Rroxscaffold_1G00062020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017528
Physical Location & Seq
Reverse (-)
84043399 .. 84045056
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062020.1

Sequence Viewer

Length: 570 bp
ATGGACACCGAACTTCCCACCATAAAAAGCCTACCAGCAATAATCATTGGTAGAAATTCATCTACAAGCAGCAGACCGGACCAAGACATCGAAGATGATCCACAATTCCGATATACGAGCTTGAAGGACATCATATTGCACTCACCACAAAGCAGCACGGCAGTTTCAGACGAACCATGGAACTATGAGTTCGACCCCTCCAACATTACAATCCGAAACCAATTGGTGAAGCGCGCGGCCTCGGCTTACGTGCAGTCCGCGGCGATACTAGCCTGCACTCGAAACCAAAGCATCTTAGTGAGCTTCTGGGGGAGGCTCCTGAGGGGGCATTGCGTGGGTTTGAGTTCGGGATGGGATACATATATTAGGAGCCCTATAGAAGCTTGCCTGAGGCCTGTTTTACAGTTTTTTGCTTGCATAGTGGGCAATGTGAGGAGTACATTGAACAAATTAATTAACAACTGCAGGTTGATCGAAGAACGGAAGGTAAAACTTCCAGAACCTACCGGTAAAATTGCCGTTGAAAATTCCGTACAAGGCTCACGCGTTCAAAGTCTTCAACAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.09

Weight (kDa)

8.65

Isoelectric Point (pI)

