Prupe.4G083800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017528
Physical Location & Seq
Forward (+)
4103631 .. 4105018
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G083800.1

Sequence Viewer

Length: 492 bp
ATGGACACAGAACTCCAACTCATAAAAAACCTACCTGCACTAATACTGCGCAGAAATTCATCATCAAACTGCAGGCCTGACCAGGAAATTGAGGAAGAACATCGATACACAAGCTTGAAGGACATCCAGGAAATCGAGGAAGAACATCGATACACAAGCTTGAAGGACATCATATTGAACTCGCCACAACACAGCACCACAATCCCGGAGGAGAGTGACTTTGAATTCGATCCTTCGAACATAACGATTCGAAACCAGCTGGTGAAGCGTGCAGCCTCAGCATATGTGCAGTCAGCTGCAATATTGGCCAGCAGTCGAAACCAAAACTTCATTGCGAGCTTCTGGGGGAGGCTTAGGGGCAACGTGACATCAGGTACACGCTGGTACGCTTATGTTAGGAGCCCAATAGAAGCTTGTTTCAGGCCTATTTTGCAGTTTTTAGCTTGCATGGTTTGGAATGTGAGGACCACATTGAACATTCCAATATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.82

Weight (kDa)

6.31

Isoelectric Point (pI)

84.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18395
fragaria_vesca FvH4_3g05210
prunus_persica Prupe.4G083800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014511
rosa_laevigata RLG00000032119
rosa_multiflora Rmu_sc0013570.1_g000004
rosa_roxburghii Rroxscaffold_1G00062020
rosa_rugosa Rorug05G0018800
rosa_samantha Rh5BG111000 Rh5CG122600 Rh5DG109900
rosa_wichuraiana Rw5G009890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 43
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 2 cut(s) 55, 224
AfaI GTAC 2 cut(s) 376, 386
AgsI TTSAA 5 cut(s) 118, 163, 178, 224, 475
AjnI CCWGG 2 cut(s) 81, 126
AluBI AGCT 7 cut(s) 114, 159, 259, 296, 339, 413, 443
AluI AGCT 7 cut(s) 114, 159, 259, 296, 339, 413, 443
AlwI GGATC 1 cut(s) 224
AoxI GGCC 3 cut(s) 74, 306, 422
ApeKI GCWGC 2 cut(s) 272, 296
ApoI RAATTY 2 cut(s) 55, 224
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 465
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 274
AsuII TTCGAA 2 cut(s) 236, 250
AvaII GGWCC 1 cut(s) 465
BalI TGGCCA 1 cut(s) 308
BanII GRGCYC 1 cut(s) 404
BbvCI CCTCAGC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 283, 284
BciT130I CCWGG 2 cut(s) 83, 128
BcnI CCSGG 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 70
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 2 cut(s) 273, 297
BlsI GCNGC 2 cut(s) 274, 298
Bme1390I CCNGG 3 cut(s) 83, 128, 206
Bme18I GGWCC 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 465
BmiI GGNNCC 1 cut(s) 401
BmrFI CCNGG 3 cut(s) 83, 128, 206
Bpu10I CCTNAGC 2 cut(s) 277, 353
Bpu14I TTCGAA 2 cut(s) 236, 250
BpuMI CCSGG 1 cut(s) 206
Bsa29I ATCGAT 2 cut(s) 103, 148
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 2 cut(s) 83, 128
BseCI ATCGAT 2 cut(s) 103, 148
BseGI GGATG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 2 cut(s) 283, 284
BsgI GTGCAG 3 cut(s) 21, 291, 308
BshFI GGCC 3 cut(s) 76, 308, 424
BshVI ATCGAT 2 cut(s) 103, 148
BsiSI CCGG 1 cut(s) 206
BsnI GGCC 3 cut(s) 76, 308, 424
Bsp119I TTCGAA 2 cut(s) 236, 250
Bsp1286I GDGCHC 1 cut(s) 404
Bsp143I GATC 1 cut(s) 229
BspANI GGCC 3 cut(s) 76, 308, 424
BspCNI CTCAG 1 cut(s) 290
BspDI ATCGAT 2 cut(s) 103, 148
BspLI GGNNCC 1 cut(s) 401
BspMAI CTGCAG 1 cut(s) 74
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 1 cut(s) 224
BspT104I TTCGAA 2 cut(s) 236, 250
BsrDI GCAATG 1 cut(s) 330
BssMI GATC 1 cut(s) 229
Bst2UI CCWGG 2 cut(s) 83, 128
BstBI TTCGAA 2 cut(s) 236, 250
BstC8I GCNNGC 5 cut(s) 74, 270, 310, 337, 445
BstDEI CTNAG 2 cut(s) 277, 353
BstF5I GGATG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 4 cut(s) 265, 278, 305, 430
BstNI CCWGG 2 cut(s) 83, 128
BstSCI CCNGG 3 cut(s) 81, 126, 204
BstSFI CTRYAG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 283, 284
