Rh7BG241600

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0019182
Physical Location & Seq
Reverse (-)
21304624 .. 21322128
17505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG241600.1

Sequence Viewer

Length: 933 bp
ATGGAGCAGGATTTGGTGAATATTTGTGATATTTGTGGGGATACATGTCGTAAAAAATTGCTTGCTAGATGTAGCAAGTGTAGCAATGGGGCAGAACACATTTATTGCATGCGTGTAAAAATGGACAAACTTCCTGGAAGTGATTGGATATGTGAAGAATGCATGTGTAAGGAAGAATCAGAGAAACAAGATCAAAAACATACAATTGTCAGCAATAATGCTACTGGTGACAACAAGAAGATAAATGCTGCAAGAATGATGGGTAAATCTCTATCTTTTGATGATGCCAGGTCAAACCGCTCATATGGTTCCGATACAAAAATTAAAATGCCATATCATTTCAAGGATTTGGAGAAATCAGCAGATGCAAATACAGACAACTCTTCTAAGGTGAAGTATACAACAAATGTGTCTAACCGTTCTGTTAGTTCACCAATGAATACTTCAGGTGTTGTCTTGCCAAAGAGTTACAGTAACATTGCACCTAGTGGTCAAATTAGTTCACTGCATTTTGGATCTGGAGGTCATGATCCGAAGACTGGTGACTTGAAAACAAACAACTTGTTAGAAGCTAAAGAACTTGCTCGCGAAGGCTCAACGTATTTAAAAGAAGAGCAGCAACAAGCTGTTGATGATGCGAAACAGCAAGCTGACCATTGCAAAGTAGCAGCAGTTGCTATCAGAGAAAATAATTCAAAGGTCATTGTGAATTATGAAGGAAAGCCTTATGCGAGATACTCTTCGAACATTTTAGTTTGTGCAATTCCACAGTTCGATTGCATATGGAAGTTCTACAACGCACGCAACTCAGATGGGTCGCACACAACTCCACAATCCTTGCTCCAATCTATAGAAGCCCATGACCACCCTTGCATCAATGGAGCTCCGATTGCAACATTAGGACCAAGATACATGCCAAAGTCCACAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

34.26

Weight (kDa)

