Rh7CG262200

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019182
Physical Location & Seq
Reverse (-)
25610147 .. 25620080
9934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG262200.1

Sequence Viewer

Length: 774 bp
ATGGTTAAGCAATATATTACTCATAGGAGTCTTCAGGAAATTTCTGCAACTATTGAGAGAGTTGCAGTACCAGAGAGTGATTGTCCAAGGGTAGAGAATGAAGTGGACAGTAGTAAAAAATTGCTTGCTAGATGTAGCAAGTGCAGCAATGCGGCAGAACACATTTGTTGCATGCGTGTAAAATGGACAAACTTCCTGGAAGTGATTGGATGTGTGAAGAATTCATGTGTAAGGAAGAATCAGAGAAACAAGATCAAAAAGCACTCTGTTGAGCATACAATTGTCAGCAATAATGCTACTGGTGACAATGAGAAGATAAATGCTACAAGAACGATGGGTGTTGTCTTGCCAAAGAGTTACAGTAAAATTGTACCTAGTGGTCAAATTAGTTCACTTCATTTTGGATCTAGAGGTCATGATCCGGAGACTGGTGACTTAAAAACAAACAACATTTCAGAAGCTAAAGAACTTGCTAGCGAAGACTCAACGAAAGCCTTATGCGAGATACTCTTCGAACATTTTCCCCCTAGTTTGTGCAATTCCACAACTCGATTGCATATAGGTGGATTTGAAATGTGGGAAAATGGAAAACTCTCATCTTCTTGTGCTGGAATTCAATCACACTTGACAATTCTTGCTTCACCTAAATTCTCAGAAAACCATGCAACAGAAGATAATATAGCTCTTTTCTTCATTACTGAAGATCTTGAGAGCTACGAAAGACAATACAAGCCTTTTTTGGAATGCATGGTGAGGGATGATTTGGCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

28.75

Weight (kDa)

