RchiOBHm_Chr5g0014511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017528
Physical Location & Seq
Forward (+)
10013796 .. 10014448
653 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29496

Sequence Viewer

Length: 462 bp
ATGGACACCGAACTTCCCACCATAAAAAGCCTACCAGCAATAATCATACGTAGAAATTCATCTACAAGCAGCAGACCGGACCAAGACATCGAAGATGATCCACAATTCCGATATACGAGCTTGAAGGACATCATATTGCACTCACCACAAAGCAGCACGGCAGTTTCAGACGAACCATGGAACTATGAGTTCGACCCCTCCAACATTACAATCCGAAACCAGTTGGTGAAGCGTGCGGCCTCGGCTTACGTGCAGTCCGCGGCGATACTAGCCTGTACTCGAAACCAAAGCATCTTAGTGAGCTTCTGGGGGAGGCTCCTGAGGGGGCATTGCGTGGGTTTGAGTTCGGGATGGGATACATATATTAGGAGCCCTATAGAAGCTTGCCTGAGGCCTATTTTACAGTTTTTTGCTTGCATGGTGGGCAATGTGAGGAGTACATTAAACAATTCGGCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.09

Weight (kDa)

7.68

Isoelectric Point (pI)

83.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18395
fragaria_vesca FvH4_3g05210
prunus_persica Prupe.4G083800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014511
rosa_laevigata RLG00000032119
rosa_multiflora Rmu_sc0013570.1_g000004
rosa_roxburghii Rroxscaffold_1G00062020
rosa_rugosa Rorug05G0018800
rosa_samantha Rh5BG111000 Rh5CG122600 Rh5DG109900
rosa_wichuraiana Rw5G009890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 260
AciI CCGC 3 cut(s) 236, 258, 260
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 1 cut(s) 55
AfaI GTAC 2 cut(s) 277, 439
AgsI TTSAA 1 cut(s) 124
AluBI AGCT 3 cut(s) 120, 303, 383
AluI AGCT 3 cut(s) 120, 303, 383
AlwI GGATC 1 cut(s) 92
AoxI GGCC 2 cut(s) 237, 392
ApeKI GCWGC 2 cut(s) 69, 153
ApoI RAATTY 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 135, 238
AvaII GGWCC 1 cut(s) 79
AxyI CCTNAGG 2 cut(s) 320, 389
BanII GRGCYC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 81, 165
BccI CCATC 1 cut(s) 345
BceAI ACGGC 1 cut(s) 174
BciVI GTATCC 1 cut(s) 349
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 375
BfuI GTATCC 1 cut(s) 349
BisI GCNGC 4 cut(s) 70, 154, 237, 261
BlsI GCNGC 4 cut(s) 71, 155, 238, 262
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 317, 371
BmsI GCATC 1 cut(s) 300
BsaAI YACGTR 2 cut(s) 50, 250
BsaJI CCNNGG 3 cut(s) 176, 240, 258
BsaWI WCCGGW 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 220
Bse21I CCTNAGG 2 cut(s) 320, 389
Bse3DI GCAATG 2 cut(s) 328, 433
BseDI CCNNGG 3 cut(s) 176, 240, 258
BseGI GGATG 1 cut(s) 356
BseMI GCAATG 2 cut(s) 328, 433
BseMII CTCAG 2 cut(s) 311, 380
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 448
BseXI GCAGC 2 cut(s) 81, 165
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 260
BshFI GGCC 2 cut(s) 239, 394
BsiSI CCGG 1 cut(s) 77
BsnI GGCC 2 cut(s) 239, 394
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 176
BspACI CCGC 3 cut(s) 236, 258, 260
BspANI GGCC 2 cut(s) 239, 394
BspCNI CTCAG 2 cut(s) 312, 381
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 2 cut(s) 317, 371
BspPI GGATC 1 cut(s) 92
BsrDI GCAATG 2 cut(s) 328, 433
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 3 cut(s) 176, 240, 258
BssMI GATC 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 405
BstBAI YACGTR 2 cut(s) 50, 250
BstC8I GCNNGC 3 cut(s) 234, 385, 415
BstDEI CTNAG 3 cut(s) 295, 320, 389
BstDSI CCRYGG 2 cut(s) 176, 258
BstF5I GGATG 1 cut(s) 356
BstFNI CGCG 1 cut(s) 260
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 3 cut(s) 242, 269, 423
BstSFI CTRYAG 1 cut(s) 375
BstSNI TACGTA 1 cut(s) 50
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 2 cut(s) 81, 165
Bsu36I CCTNAGG 2 cut(s) 320, 389
