AT4G19980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014463
Physical Location & Seq
Reverse (-)
10827907 .. 10828618
712 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19980.1

Sequence Viewer

Length: 384 bp
ATGGGATTTTCCCGGCATATACACGGCGGCAAGGCTACCACCGCAACCGCCGTGACAAAGAAGTCCAATGTCCCAACTCCGACGCCAAACTGCTGCGTCACGTGCCTTGCAAGACTCATCAGAAAACTGAAGAAAAAAGGGAGGTTGTTGCTGGCTACGTCGACGGCTCGGAGACAAGGGAGCTCTTTGCAATGCCGGTACGATCCAATGAGCTATTCACTCAACTTCGACGGAGGGGCGTGTGGTACACTTCCTGATGATGAGGACTACTACTTGCGGTTTTATGCTTTTTCTTCAAGATACGTTACGACTACTAACAATATCAGGAAGAGACCACCACTTCCTCGTGAATCCTTCTCTAGCGCTTCACATGAATTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.19

Weight (kDa)

9.93

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19980
fragaria_vesca FvH4_3g12620
malus_domestica MD05G1249200.v1.1 MD10G1229700.v1.1
prunus_persica Prupe.4G115000_v2.0.a1
pyrus_communis pycom05g22630 pycom10g19320
rosa_chinensis RchiOBHm_Chr5g0020591
rosa_laevigata RLG00000032540
rosa_multiflora Rmu_sc0005607.1_g000006
rosa_roxburghii Rroxscaffold_1G00057700
rosa_rugosa Rorug05G0061500
rosa_samantha Rh5AG151400 Rh5BG150900 Rh5CG162300 Rh5DG150300
rosa_wichuraiana Rw5G013400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
AccI GTMKAC 1 cut(s) 161
AciI CCGC 4 cut(s) 27, 42, 48, 277
AclWI GGATC 1 cut(s) 197
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 1 cut(s) 149
AcvI CACGTG 1 cut(s) 102
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 2 cut(s) 200, 247
AfeI AGCGCT 1 cut(s) 364
AgsI TTSAA 1 cut(s) 297
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AluBI AGCT 2 cut(s) 183, 213
AluI AGCT 2 cut(s) 183, 213
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 2 cut(s) 166, 325
AlwI GGATC 1 cut(s) 197
Aor51HI AGCGCT 1 cut(s) 364
ApeKI GCWGC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 374
AspLEI GCGC 1 cut(s) 365
AsuC2I CCSGG 1 cut(s) 13
BanII GRGCYC 1 cut(s) 185
BauI CACGAG 1 cut(s) 345
BbrPI CACGTG 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 80
BceAI ACGGC 3 cut(s) 35, 40, 180
BcnI CCSGG 1 cut(s) 13
BcoDI GTCTC 2 cut(s) 166, 325
BfaI CTAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 366
BisI GCNGC 2 cut(s) 28, 94
BlsI GCNGC 2 cut(s) 29, 95
Bme1390I CCNGG 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 13
BsaAI YACGTR 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 325
Bse118I RCCGGY 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 2 cut(s) 13, 196
BslFI GGGAC 1 cut(s) 56
BsmAI GTCTC 2 cut(s) 166, 325
BsmFI GGGAC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 4 cut(s) 27, 42, 48, 277
BspPI GGATC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 195
BssMI GATC 1 cut(s) 202
BssNI GRCGYC 1 cut(s) 83
BssSI CACGAG 1 cut(s) 345
Bst2BI CACGAG 1 cut(s) 345
Bst6I CTCTTC 1 cut(s) 323
BstACI GRCGYC 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 366
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 2 cut(s) 166, 325
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 41, 102
BstSCI CCNGG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 153
CfoI GCGC 1 cut(s) 365
Cfr10I RCCGGY 1 cut(s) 195
CseI GACGC 2 cut(s) 85, 91
Csp6I GTAC 2 cut(s) 199, 246
CviAII CATG 2 cut(s) 371, 379