6.56

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 216 - 257 2.3e-07 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019182)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17850
prunus_persica Prupe.5G038800_v2.0.a1 Prupe.5G038800_v2.0.a1
rosa_roxburghii Rroxscaffold_3G00249480
rosa_samantha Rh7AG246500 Rh7BG241600 Rh7CG262200 Rh7DG252800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 421
AciI CCGC 1 cut(s) 152
AclWI GGATC 2 cut(s) 412, 413
AcsI RAATTY 4 cut(s) 39, 220, 612, 647
AcuI CTGAAG 2 cut(s) 17, 720
AfaI GTAC 2 cut(s) 69, 372
AfiI CCNNNNNNNGG 1 cut(s) 428
AgsI TTSAA 2 cut(s) 572, 617
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 3 cut(s) 461, 683, 714
AluI AGCT 3 cut(s) 461, 683, 714
Alw26I GTCTC 1 cut(s) 419
AlwI GGATC 2 cut(s) 412, 413
Aor13HI TCCGGA 1 cut(s) 421
ApeKI GCWGC 1 cut(s) 144
ApoI RAATTY 4 cut(s) 39, 220, 612, 647
Asp700I GAANNNNTTC 1 cut(s) 519
AsuHPI GGTGA 4 cut(s) 314, 443, 633, 763
AsuII TTCGAA 1 cut(s) 513
AsuNHI GCTAGC 1 cut(s) 473
BbsI GAAGAC 2 cut(s) 23, 486
BbvI GCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 5 cut(s) 129, 375, 408, 474, 528
BglII AGATCT 1 cut(s) 703
BisI GCNGC 2 cut(s) 145, 153
BlsI GCNGC 2 cut(s) 146, 154
Bme1390I CCNGG 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 197
BmtI GCTAGC 1 cut(s) 477
BpiI GAAGAC 2 cut(s) 23, 486
Bpu14I TTCGAA 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 728
BsaJI CCNNGG 1 cut(s) 86
BsaWI WCCGGW 1 cut(s) 421
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 2 cut(s) 304, 433
Bse3DI GCAATG 1 cut(s) 154
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 86
BseGI GGATG 2 cut(s) 215, 763
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMI GCAATG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 666
BseNI ACTGG 2 cut(s) 304, 433
BseXI GCAGC 1 cut(s) 156
BsgI GTGCAG 1 cut(s) 163
BsiSI CCGG 1 cut(s) 422
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 1 cut(s) 419
BsmI GAATGC 1 cut(s) 749
Bsp119I TTCGAA 1 cut(s) 513
Bsp13I TCCGGA 1 cut(s) 421
Bsp143I GATC 4 cut(s) 252, 404, 418, 703
BspACI CCGC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 665
BspEI TCCGGA 1 cut(s) 421
BspHI TCATGA 1 cut(s) 415
BspOI GCTAGC 1 cut(s) 477
BspPI GGATC 2 cut(s) 412, 413
BspT104I TTCGAA 1 cut(s) 513
BsrDI GCAATG 1 cut(s) 154
BsrI ACTGG 2 cut(s) 304, 433
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 4 cut(s) 252, 404, 418, 703
BssT1I CCWWGG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 110, 362
Bst6I CTCTTC 1 cut(s) 515
BstBI TTCGAA 1 cut(s) 513
BstC8I GCNNGC 3 cut(s) 126, 173, 475
BstDEI CTNAG 1 cut(s) 652
BstF5I GGATG 2 cut(s) 215, 763
BstKTI GATC 4 cut(s) 255, 407, 421, 706
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 4 cut(s) 252, 404, 418, 703
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 156
BstV2I GAAGAC 2 cut(s) 23, 486
BstX2I RGATCY 2 cut(s) 404, 703
BstYI RGATCY 2 cut(s) 404, 703
BtsCI GGATG 2 cut(s) 215, 763
Cac8I GCNNGC 3 cut(s) 126, 173, 475
CciI TCATGA 1 cut(s) 415
Csp6I GTAC 2 cut(s) 68, 371
CviAII CATG 5 cut(s) 172, 225, 416, 662, 748
CviJI RGCY 6 cut(s) 461, 494, 683, 714, 733, 767
CviKI_1 RGCY 6 cut(s) 461, 494, 683, 714, 733, 767
CviQI GTAC 2 cut(s) 68, 371
DdeI CTNAG 1 cut(s) 652
DpnI GATC 4 cut(s) 254, 406, 420, 705
DpnII GATC 4 cut(s) 252, 404, 418, 703
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
Eco130I CCWWGG 1 cut(s) 86
Eco57I CTGAAG 2 cut(s) 17, 720
EcoRI GAATTC 2 cut(s) 220, 612
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 86
EcoT22I ATGCAT 1 cut(s) 749
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 5 cut(s) 175, 228, 419, 665, 751
FatI CATG 5 cut(s) 171, 224, 415, 661, 747
Fnu4HI GCNGC 2 cut(s) 145, 153
FokI GGATG 2 cut(s) 222, 770
Fsp4HI GCNGC 2 cut(s) 145, 153
FspBI CTAG 5 cut(s) 129, 375, 408, 474, 528
GluI GCNGC 2 cut(s) 145, 153
HapII CCGG 1 cut(s) 422
Hin1II CATG 5 cut(s) 175, 228, 419, 665, 751
HinfI GANTC 3 cut(s) 28, 238, 482
HpaII CCGG 1 cut(s) 422
HphI GGTGA 4 cut(s) 314, 443, 633, 763
Hpy166II GTNNAC 2 cut(s) 106, 392
Hpy188I TCNGA 3 cut(s) 243, 457, 655
Hpy188III TCNNGA 5 cut(s) 35, 408, 416, 422, 707
Hpy8I GTNNAC 2 cut(s) 106, 392
HpyCH4III ACNGT 2 cut(s) 110, 362
HpyCH4V TGCA 8 cut(s) 47, 65, 144, 171, 537, 556, 665, 747
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 652
Hsp92II CATG 5 cut(s) 175, 228, 419, 665, 751
Kpn2I TCCGGA 1 cut(s) 421
Kzo9I GATC 4 cut(s) 252, 404, 418, 703
LpnPI CCDG 8 cut(s) 20, 84, 182, 209, 285, 414, 435, 594
Lsp1109I GCAGC 1 cut(s) 156
MaeI CTAG 5 cut(s) 129, 375, 408, 474, 528
MaeIII GTNAC 3 cut(s) 302, 356, 431
MalI GATC 4 cut(s) 254, 406, 420, 705
MboI GATC 4 cut(s) 252, 404, 418, 703
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 2 cut(s) 404, 703
MlyI GAGTC 2 cut(s) 37, 476
MnlI CCTC 2 cut(s) 404, 747
Mph1103I ATGCAT 1 cut(s) 749
MroI TCCGGA 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 519
MseI TTAA 2 cut(s) 6, 437
MslI CAYNNNNRTG 1 cut(s) 561
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 749
MvaI CCWGG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeII GATC 4 cut(s) 252, 404, 418, 703
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 5 cut(s) 175, 228, 419, 665, 751
NmuCI GTSAC 2 cut(s) 302, 431
NsiI ATGCAT 1 cut(s) 749
NspI RCATGY 1 cut(s) 175
NspV TTCGAA 1 cut(s) 513
PaeI GCATGC 1 cut(s) 175
PagI TCATGA 1 cut(s) 415
PctI GAATGC 1 cut(s) 749
PdmI GAANNNNTTC 1 cut(s) 519
PfeI GAWTC 1 cut(s) 238
PfoI TCCNGGA 1 cut(s) 195
PkrI GCNGC 2 cut(s) 146, 154
PleI GAGTC 2 cut(s) 36, 476
PpsI GAGTC 2 cut(s) 36, 476
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PsuI RGATCY 2 cut(s) 404, 703
RsaI GTAC 2 cut(s) 69, 372
RsaNI GTAC 2 cut(s) 68, 371
RseI CAYNNNNRTG 1 cut(s) 561
SaqAI TTAA 2 cut(s) 6, 437
SatI GCNGC 2 cut(s) 145, 153
Sau3AI GATC 4 cut(s) 252, 404, 418, 703
SchI GAGTC 2 cut(s) 37, 476
ScrFI CCNGG 1 cut(s) 197
SetI ASST 7 cut(s) 376, 415, 463, 565, 646, 685, 716
SfuI TTCGAA 1 cut(s) 513
SmiMI CAYNNNNRTG 1 cut(s) 561
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
SphI GCATGC 1 cut(s) 175
SsiI CCGC 1 cut(s) 152
SspMI CTAG 5 cut(s) 129, 375, 408, 474, 528
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 2 cut(s) 110, 362
TaqI TCGA 2 cut(s) 513, 550
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 2 cut(s) 6, 437
Tru9I TTAA 2 cut(s) 6, 437
TseFI GTSAC 2 cut(s) 302, 431
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 2 cut(s) 302, 431
TspDTI ATGAA 4 cut(s) 114, 213, 386, 682
XapI RAATTY 4 cut(s) 39, 220, 612, 647
XbaI TCTAGA 1 cut(s) 407
XceI RCATGY 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 519
XspI CTAG 5 cut(s) 129, 375, 408, 474, 528
Zsp2I ATGCAT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.