FvH4_3g05210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017528
Physical Location & Seq
Reverse (-)
3003049 .. 3004889
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05210.t1

Sequence Viewer

Length: 456 bp
ATGATGGACACCGAACTTCACACCATAAGCCTACCAACAATTATCATACGTAGAAATTCATCTACAAGTAGCAGATTGGACGACATTGATGATCCACATTTCCGATATACGAGCTTGAAGGACATCATATTGCACTCACCACAAAGCAGCACGGCAGTTTCAGACGAACCATGGAACTATGAGTTCGACCCCTCCAACATTACTATCCGAAACCAGTTGGTGAAGCGCGCAGCCTCTGCGTATGTGCAGTCCGCTGCGATACTGGCCTGCACCCGAAATCAAAGCATCTTAGTGAGCTTCTGGGGGAGGCTCTTGGGGGGGCATTGCGTGTGTTTGAGTTCGGGATGGGATGCATATGTTAGGAGCCCTATACAAGCTTGCTTAAGGCCTATTTTGCAGTTTTTTGCTTCCGTGGTGGGCAATGTGAGGGGTACATTGAATAATTCGGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.74

Weight (kDa)

7.72

Isoelectric Point (pI)

65.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18395
fragaria_vesca FvH4_3g05210
prunus_persica Prupe.4G083800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0014511
rosa_laevigata RLG00000032119
rosa_multiflora Rmu_sc0013570.1_g000004
rosa_roxburghii Rroxscaffold_1G00062020
rosa_rugosa Rorug05G0018800
rosa_samantha Rh5BG111000 Rh5CG122600 Rh5DG109900
rosa_wichuraiana Rw5G009890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 228
AciI CCGC 1 cut(s) 252
AclWI GGATC 1 cut(s) 86
AcsI RAATTY 1 cut(s) 55
AfaI GTAC 1 cut(s) 433
AflII CTTAAG 1 cut(s) 382
AgsI TTSAA 2 cut(s) 118, 439
AluBI AGCT 3 cut(s) 114, 297, 377
AluI AGCT 3 cut(s) 114, 297, 377
AlwI GGATC 1 cut(s) 86
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 2 cut(s) 264, 386
ApeKI GCWGC 4 cut(s) 147, 230, 254, 449
ApoI RAATTY 1 cut(s) 55
AspLEI GCGC 2 cut(s) 228, 230
AsuHPI GGTGA 2 cut(s) 129, 232
BanII GRGCYC 1 cut(s) 368
BbvI GCAGC 3 cut(s) 159, 241, 242
BccI CCATC 1 cut(s) 339
BceAI ACGGC 1 cut(s) 168
BfrI CTTAAG 1 cut(s) 382
BisI GCNGC 4 cut(s) 148, 231, 255, 450
BlsI GCNGC 4 cut(s) 149, 232, 256, 451
BmiI GGNNCC 1 cut(s) 365
BmsI GCATC 2 cut(s) 294, 340
BsaAI YACGTR 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 170, 411
Bse1I ACTGG 2 cut(s) 214, 267
Bse3DI GCAATG 2 cut(s) 322, 427
BseDI CCNNGG 2 cut(s) 170, 411
BseGI GGATG 2 cut(s) 350, 355
BseMI GCAATG 2 cut(s) 322, 427
BseNI ACTGG 2 cut(s) 214, 267
BsePI GCGCGC 1 cut(s) 226
BseXI GCAGC 3 cut(s) 159, 241, 242
BsgI GTGCAG 2 cut(s) 253, 266
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 2 cut(s) 266, 388
BsnI GGCC 2 cut(s) 266, 388
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 1 cut(s) 91
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 1 cut(s) 252
BspANI GGCC 2 cut(s) 266, 388
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 365
BspPI GGATC 1 cut(s) 86
BspTI CTTAAG 1 cut(s) 382
BsrDI GCAATG 2 cut(s) 322, 427
BsrI ACTGG 2 cut(s) 214, 267
BssECI CCNNGG 2 cut(s) 170, 411
BssHII GCGCGC 1 cut(s) 226
BssMI GATC 1 cut(s) 91
BssT1I CCWWGG 1 cut(s) 170
BstAFI CTTAAG 1 cut(s) 382
BstAPI GCANNNNNTGC 1 cut(s) 236
BstBAI YACGTR 1 cut(s) 50
BstC8I GCNNGC 3 cut(s) 228, 268, 379
BstDEI CTNAG 1 cut(s) 289
BstDSI CCRYGG 2 cut(s) 170, 411
BstF5I GGATG 2 cut(s) 350, 355
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 2 cut(s) 228, 230
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 3 cut(s) 236, 263, 394
BstSNI TACGTA 1 cut(s) 50
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 3 cut(s) 159, 241, 242
BsuRI GGCC 2 cut(s) 266, 388