Bsu15I ATCGAT 2 cut(s) 103, 148
BsuRI GGCC 3 cut(s) 76, 308, 424
BsuTUI ATCGAT 2 cut(s) 103, 148
BtsCI GGATG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 5 cut(s) 74, 270, 310, 337, 445
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 465
ClaI ATCGAT 2 cut(s) 103, 148
Csp6I GTAC 2 cut(s) 375, 385
CviAII CATG 1 cut(s) 448
CviQI GTAC 2 cut(s) 375, 385
DdeI CTNAG 2 cut(s) 277, 353
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 306
Eco147I AGGCCT 2 cut(s) 76, 424
Eco24I GRGCYC 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 81, 126
EcoT38I GRGCYC 1 cut(s) 404
FaeI CATG 1 cut(s) 451
FaiI YATR 7 cut(s) 23, 173, 242, 283, 285, 393, 449
FatI CATG 1 cut(s) 447
FauNDI CATATG 1 cut(s) 283
Fnu4HI GCNGC 2 cut(s) 273, 297
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 404
Fsp4HI GCNGC 2 cut(s) 273, 297
FspI TGCGCA 1 cut(s) 50
GlaI GCGC 1 cut(s) 50
GluI GCNGC 2 cut(s) 273, 297
HaeIII GGCC 3 cut(s) 76, 308, 424
HapII CCGG 1 cut(s) 206
HhaI GCGC 1 cut(s) 51
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HindIII AAGCTT 3 cut(s) 112, 157, 411
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 206
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 377
Hpy188III TCNNGA 1 cut(s) 489
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 3 cut(s) 112, 157, 243
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 7 cut(s) 38, 72, 272, 289, 299, 433, 447
HpyF10VI GCNNNNNNNGC 4 cut(s) 265, 278, 305, 430
HpyF3I CTNAG 2 cut(s) 277, 353
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 399
Lsp1109I GCAGC 2 cut(s) 283, 284
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 2 cut(s) 215, 364
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 2 cut(s) 107, 152
MhlI GDGCHC 1 cut(s) 404
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 3 cut(s) 55, 87, 224
MluNI TGGCCA 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 6 cut(s) 85, 130, 202, 286, 342, 456
Mox20I TGGCCA 1 cut(s) 308
MscI TGGCCA 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 2 cut(s) 259, 296
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 3 cut(s) 83, 128, 206
MvaI CCWGG 2 cut(s) 83, 128
MwoI GCNNNNNNNGC 4 cut(s) 265, 278, 305, 430
NciI CCSGG 1 cut(s) 206
NdeI CATATG 1 cut(s) 283
NdeII GATC 1 cut(s) 229
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 1 cut(s) 401
NmuCI GTSAC 2 cut(s) 215, 364
NsbI TGCGCA 1 cut(s) 50
NspV TTCGAA 2 cut(s) 236, 250
PceI AGGCCT 2 cut(s) 76, 424
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PfeI GAWTC 1 cut(s) 247
PfoI TCCNGGA 2 cut(s) 126, 204
PkrI GCNGC 2 cut(s) 274, 298
Psp6I CCWGG 2 cut(s) 81, 126
PspGI CCWGG 2 cut(s) 81, 126
PspN4I GGNNCC 1 cut(s) 401
PspPI GGNCC 1 cut(s) 465
PstI CTGCAG 1 cut(s) 74
PvuII CAGCTG 2 cut(s) 259, 296
RsaI GTAC 2 cut(s) 376, 386
RsaNI GTAC 2 cut(s) 375, 385
SatI GCNGC 2 cut(s) 273, 297
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 1 cut(s) 465
ScrFI CCNGG 3 cut(s) 83, 128, 206
SduI GDGCHC 1 cut(s) 404
SfcI CTRYAG 1 cut(s) 70
SfuI TTCGAA 2 cut(s) 236, 250
SinI GGWCC 1 cut(s) 465
Sse9I AATT 3 cut(s) 55, 87, 224
SseBI AGGCCT 2 cut(s) 76, 424
SspI AATATT 1 cut(s) 303
StuI AGGCCT 2 cut(s) 76, 424
StyD4I CCNGG 3 cut(s) 81, 126, 204
TaiI ACGT 1 cut(s) 366
TaqI TCGA 7 cut(s) 103, 135, 148, 228, 236, 250, 316
TasI AATT 3 cut(s) 55, 87, 224
TfiI GAWTC 1 cut(s) 247
TseFI GTSAC 2 cut(s) 215, 364
TseI GCWGC 2 cut(s) 272, 296
Tsp45I GTSAC 2 cut(s) 215, 364
TspDTI ATGAA 2 cut(s) 48, 319
VpaK11BI GGWCC 1 cut(s) 465
XapI RAATTY 2 cut(s) 55, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.