Rroxscaffold_3G00249480
ERF Family

RING FYVE PHD zinc finger superfamily protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
43165261 .. 43174264
9004 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00249480.1

Sequence Viewer

Length: 228 bp
ATGGAGTTGTCGTGGAAAAAGGGAGCTGAATCTCAACCTATTGACTCCAATGGTGGATCAGATATGGAGCAAGATTTGATGAATGTTTGTGAAATCTGTGGGGATGCAGGTCATAAAAAATTGCTTGCTAGATGTAGCAAGTGTAGCAATGGGGCAAAACACATGCACTCTATTGAGGTCAAAGTCATTTCATGTTGTACACTTAGAAGTGAAAGGCAAACAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.21

Weight (kDa)

6.8

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019182)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 64
AfaI GTAC 1 cut(s) 199
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AlwI GGATC 1 cut(s) 64
BfaI CTAG 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 98
BmsI GCATC 1 cut(s) 94
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 154
BseGI GGATG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 154
Bsp1407I TGTACA 1 cut(s) 197
Bsp143I GATC 1 cut(s) 56
BspMI ACCTGC 1 cut(s) 98
BspPI GGATC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 197
BssMI GATC 1 cut(s) 56
BstAUI TGTACA 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 1 cut(s) 59
BstMBI GATC 1 cut(s) 56
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 166
BtsCI GGATG 1 cut(s) 109
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 126
Csp6I GTAC 1 cut(s) 198
CviAII CATG 2 cut(s) 163, 192
CviJI RGCY 1 cut(s) 26
CviKI_1 RGCY 1 cut(s) 26
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 1 cut(s) 203
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
FaeI CATG 2 cut(s) 166, 195
FaiI YATR 4 cut(s) 65, 114, 164, 193
FatI CATG 2 cut(s) 162, 191
FokI GGATG 1 cut(s) 116
FspBI CTAG 1 cut(s) 129
Hin1II CATG 2 cut(s) 166, 195
HinfI GANTC 2 cut(s) 29, 44
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 107, 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 2 cut(s) 166, 195
Kzo9I GATC 1 cut(s) 56
LmnI GCTCC 2 cut(s) 23, 67
LpnPI CCDG 1 cut(s) 93
LweI GCATC 1 cut(s) 94
MaeI CTAG 1 cut(s) 129
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MluCI AATT 1 cut(s) 119
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeII GATC 1 cut(s) 56
NlaIII CATG 2 cut(s) 166, 195
NspI RCATGY 1 cut(s) 166
PfeI GAWTC 1 cut(s) 29
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
Sau3AI GATC 1 cut(s) 56
SchI GAGTC 1 cut(s) 38
SetI ASST 4 cut(s) 28, 40, 112, 180
SfaNI GCATC 1 cut(s) 94
SgeI CNNG 8 cut(s) 24, 83, 120, 137, 141, 151, 175, 204
Sse9I AATT 1 cut(s) 119
SspMI CTAG 1 cut(s) 129
TasI AATT 1 cut(s) 119
TatI WGTACW 1 cut(s) 197
TfiI GAWTC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 95, 180
XceI RCATGY 1 cut(s) 166
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.