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 2 cut(s) 239, 394
BtgI CCRYGG 2 cut(s) 176, 258
BtsCI GGATG 1 cut(s) 356
Cac8I GCNNGC 3 cut(s) 234, 385, 415
Cfr13I GGNCC 1 cut(s) 79
Cfr42I CCGCGG 1 cut(s) 261
Csp6I GTAC 2 cut(s) 276, 438
CviAII CATG 2 cut(s) 177, 418
CviQI GTAC 2 cut(s) 276, 438
DdeI CTNAG 3 cut(s) 295, 320, 389
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eco105I TACGTA 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 176
Eco147I AGGCCT 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 79
Eco81I CCTNAGG 2 cut(s) 320, 389
EcoT14I CCWWGG 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 374
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 2 cut(s) 180, 421
FatI CATG 2 cut(s) 176, 417
Fnu4HI GCNGC 4 cut(s) 70, 154, 237, 261
FokI GGATG 1 cut(s) 363
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 4 cut(s) 70, 154, 237, 261
FspBI CTAG 1 cut(s) 269
GluI GCNGC 4 cut(s) 70, 154, 237, 261
HaeIII GGCC 2 cut(s) 239, 394
HapII CCGG 1 cut(s) 77
Hin1II CATG 2 cut(s) 180, 421
HindIII AAGCTT 1 cut(s) 381
HpaII CCGG 1 cut(s) 77
HphI GGTGA 2 cut(s) 135, 238
Hpy188I TCNGA 3 cut(s) 110, 169, 215
Hpy188III TCNNGA 3 cut(s) 319, 348, 459
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 405
HpyCH4IV ACGT 2 cut(s) 49, 249
HpyCH4V TGCA 3 cut(s) 139, 253, 417
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 269, 423
HpyF3I CTNAG 3 cut(s) 295, 320, 389
HpySE526I ACGT 2 cut(s) 49, 249
Hsp92II CATG 2 cut(s) 180, 421
KspI CCGCGG 1 cut(s) 261
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 2 cut(s) 321, 369
LpnPI CCDG 7 cut(s) 48, 90, 233, 286, 292, 332, 401
Lsp1109I GCAGC 2 cut(s) 81, 165
LweI GCATC 1 cut(s) 300
MaeI CTAG 1 cut(s) 269
MaeII ACGT 2 cut(s) 49, 249
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 3 cut(s) 55, 104, 448
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 6 cut(s) 208, 250, 306, 315, 384, 426
MseI TTAA 1 cut(s) 443
MslI CAYNNNNRTG 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 1 cut(s) 77
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 3 cut(s) 242, 269, 423
NcoI CCATGG 1 cut(s) 176
NdeII GATC 1 cut(s) 97
NlaIII CATG 2 cut(s) 180, 421
NlaIV GGNNCC 2 cut(s) 317, 371
NmeAIII GCCGAG 1 cut(s) 221
PceI AGGCCT 1 cut(s) 394
PkrI GCNGC 4 cut(s) 71, 155, 238, 262
Ppu21I YACGTR 2 cut(s) 50, 250
PspN4I GGNNCC 2 cut(s) 317, 371
PspPI GGNCC 1 cut(s) 79
RsaI GTAC 2 cut(s) 277, 439
RsaNI GTAC 2 cut(s) 276, 438
RseI CAYNNNNRTG 1 cut(s) 296
SacII CCGCGG 1 cut(s) 261
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 4 cut(s) 70, 154, 237, 261
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 79
SduI GDGCHC 1 cut(s) 374
SetI ASST 5 cut(s) 52, 122, 252, 305, 385
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 1 cut(s) 375
Sfr303I CCGCGG 1 cut(s) 261
SgrBI CCGCGG 1 cut(s) 261
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 296
SnaBI TACGTA 1 cut(s) 50
Sse9I AATT 3 cut(s) 55, 104, 448
SseBI AGGCCT 1 cut(s) 394
SsiI CCGC 3 cut(s) 236, 258, 260
SspMI CTAG 1 cut(s) 269
StuI AGGCCT 1 cut(s) 394
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 405
TaiI ACGT 2 cut(s) 52, 252
TaqI TCGA 3 cut(s) 90, 192, 280
TasI AATT 3 cut(s) 55, 104, 448
TatI WGTACW 2 cut(s) 275, 437
TauI GCSGC 2 cut(s) 239, 263
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TseI GCWGC 2 cut(s) 69, 153
TspDTI ATGAA 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 55
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.