8.15

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17850
prunus_persica Prupe.5G038800_v2.0.a1 Prupe.5G038800_v2.0.a1
rosa_roxburghii Rroxscaffold_3G00249480
rosa_samantha Rh7AG246500 Rh7BG241600 Rh7CG262200 Rh7DG252800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 300
AccI GTMKAC 1 cut(s) 398
AccII CGCG 1 cut(s) 588
AciI CCGC 1 cut(s) 298
AclWI GGATC 2 cut(s) 523, 524
AcuI CTGAAG 1 cut(s) 429
AdeI CACNNNGTG 1 cut(s) 488
AfiI CCNNNNNNNGG 1 cut(s) 539
AflIII ACRYGT 1 cut(s) 44
AgsI TTSAA 3 cut(s) 343, 550, 696
AjnI CCWGG 2 cut(s) 133, 287
AjuI GAANNNNNNNTTGG 2 cut(s) 427, 459
AluBI AGCT 4 cut(s) 572, 626, 650, 884
AluI AGCT 4 cut(s) 572, 626, 650, 884
Alw21I GWGCWC 1 cut(s) 886
AlwI GGATC 2 cut(s) 523, 524
ApeKI GCWGC 3 cut(s) 248, 616, 668
AspS9I GGNCC 1 cut(s) 902
AsuHPI GGTGA 5 cut(s) 28, 239, 403, 423, 554
AsuII TTCGAA 1 cut(s) 743
AvaII GGWCC 1 cut(s) 902
BanII GRGCYC 1 cut(s) 886
BbsI GAAGAC 1 cut(s) 542
Bbv12I GWGCWC 1 cut(s) 886
BbvI GCAGC 3 cut(s) 235, 628, 680
BccI CCATC 2 cut(s) 253, 806
BciT130I CCWGG 2 cut(s) 135, 289
BciVI GTATCC 1 cut(s) 34
BfaI CTAG 2 cut(s) 66, 486
BfmI CTRYAG 1 cut(s) 849
BfuI GTATCC 1 cut(s) 34
BisI GCNGC 3 cut(s) 249, 617, 669
BlsI GCNGC 3 cut(s) 250, 618, 670
Bme1390I CCNGG 2 cut(s) 135, 289
Bme18I GGWCC 1 cut(s) 902
BmgT120I GGNCC 1 cut(s) 902
BmiI GGNNCC 1 cut(s) 310
BmrFI CCNGG 2 cut(s) 135, 289
BmsI GCATC 4 cut(s) 274, 355, 625, 882
BpiI GAAGAC 1 cut(s) 542
BpmI CTGGAG 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 743
Bsc4I CCNNNNNNNGG 1 cut(s) 539
Bse1I ACTGG 2 cut(s) 229, 544
Bse3DI GCAATG 3 cut(s) 91, 477, 655
BseBI CCWGG 2 cut(s) 135, 289
BseLI CCNNNNNNNGG 1 cut(s) 539
BseMI GCAATG 3 cut(s) 91, 477, 655
BseMII CTCAG 1 cut(s) 822
BseNI ACTGG 2 cut(s) 229, 544
BseXI GCAGC 3 cut(s) 235, 628, 680
Bsh1236I CGCG 1 cut(s) 588
BsiHKAI GWGCWC 1 cut(s) 886
BslI CCNNNNNNNGG 1 cut(s) 539
BsmI GAATGC 1 cut(s) 164
Bsp119I TTCGAA 1 cut(s) 743
Bsp1286I GDGCHC 1 cut(s) 886
Bsp143I GATC 3 cut(s) 190, 515, 529
Bsp68I TCGCGA 1 cut(s) 588
BspACI CCGC 1 cut(s) 298
BspCNI CTCAG 1 cut(s) 821
BspFNI CGCG 1 cut(s) 588
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 310
BspPI GGATC 2 cut(s) 523, 524
BspQI GCTCTTC 1 cut(s) 606
BspT104I TTCGAA 1 cut(s) 743
BsrBI CCGCTC 1 cut(s) 300
BsrDI GCAATG 3 cut(s) 91, 477, 655
BsrI ACTGG 2 cut(s) 229, 544
BssMI GATC 3 cut(s) 190, 515, 529
BssNAI GTATAC 1 cut(s) 399
Bst1107I GTATAC 1 cut(s) 399
Bst2UI CCWGG 2 cut(s) 135, 289
Bst4CI ACNGT 3 cut(s) 419, 473, 771
Bst6I CTCTTC 3 cut(s) 388, 606, 745
BstAPI GCANNNNNTGC 1 cut(s) 674
BstBI TTCGAA 1 cut(s) 743
BstC8I GCNNGC 5 cut(s) 63, 110, 586, 648, 802
BstDEI CTNAG 2 cut(s) 387, 808
BstFNI CGCG 1 cut(s) 588
BstKTI GATC 3 cut(s) 193, 518, 532
BstMBI GATC 3 cut(s) 190, 515, 529
BstMWI GCNNNNNNNGC 3 cut(s) 81, 674, 890
BstNI CCWGG 2 cut(s) 135, 289
BstNSI RCATGY 4 cut(s) 48, 112, 166, 916
BstSCI CCNGG 2 cut(s) 133, 287
BstSFI CTRYAG 1 cut(s) 849
BstUI CGCG 1 cut(s) 588
BstV1I GCAGC 3 cut(s) 235, 628, 680
BstV2I GAAGAC 1 cut(s) 542
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
BstZ17I GTATAC 1 cut(s) 399
BsuI GTATCC 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 503
BtsIMutI CAGTG 1 cut(s) 503
BtuMI TCGCGA 1 cut(s) 588
Cac8I GCNNGC 5 cut(s) 63, 110, 586, 648, 802
CciI TCATGA 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 902
CspCI CAANNNNNGTGG 2 cut(s) 819, 854
CviAII CATG 6 cut(s) 45, 109, 163, 527, 860, 913
CviJI RGCY 7 cut(s) 572, 594, 626, 650, 724, 857, 884
CviKI_1 RGCY 7 cut(s) 572, 594, 626, 650, 724, 857, 884
DdeI CTNAG 2 cut(s) 387, 808
DpnI GATC 3 cut(s) 192, 517, 531
DpnII GATC 3 cut(s) 190, 515, 529
DraI TTTAAA 1 cut(s) 606
DraIII CACNNNGTG 1 cut(s) 488
Eam1104I CTCTTC 3 cut(s) 388, 606, 745
EarI CTCTTC 3 cut(s) 388, 606, 745
Ecl136II GAGCTC 1 cut(s) 884
Eco24I GRGCYC 1 cut(s) 886
Eco47I GGWCC 1 cut(s) 902
Eco53kI GAGCTC 1 cut(s) 884