BtgI CCRYGG 2 cut(s) 170, 411
BtsCI GGATG 2 cut(s) 350, 355
Cac8I GCNNGC 3 cut(s) 228, 268, 379
CaiI CAGNNNCTG 1 cut(s) 236
CfoI GCGC 2 cut(s) 228, 230
Csp6I GTAC 1 cut(s) 432
CviAII CATG 2 cut(s) 171, 453
CviJI RGCY 9 cut(s) 30, 114, 233, 266, 297, 310, 366, 377, 388
CviKI_1 RGCY 9 cut(s) 30, 114, 233, 266, 297, 310, 366, 377, 388
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 1 cut(s) 289
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eco105I TACGTA 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 170
Eco147I AGGCCT 1 cut(s) 388
Eco24I GRGCYC 1 cut(s) 368
EcoT14I CCWWGG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 2 cut(s) 174, 456
FatI CATG 2 cut(s) 170, 452
FauNDI CATATG 1 cut(s) 355
Fnu4HI GCNGC 4 cut(s) 148, 231, 255, 450
FokI GGATG 2 cut(s) 357, 362
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 4 cut(s) 148, 231, 255, 450
GlaI GCGC 2 cut(s) 227, 229
GluI GCNGC 4 cut(s) 148, 231, 255, 450
HaeIII GGCC 2 cut(s) 266, 388
HhaI GCGC 2 cut(s) 228, 230
Hin1II CATG 2 cut(s) 174, 456
Hin6I GCGC 2 cut(s) 226, 228
HinP1I GCGC 2 cut(s) 226, 228
HindIII AAGCTT 1 cut(s) 375
HphI GGTGA 2 cut(s) 129, 232
Hpy188I TCNGA 3 cut(s) 104, 163, 209
Hpy188III TCNNGA 1 cut(s) 342
HpyAV CCTTC 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 5 cut(s) 133, 247, 270, 353, 397
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 263, 394
HpyF3I CTNAG 1 cut(s) 289
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 2 cut(s) 174, 456
HspAI GCGC 2 cut(s) 226, 228
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 363
LpnPI CCDG 4 cut(s) 227, 248, 280, 286
Lsp1109I GCAGC 3 cut(s) 159, 241, 242
LweI GCATC 2 cut(s) 294, 340
MaeII ACGT 1 cut(s) 49
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 3 cut(s) 39, 55, 442
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 4 cut(s) 202, 244, 300, 420
Mph1103I ATGCAT 1 cut(s) 355
MseI TTAA 1 cut(s) 383
MslI CAYNNNNRTG 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 254
MspCI CTTAAG 1 cut(s) 382
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 3 cut(s) 236, 263, 394
NcoI CCATGG 1 cut(s) 170
NdeI CATATG 1 cut(s) 355
NdeII GATC 1 cut(s) 91
NlaIII CATG 2 cut(s) 174, 456
NlaIV GGNNCC 1 cut(s) 365
NsiI ATGCAT 1 cut(s) 355
PauI GCGCGC 1 cut(s) 226
PceI AGGCCT 1 cut(s) 388
PkrI GCNGC 4 cut(s) 149, 232, 256, 451
Ppu21I YACGTR 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 365
PstNI CAGNNNCTG 1 cut(s) 236
PteI GCGCGC 1 cut(s) 226
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
RseI CAYNNNNRTG 1 cut(s) 290
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 4 cut(s) 148, 231, 255, 450
Sau3AI GATC 1 cut(s) 91
SduI GDGCHC 1 cut(s) 368
SetI ASST 4 cut(s) 52, 116, 299, 379
SfaNI GCATC 2 cut(s) 294, 340
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
SnaBI TACGTA 1 cut(s) 50
Sse9I AATT 3 cut(s) 39, 55, 442
SseBI AGGCCT 1 cut(s) 388
SsiI CCGC 1 cut(s) 252
StuI AGGCCT 1 cut(s) 388
StyI CCWWGG 1 cut(s) 170
TaiI ACGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 186
TasI AATT 3 cut(s) 39, 55, 442
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TseI GCWGC 4 cut(s) 147, 230, 254, 449
TspDTI ATGAA 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 400
Vha464I CTTAAG 1 cut(s) 382
XapI RAATTY 1 cut(s) 55
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.