut(s) 49, 75, 442, 456, 741
DpnII GATC 5 cut(s) 47, 73, 440, 454, 739
DraIII CACNNNGTG 1 cut(s) 413
Eam1104I CTCTTC 2 cut(s) 551, 810
EarI CTCTTC 2 cut(s) 551, 810
Eco130I CCWWGG 1 cut(s) 43
Eco57I CTGAAG 2 cut(s) 756, 791
EcoRI GAATTC 2 cut(s) 218, 648
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 43
EcoT22I ATGCAT 1 cut(s) 785
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 8 cut(s) 172, 226, 257, 299, 455, 701, 787, 863
FatI CATG 8 cut(s) 168, 222, 253, 295, 451, 697, 783, 859
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 142, 150
FokI GGATG 2 cut(s) 220, 806
Fsp4HI GCNGC 2 cut(s) 142, 150
FspBI CTAG 4 cut(s) 129, 411, 510, 564
GluI GCNGC 2 cut(s) 142, 150
GsuI CTGGAG 1 cut(s) 465
HapII CCGG 1 cut(s) 458
Hin1II CATG 8 cut(s) 172, 226, 257, 299, 455, 701, 787, 863
HinfI GANTC 2 cut(s) 518, 797
HpaII CCGG 1 cut(s) 458
HphI GGTGA 3 cut(s) 350, 479, 669
Hpy166II GTNNAC 2 cut(s) 228, 428
Hpy188I TCNGA 2 cut(s) 268, 691
Hpy188III TCNNGA 6 cut(s) 444, 452, 458, 491, 743, 860
Hpy8I GTNNAC 2 cut(s) 228, 428
Hpy99I CGWCG 1 cut(s) 114
HpyCH4III ACNGT 4 cut(s) 398, 432, 762, 834
HpyCH4IV ACGT 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 809
HpyF3I CTNAG 1 cut(s) 688
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 8 cut(s) 172, 226, 257, 299, 455, 701, 787, 863
Kpn2I TCCGGA 1 cut(s) 457
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 5 cut(s) 47, 73, 440, 454, 739
LguI GCTCTTC 1 cut(s) 810
Lsp1109I GCAGC 1 cut(s) 153
LweI GCATC 1 cut(s) 122
MaeI CTAG 4 cut(s) 129, 411, 510, 564
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 4 cut(s) 338, 392, 467, 818
MalI GATC 5 cut(s) 49, 75, 442, 456, 741
MboI GATC 5 cut(s) 47, 73, 440, 454, 739
MfeI CAATTG 1 cut(s) 315
MflI RGATCY 3 cut(s) 47, 440, 739
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 9 cut(s) 119, 218, 315, 402, 420, 574, 648, 683, 865
MlyI GAGTC 1 cut(s) 512
MnlI CCTC 2 cut(s) 231, 440
Mph1103I ATGCAT 1 cut(s) 785
MroI TCCGGA 1 cut(s) 457
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 1 cut(s) 473
MslI CAYNNNNRTG 2 cut(s) 597, 858
MspI CCGG 1 cut(s) 458
MspR9I CCNGG 1 cut(s) 195
MunI CAATTG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 785
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 141, 809
NdeII GATC 5 cut(s) 47, 73, 440, 454, 739
NheI GCTAGC 1 cut(s) 509
NlaIII CATG 8 cut(s) 172, 226, 257, 299, 455, 701, 787, 863
NmuCI GTSAC 3 cut(s) 338, 467, 818
NsiI ATGCAT 1 cut(s) 785
NspI RCATGY 1 cut(s) 172
NspV TTCGAA 1 cut(s) 549
PaeI GCATGC 1 cut(s) 172
PagI TCATGA 2 cut(s) 451, 859
PciSI GCTCTTC 1 cut(s) 810
PctI GAATGC 1 cut(s) 785
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 1 cut(s) 797
PfoI TCCNGGA 1 cut(s) 193
PkrI GCNGC 2 cut(s) 143, 151
PleI GAGTC 1 cut(s) 512
PpsI GAGTC 1 cut(s) 512
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PsuI RGATCY 3 cut(s) 47, 440, 739
RsaI GTAC 4 cut(s) 26, 261, 764, 877
RsaNI GTAC 4 cut(s) 25, 260, 763, 876
RseI CAYNNNNRTG 2 cut(s) 597, 858
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 2 cut(s) 142, 150
Sau3AI GATC 5 cut(s) 47, 73, 440, 454, 739
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 1 cut(s) 230
SfaNI GCATC 1 cut(s) 122
SfuI TTCGAA 1 cut(s) 549
SmiMI CAYNNNNRTG 2 cut(s) 597, 858
SmlI CTYRAG 1 cut(s) 743
SmoI CTYRAG 1 cut(s) 743
SphI GCATGC 1 cut(s) 172
Sse9I AATT 9 cut(s) 119, 218, 315, 402, 420, 574, 648, 683, 865
SsiI CCGC 1 cut(s) 149
SspMI CTAG 4 cut(s) 129, 411, 510, 564
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 4 cut(s) 398, 432, 762, 834
TaiI ACGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 549, 586
TasI AATT 9 cut(s) 119, 218, 315, 402, 420, 574, 648, 683, 865
TatI WGTACW 2 cut(s) 259, 762
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 3 cut(s) 338, 467, 818
TseI GCWGC 1 cut(s) 141
Tsp45I GTSAC 3 cut(s) 338, 467, 818
TspDTI ATGAA 5 cut(s) 49, 211, 242, 306, 848
TspRI CASTG 1 cut(s) 435
VneI GTGCAC 1 cut(s) 226
XapI RAATTY 4 cut(s) 218, 648, 683, 865
XceI RCATGY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 555
XspI CTAG 4 cut(s) 129, 411, 510, 564
Zsp2I ATGCAT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.