Eco57I CTGAAG 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 884
EcoRII CCWGG 2 cut(s) 133, 287
EcoT22I ATGCAT 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 886
FaeI CATG 6 cut(s) 48, 112, 166, 530, 863, 916
FatI CATG 6 cut(s) 44, 108, 162, 526, 859, 912
FauNDI CATATG 2 cut(s) 304, 782
FblI GTMKAC 1 cut(s) 398
Fnu4HI GCNGC 3 cut(s) 249, 617, 669
FriOI GRGCYC 1 cut(s) 886
Fsp4HI GCNGC 3 cut(s) 249, 617, 669
FspBI CTAG 2 cut(s) 66, 486
GluI GCNGC 3 cut(s) 249, 617, 669
GsuI CTGGAG 1 cut(s) 540
Hin1II CATG 6 cut(s) 48, 112, 166, 530, 863, 916
HinfI GANTC 1 cut(s) 176
HphI GGTGA 5 cut(s) 28, 239, 403, 423, 554
Hpy166II GTNNAC 4 cut(s) 399, 431, 503, 924
Hpy188I TCNGA 6 cut(s) 181, 313, 534, 683, 811, 888
Hpy188III TCNNGA 3 cut(s) 519, 527, 587
Hpy8I GTNNAC 4 cut(s) 399, 431, 503, 924
HpyAV CCTTC 2 cut(s) 584, 710
HpyCH4III ACNGT 3 cut(s) 419, 473, 771
HpyCH4IV ACGT 1 cut(s) 599
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 674, 890
HpyF3I CTNAG 2 cut(s) 387, 808
HpySE526I ACGT 1 cut(s) 599
Hsp92II CATG 6 cut(s) 48, 112, 166, 530, 863, 916
Kzo9I GATC 3 cut(s) 190, 515, 529
LguI GCTCTTC 1 cut(s) 606
LmnI GCTCC 4 cut(s) 4, 846, 881, 889
LpnPI CCDG 8 cut(s) 120, 147, 210, 274, 301, 432, 504, 525
Lsp1109I GCAGC 3 cut(s) 235, 628, 680
LweI GCATC 4 cut(s) 274, 355, 625, 882
MaeI CTAG 2 cut(s) 66, 486
MaeII ACGT 1 cut(s) 599
MaeIII GTNAC 4 cut(s) 227, 467, 473, 542
MalI GATC 3 cut(s) 192, 517, 531
MbiI CCGCTC 1 cut(s) 300
MboI GATC 3 cut(s) 190, 515, 529
MboII GAAGA 7 cut(s) 167, 185, 250, 375, 547, 623, 732
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 1 cut(s) 886
MluCI AATT 7 cut(s) 56, 204, 321, 495, 691, 709, 762
MnlI CCTC 1 cut(s) 515
Mph1103I ATGCAT 1 cut(s) 164
MseI TTAA 2 cut(s) 324, 605
MspR9I CCNGG 2 cut(s) 135, 289
MunI CAATTG 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 2 cut(s) 135, 289
MvnI CGCG 1 cut(s) 588
MwoI GCNNNNNNNGC 3 cut(s) 81, 674, 890
NdeI CATATG 2 cut(s) 304, 782
NdeII GATC 3 cut(s) 190, 515, 529
NlaIII CATG 6 cut(s) 48, 112, 166, 530, 863, 916
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 2 cut(s) 227, 542
NruI TCGCGA 1 cut(s) 588
NsiI ATGCAT 1 cut(s) 164
NspI RCATGY 4 cut(s) 48, 112, 166, 916
NspV TTCGAA 1 cut(s) 743
PaeI GCATGC 1 cut(s) 112
PagI TCATGA 1 cut(s) 526
PciI ACATGT 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 606
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 176
PfoI TCCNGGA 1 cut(s) 133
PkrI GCNGC 3 cut(s) 250, 618, 670
PscI ACATGT 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 886
Psp6I CCWGG 2 cut(s) 133, 287
PspGI CCWGG 2 cut(s) 133, 287
PspN4I GGNNCC 1 cut(s) 310
PspPI GGNCC 1 cut(s) 902
PsuI RGATCY 1 cut(s) 515
RruI TCGCGA 1 cut(s) 588
SacI GAGCTC 1 cut(s) 886
SapI GCTCTTC 1 cut(s) 606
SaqAI TTAA 2 cut(s) 324, 605
SatI GCNGC 3 cut(s) 249, 617, 669
Sau3AI GATC 3 cut(s) 190, 515, 529
Sau96I GGNCC 1 cut(s) 902
ScrFI CCNGG 2 cut(s) 135, 289
SduI GDGCHC 1 cut(s) 886
SfaNI GCATC 4 cut(s) 274, 355, 625, 882
SfcI CTRYAG 1 cut(s) 849
SfuI TTCGAA 1 cut(s) 743
SinI GGWCC 1 cut(s) 902
SphI GCATGC 1 cut(s) 112
Sse9I AATT 7 cut(s) 56, 204, 321, 495, 691, 709, 762
SsiI CCGC 1 cut(s) 298
SspI AATATT 1 cut(s) 22
SspMI CTAG 2 cut(s) 66, 486
SstI GAGCTC 1 cut(s) 886
StyD4I CCNGG 2 cut(s) 133, 287
TaaI ACNGT 3 cut(s) 419, 473, 771
TaiI ACGT 1 cut(s) 602
TaqI TCGA 2 cut(s) 743, 774
TasI AATT 7 cut(s) 56, 204, 321, 495, 691, 709, 762
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 2 cut(s) 324, 605
Tru9I TTAA 2 cut(s) 324, 605
TscAI CASTG 1 cut(s) 510
TseFI GTSAC 2 cut(s) 227, 542
TseI GCWGC 3 cut(s) 248, 616, 668
Tsp45I GTSAC 2 cut(s) 227, 542
TspDTI ATGAA 2 cut(s) 452, 729
TspRI CASTG 1 cut(s) 510
VpaK11BI GGWCC 1 cut(s) 902
XceI RCATGY 4 cut(s) 48, 112, 166, 916
XmiI GTMKAC 1 cut(s) 398
XspI CTAG 2 cut(s) 66, 486
Zsp2I ATGCAT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.