75.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18395
fragaria_vesca FvH4_3g05210
prunus_persica Prupe.4G083800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014511
rosa_laevigata RLG00000032119
rosa_multiflora Rmu_sc0013570.1_g000004
rosa_roxburghii Rroxscaffold_1G00062020
rosa_rugosa Rorug05G0018800
rosa_samantha Rh5BG111000 Rh5CG122600 Rh5DG109900
rosa_wichuraiana Rw5G009890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 456
AccII CGCG 4 cut(s) 234, 236, 260, 546
AciI CCGC 3 cut(s) 236, 258, 260
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 2 cut(s) 55, 526
AfaI GTAC 2 cut(s) 439, 534
AflIII ACRYGT 1 cut(s) 544
AgeI ACCGGT 1 cut(s) 506
AgsI TTSAA 5 cut(s) 124, 445, 524, 551, 560
AluBI AGCT 3 cut(s) 120, 303, 383
AluI AGCT 3 cut(s) 120, 303, 383
AlwI GGATC 1 cut(s) 92
AoxI GGCC 2 cut(s) 237, 392
ApeKI GCWGC 2 cut(s) 69, 153
ApoI RAATTY 2 cut(s) 55, 526
AseI ATTAAT 1 cut(s) 452
AsiGI ACCGGT 1 cut(s) 506
AspLEI GCGC 2 cut(s) 234, 236
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 135, 238
AvaII GGWCC 1 cut(s) 79
AxyI CCTNAGG 2 cut(s) 320, 389
BanII GRGCYC 1 cut(s) 374
BbsI GAAGAC 1 cut(s) 548
BbvI GCAGC 2 cut(s) 81, 165
BccI CCATC 1 cut(s) 345
BceAI ACGGC 2 cut(s) 174, 503
BcgI CGANNNNNNTGC 2 cut(s) 454, 488
BciVI GTATCC 1 cut(s) 349
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 2 cut(s) 375, 463
BfuAI ACCTGC 1 cut(s) 456
BfuI GTATCC 1 cut(s) 349
BisI GCNGC 4 cut(s) 70, 154, 237, 261
BlsI GCNGC 4 cut(s) 71, 155, 238, 262
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 317, 371
BmsI GCATC 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 548
BsaAI YACGTR 1 cut(s) 250
BsaJI CCNNGG 3 cut(s) 176, 240, 258
BsaWI WCCGGW 2 cut(s) 76, 506
Bse118I RCCGGY 1 cut(s) 506
Bse21I CCTNAGG 2 cut(s) 320, 389
Bse3DI GCAATG 2 cut(s) 328, 433
BseDI CCNNGG 3 cut(s) 176, 240, 258
BseGI GGATG 1 cut(s) 356
BseMI GCAATG 2 cut(s) 328, 433
BseMII CTCAG 2 cut(s) 311, 380
BsePI GCGCGC 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 448
BseXI GCAGC 2 cut(s) 81, 165
BsgI GTGCAG 2 cut(s) 259, 272
Bsh1236I CGCG 4 cut(s) 234, 236, 260, 546
BshFI GGCC 2 cut(s) 239, 394
BshTI ACCGGT 1 cut(s) 506
BsiSI CCGG 2 cut(s) 77, 507
BsnI GGCC 2 cut(s) 239, 394
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 2 cut(s) 97, 471
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 3 cut(s) 236, 258, 260
BspANI GGCC 2 cut(s) 239, 394
BspCNI CTCAG 2 cut(s) 312, 381
BspFNI CGCG 4 cut(s) 234, 236, 260, 546
BspLI GGNNCC 2 cut(s) 317, 371
BspMAI CTGCAG 1 cut(s) 467
BspMI ACCTGC 1 cut(s) 456
BspPI GGATC 1 cut(s) 92
BsrDI GCAATG 2 cut(s) 328, 433
BsrFI RCCGGY 1 cut(s) 506
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 3 cut(s) 176, 240, 258
BssHII GCGCGC 1 cut(s) 232
BssMI GATC 2 cut(s) 97, 471
BssT1I CCWWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 405
BstBAI YACGTR 1 cut(s) 250
BstC8I GCNNGC 4 cut(s) 234, 274, 385, 415
BstDEI CTNAG 3 cut(s) 295, 320, 389
BstDSI CCRYGG 2 cut(s) 176, 258
BstF5I GGATG 1 cut(s) 356
BstFNI CGCG 4 cut(s) 234, 236, 260, 546
BstHHI GCGC 2 cut(s) 234, 236
BstKTI GATC 2 cut(s) 100, 474
BstMBI GATC 2 cut(s) 97, 471
BstMWI GCNNNNNNNGC 3 cut(s) 242, 269, 423
BstSFI CTRYAG 2 cut(s) 375, 463
BstUI CGCG 4 cut(s) 234, 236, 260, 546
BstV1I GCAGC 2 cut(s) 81, 165
BstV2I GAAGAC 1 cut(s) 548
Bsu36I CCTNAGG 2 cut(s) 320, 389
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 2 cut(s) 239, 394
BtgI CCRYGG 2 cut(s) 176, 258
BtsCI GGATG 1 cut(s) 356
BveI ACCTGC 1 cut(s) 456
Cac8I GCNNGC 4 cut(s) 234, 274, 385, 415
CfoI GCGC 2 cut(s) 234, 236
Cfr10I RCCGGY 1 cut(s) 506
Cfr13I GGNCC 1 cut(s) 79
Cfr42I CCGCGG 1 cut(s) 261
Csp6I GTAC 2 cut(s) 438, 533
CspAI ACCGGT 1 cut(s) 506