CviJI RGCY 5 cut(s) 35, 155, 167, 183, 213
CviKI_1 RGCY 5 cut(s) 35, 155, 167, 183, 213
CviQI GTAC 2 cut(s) 199, 246
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 325
Eco47III AGCGCT 1 cut(s) 364
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 149
Eco72I CACGTG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 374
EcoT38I GRGCYC 1 cut(s) 185
FaeI CATG 2 cut(s) 374, 382
FaiI YATR 5 cut(s) 18, 20, 285, 372, 380
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 370, 378
FblI GTMKAC 1 cut(s) 161
Fnu4HI GCNGC 2 cut(s) 28, 94
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 28, 94
FspBI CTAG 1 cut(s) 360
GlaI GCGC 1 cut(s) 364
GluI GCNGC 2 cut(s) 28, 94
HaeII RGCGCY 1 cut(s) 366
HapII CCGG 2 cut(s) 13, 196
HgaI GACGC 2 cut(s) 85, 91
HhaI GCGC 1 cut(s) 365
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 2 cut(s) 374, 382
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 2 cut(s) 114, 350
HpaII CCGG 2 cut(s) 13, 196
Hpy166II GTNNAC 2 cut(s) 162, 248
Hpy188I TCNGA 3 cut(s) 81, 122, 171
Hpy188III TCNNGA 4 cut(s) 254, 297, 325, 347
Hpy8I GTNNAC 2 cut(s) 162, 248
Hpy99I CGWCG 4 cut(s) 85, 163, 166, 233
HpyAV CCTTC 1 cut(s) 364
HpyCH4IV ACGT 3 cut(s) 101, 158, 303
HpyCH4V TGCA 2 cut(s) 110, 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 102
HpySE526I ACGT 3 cut(s) 101, 158, 303
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 2 cut(s) 374, 382
HspAI GCGC 1 cut(s) 363
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 5 cut(s) 26, 137, 209, 267, 310
Lsp1109I GCAGC 1 cut(s) 80
MaeI CTAG 1 cut(s) 360
MaeII ACGT 3 cut(s) 101, 158, 303
MaeIII GTNAC 3 cut(s) 52, 97, 304
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 3 cut(s) 142, 285, 340
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 1 cut(s) 374
MlyI GAGTC 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 4 cut(s) 135, 227, 256, 354
MspI CCGG 2 cut(s) 13, 196
MspR9I CCNGG 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 41, 102
NciI CCSGG 1 cut(s) 13
NdeII GATC 1 cut(s) 202
NlaIII CATG 2 cut(s) 374, 382
NmuCI GTSAC 2 cut(s) 52, 97
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 2 cut(s) 29, 95
PleI GAGTC 1 cut(s) 108
PmaCI CACGTG 1 cut(s) 102
PmlI CACGTG 1 cut(s) 102
PpsI GAGTC 1 cut(s) 108
Ppu21I YACGTR 1 cut(s) 102
Psp124BI GAGCTC 1 cut(s) 185
PspCI CACGTG 1 cut(s) 102
RsaI GTAC 2 cut(s) 200, 247
RsaNI GTAC 2 cut(s) 199, 246
SacI GAGCTC 1 cut(s) 185
SalI GTCGAC 1 cut(s) 160
SatI GCNGC 2 cut(s) 28, 94
Sau3AI GATC 1 cut(s) 202
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 1 cut(s) 185
SetI ASST 6 cut(s) 104, 146, 161, 185, 215, 306
SgrDI CGTCGACG 1 cut(s) 160
Sse9I AATT 1 cut(s) 374
SsiI CCGC 4 cut(s) 27, 42, 48, 277
SspMI CTAG 1 cut(s) 360
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 11
TaiI ACGT 3 cut(s) 104, 161, 306
TaqI TCGA 2 cut(s) 161, 228
TasI AATT 1 cut(s) 374
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 1 cut(s) 350
TseFI GTSAC 2 cut(s) 52, 97
TseI GCWGC 1 cut(s) 93
Tsp45I GTSAC 2 cut(s) 52, 97
TspDTI ATGAA 1 cut(s) 367
TspGWI ACGGA 1 cut(s) 246
XapI RAATTY 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 161
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.