AT4G18395

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017528
Physical Location & Seq
Forward (+)
10169385 .. 10169930
546 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18395.1

Sequence Viewer

Length: 360 bp
ATGTTGCAAAAATCACCCTACATCTTTATCTCCGACGACAATGATCAGAATAATCTCCAGTACACGAGCTTGAAAGACGTGATCTCAAGTTCCGATGGATTTGGTTCGTTGTTTTGTCACCCACAATACAGTGTTCCTTCACAAGATGGTTTTCTCTTGTCAGAGATGGATTCTTCTAACATCGCCATTAGCAACGAGCTCGTGAAAAGAGCAGCCTCGATGTATGTTCAATCTTCTATGATTGTCATTGCTCCTGACACGAATTGGTTCCAGAGATTCTGTTTGAAGGCTAAGCATCAGGCGGTTGCTGCGATTGATTGTCTTAGACCGGTTTGCCGGATTTTCGCTCGGTCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.32

Weight (kDa)

6.02

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18395
fragaria_vesca FvH4_3g05210
prunus_persica Prupe.4G083800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014511
rosa_laevigata RLG00000032119
rosa_multiflora Rmu_sc0013570.1_g000004
rosa_roxburghii Rroxscaffold_1G00062020
rosa_rugosa Rorug05G0018800
rosa_samantha Rh5BG111000 Rh5CG122600 Rh5DG109900
rosa_wichuraiana Rw5G009890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 302
AfaI GTAC 1 cut(s) 62
AgeI ACCGGT 1 cut(s) 328
AgsI TTSAA 3 cut(s) 73, 230, 286
AjiI CACGTC 1 cut(s) 79
AluBI AGCT 2 cut(s) 69, 199
AluI AGCT 2 cut(s) 69, 199
Alw21I GWGCWC 1 cut(s) 201
ApeKI GCWGC 2 cut(s) 212, 308
AsiGI ACCGGT 1 cut(s) 328
Asp700I GAANNNNTTC 1 cut(s) 266
AsuHPI GGTGA 2 cut(s) 6, 110
BanII GRGCYC 1 cut(s) 201
BauI CACGAG 2 cut(s) 64, 200
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 224, 295
BccI CCATC 3 cut(s) 89, 140, 160
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BclI TGATCA 1 cut(s) 43
BfaI CTAG 1 cut(s) 354
BisI GCNGC 2 cut(s) 213, 309
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 2 cut(s) 214, 310
BmgBI CACGTC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 269
BmsI GCATC 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 41
Bpu1102I GCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 328
Bse118I RCCGGY 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 224, 295
BshTI ACCGGT 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 2 cut(s) 329, 337
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 2 cut(s) 43, 81
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 328
BsrI ACTGG 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 328
BssMI GATC 2 cut(s) 43, 81
BssSI CACGAG 2 cut(s) 64, 200
Bst2BI CACGAG 2 cut(s) 64, 200
Bst4CI ACNGT 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 291, 323
BstKTI GATC 2 cut(s) 46, 84
BstMBI GATC 2 cut(s) 43, 81
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstV1I GCAGC 2 cut(s) 224, 295
BtgZI GCGATG 1 cut(s) 166
BtrI CACGTC 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 328
Csp6I GTAC 1 cut(s) 61
CspAI ACCGGT 1 cut(s) 328
CviJI RGCY 4 cut(s) 69, 199, 215, 290
CviKI_1 RGCY 4 cut(s) 69, 199, 215, 290
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 2 cut(s) 291, 323
DpnI GATC 2 cut(s) 45, 83
DpnII GATC 2 cut(s) 43, 81
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 201
FaiI YATR 2 cut(s) 225, 239
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 213, 309
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 213, 309
FspBI CTAG 1 cut(s) 354
GluI GCNGC 2 cut(s) 213, 309
GsuI CTGGAG 1 cut(s) 41
HapII CCGG 2 cut(s) 329, 337
HinfI GANTC 2 cut(s) 170, 276
HpaII CCGG 2 cut(s) 329, 337
HphI GGTGA 2 cut(s) 6, 110
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 4 cut(s) 34, 48, 94, 163
Hpy188III TCNNGA 3 cut(s) 202, 254, 271
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 147, 280
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 2 cut(s) 291, 323
HpySE526I ACGT 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 2 cut(s) 43, 81
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 6 cut(s) 71, 267, 284, 284, 342, 350
Lsp1109I GCAGC 2 cut(s) 224, 295
LweI GCATC 1 cut(s) 304
MaeI CTAG 1 cut(s) 354
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 116
MalI GATC 2 cut(s) 45, 83
MboI GATC 2 cut(s) 43, 81
MboII GAAGA 2 cut(s) 165, 225
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 266
MseI TTAA 1 cut(s) 358
MspI CCGG 2 cut(s) 329, 337
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 2 cut(s) 43, 81
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 266
PfeI GAWTC 2 cut(s) 170, 276
PinAI ACCGGT 1 cut(s) 328
PkrI GCNGC 2 cut(s) 214, 310
Psp124BI GAGCTC 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 269
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 2 cut(s) 213, 309
Sau3AI GATC 2 cut(s) 43, 81
SduI GDGCHC 1 cut(s) 201
SetI ASST 3 cut(s) 71, 81, 201
SfaNI GCATC 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 1 cut(s) 262
SsiI CCGC 1 cut(s) 302
SspMI CTAG 1 cut(s) 354
SstI GAGCTC 1 cut(s) 201
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 218
TaqII GACCGA 1 cut(s) 339
TasI AATT 1 cut(s) 262
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 2 cut(s) 170, 276
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 2 cut(s) 212, 308
Tsp45I GTSAC 1 cut(s) 116
TspRI CASTG 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 266
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.