CviAII CATG 2 cut(s) 177, 567
CviQI GTAC 2 cut(s) 438, 533
DdeI CTNAG 3 cut(s) 295, 320, 389
DpnI GATC 2 cut(s) 99, 473
DpnII GATC 2 cut(s) 97, 471
Eco130I CCWWGG 1 cut(s) 176
Eco147I AGGCCT 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 79
Eco81I CCTNAGG 2 cut(s) 320, 389
EcoT14I CCWWGG 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 374
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 2 cut(s) 180, 570
FatI CATG 2 cut(s) 176, 566
Fnu4HI GCNGC 4 cut(s) 70, 154, 237, 261
FokI GGATG 1 cut(s) 363
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 4 cut(s) 70, 154, 237, 261
FspBI CTAG 1 cut(s) 269
GlaI GCGC 2 cut(s) 233, 235
GluI GCNGC 4 cut(s) 70, 154, 237, 261
HaeIII GGCC 2 cut(s) 239, 394
HapII CCGG 2 cut(s) 77, 507
HhaI GCGC 2 cut(s) 234, 236
Hin1II CATG 2 cut(s) 180, 570
Hin6I GCGC 2 cut(s) 232, 234
HinP1I GCGC 2 cut(s) 232, 234
HindIII AAGCTT 1 cut(s) 381
HpaII CCGG 2 cut(s) 77, 507
HphI GGTGA 2 cut(s) 135, 238
Hpy188I TCNGA 3 cut(s) 110, 169, 215
Hpy188III TCNNGA 3 cut(s) 319, 348, 497
HpyAV CCTTC 2 cut(s) 118, 478
HpyCH4III ACNGT 1 cut(s) 405
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 5 cut(s) 139, 253, 276, 417, 465
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 269, 423
HpyF3I CTNAG 3 cut(s) 295, 320, 389
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 2 cut(s) 180, 570
HspAI GCGC 2 cut(s) 232, 234
KspI CCGCGG 1 cut(s) 261
Kzo9I GATC 2 cut(s) 97, 471
LmnI GCTCC 2 cut(s) 321, 369
Lsp1109I GCAGC 2 cut(s) 81, 165
LweI GCATC 1 cut(s) 300
MaeI CTAG 1 cut(s) 269
MaeII ACGT 1 cut(s) 249
MalI GATC 2 cut(s) 99, 473
MboI GATC 2 cut(s) 97, 471
MboII GAAGA 3 cut(s) 104, 488, 548
MfeI CAATTG 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 7 cut(s) 55, 104, 221, 449, 453, 513, 526
MluI ACGCGT 1 cut(s) 544
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 6 cut(s) 208, 250, 306, 315, 384, 426
MseI TTAA 2 cut(s) 452, 456
MslI CAYNNNNRTG 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 2 cut(s) 77, 507
MunI CAATTG 1 cut(s) 221
MvnI CGCG 4 cut(s) 234, 236, 260, 546
MwoI GCNNNNNNNGC 3 cut(s) 242, 269, 423
NcoI CCATGG 1 cut(s) 176
NdeII GATC 2 cut(s) 97, 471
NlaIII CATG 2 cut(s) 180, 570
NlaIV GGNNCC 2 cut(s) 317, 371
NmeAIII GCCGAG 1 cut(s) 221
PacI TTAATTAA 1 cut(s) 456
PauI GCGCGC 1 cut(s) 232
PceI AGGCCT 1 cut(s) 394
PinAI ACCGGT 1 cut(s) 506
PkrI GCNGC 4 cut(s) 71, 155, 238, 262
Ppu21I YACGTR 1 cut(s) 250
PshBI ATTAAT 1 cut(s) 452
PspN4I GGNNCC 2 cut(s) 317, 371
PspPI GGNCC 1 cut(s) 79
PstI CTGCAG 1 cut(s) 467
PteI GCGCGC 1 cut(s) 232
RsaI GTAC 2 cut(s) 439, 534
RsaNI GTAC 2 cut(s) 438, 533
RseI CAYNNNNRTG 1 cut(s) 296
SacII CCGCGG 1 cut(s) 261
SaqAI TTAA 2 cut(s) 452, 456
SatI GCNGC 4 cut(s) 70, 154, 237, 261
Sau3AI GATC 2 cut(s) 97, 471
Sau96I GGNCC 1 cut(s) 79
SduI GDGCHC 1 cut(s) 374
SetI ASST 7 cut(s) 122, 252, 305, 385, 470, 489, 505
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 2 cut(s) 375, 463
Sfr303I CCGCGG 1 cut(s) 261
SgrBI CCGCGG 1 cut(s) 261
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 7 cut(s) 55, 104, 221, 449, 453, 513, 526
SseBI AGGCCT 1 cut(s) 394
SsiI CCGC 3 cut(s) 236, 258, 260
SspMI CTAG 1 cut(s) 269
StuI AGGCCT 1 cut(s) 394
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 405
TaiI ACGT 1 cut(s) 252
TaqI TCGA 4 cut(s) 90, 192, 280, 474
TasI AATT 7 cut(s) 55, 104, 221, 449, 453, 513, 526
TatI WGTACW 1 cut(s) 437
TauI GCSGC 2 cut(s) 239, 263
Tru1I TTAA 2 cut(s) 452, 456
Tru9I TTAA 2 cut(s) 452, 456
TseI GCWGC 2 cut(s) 69, 153
TspDTI ATGAA 1 cut(s) 48
TspGWI ACGGA 2 cut(s) 496, 520
VpaK11BI GGWCC 1 cut(s) 79
VspI ATTAAT 1 cut(s) 452
XapI RAATTY 2 cut(s) 55, 526
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.