pycom10g19320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014463
Physical Location & Seq
Forward (+)
22443777 .. 22444151
375 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g19320.1

Sequence Viewer

Length: 375 bp
ATGTGGCTTATTTCTTGGCCGAAGACCACTTGCCCCACCAAGACCGGTGGTCCTGAAGGTGTCACCCCCACCACAACCGCCGCCAATAGGTGTATGAATGGTTTATCATCCCACTGCACTTGTCTAACCAAACTGGTGAGGAAGCTAATTAGGAAACATAGGAGAAGGGTAAGGGCTGCAGCTAGCAGGCAAAGTTCATTGCAGTCCCACTATGATCCACTGAGCTATTCTCTCAACTTTGATGCCAGTGGGTGTGGGAACTTGTTGGATGACCAAGATTACTTCAAGTTCTGTGCATTTTCCTCCAGGTTTGTGGCCAACCCGTCAGGAAACTCAGCTTCTACTCCCAGGCTAGACACCACCACTCCTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.67

Weight (kDa)

9.69

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19980
fragaria_vesca FvH4_3g12620
malus_domestica MD05G1249200.v1.1 MD10G1229700.v1.1
prunus_persica Prupe.4G115000_v2.0.a1
pyrus_communis pycom05g22630 pycom10g19320
rosa_chinensis RchiOBHm_Chr5g0020591
rosa_laevigata RLG00000032540
rosa_multiflora Rmu_sc0005607.1_g000006
rosa_roxburghii Rroxscaffold_1G00057700
rosa_rugosa Rorug05G0061500
rosa_samantha Rh5AG151400 Rh5BG150900 Rh5CG162300 Rh5DG150300
rosa_wichuraiana Rw5G013400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 78, 81
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 2 cut(s) 17, 315
AcuI CTGAAG 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 87
AgeI ACCGGT 1 cut(s) 44
AgsI TTSAA 1 cut(s) 286
AhdI GACNNNNNGTC 1 cut(s) 48
AjnI CCWGG 2 cut(s) 305, 347
AluBI AGCT 4 cut(s) 145, 182, 225, 338
AluI AGCT 4 cut(s) 145, 182, 225, 338
AlwI GGATC 1 cut(s) 209
AoxI GGCC 2 cut(s) 17, 315
ApeKI GCWGC 2 cut(s) 176, 179
AsiGI ACCGGT 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 55, 148
AsuNHI GCTAGC 1 cut(s) 182
AvaII GGWCC 1 cut(s) 50
BalI TGGCCA 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 2 cut(s) 163, 191
BciT130I CCWGG 2 cut(s) 307, 349
BfaI CTAG 3 cut(s) 183, 353, 373
BfmI CTRYAG 1 cut(s) 177
BisI GCNGC 3 cut(s) 81, 177, 180
BlsI GCNGC 3 cut(s) 82, 178, 181
Bme1390I CCNGG 2 cut(s) 307, 349
Bme18I GGWCC 1 cut(s) 50
BmeRI GACNNNNNGTC 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 50
BmrFI CCNGG 2 cut(s) 307, 349
BmsI GCATC 1 cut(s) 232
BmtI GCTAGC 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 29
BplI GAGNNNNNCTC 2 cut(s) 214, 246
BpmI CTGGAG 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 347
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 1 cut(s) 349
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 2 cut(s) 138, 246
Bse3DI GCAATG 1 cut(s) 197
BseBI CCWGG 2 cut(s) 307, 349
BseDI CCNNGG 1 cut(s) 347
BseGI GGATG 2 cut(s) 107, 274
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMI GCAATG 1 cut(s) 197
BseMII CTCAG 2 cut(s) 212, 348
BseNI ACTGG 2 cut(s) 138, 246
BseRI GAGGAG 1 cut(s) 357
BseXI GCAGC 2 cut(s) 163, 191
BsgI GTGCAG 1 cut(s) 100
BshFI GGCC 2 cut(s) 19, 317
BshTI ACCGGT 1 cut(s) 44
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 2 cut(s) 19, 317
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 2 cut(s) 78, 81
BspANI GGCC 2 cut(s) 19, 317
BspCNI CTCAG 2 cut(s) 213, 347
BspMAI CTGCAG 1 cut(s) 181
BspOI GCTAGC 1 cut(s) 186
BspPI GGATC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 2 cut(s) 138, 246
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 1 cut(s) 214
Bst2UI CCWGG 2 cut(s) 307, 349
BstC8I GCNNGC 2 cut(s) 184, 188
BstDEI CTNAG 2 cut(s) 221, 334
BstF5I GGATG 2 cut(s) 107, 274
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstNI CCWGG 2 cut(s) 307, 349
BstSCI CCNGG 2 cut(s) 305, 347
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 163, 191
BstV2I GAAGAC 1 cut(s) 29
BstXI CCANNNNNNTGG 1 cut(s) 313
BsuRI GGCC 2 cut(s) 19, 317
BtsCI GGATG 2 cut(s) 107, 274
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 3 cut(s) 112, 218, 253
Cac8I GCNNGC 2 cut(s) 184, 188
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 50
CspAI ACCGGT 1 cut(s) 44
CspCI CAANNNNNGTGG 4 cut(s) 28, 63, 101, 136
CviJI RGCY 9 cut(s) 7, 19, 145, 176, 182, 225, 317, 338, 352
CviKI_1 RGCY 9 cut(s) 7, 19, 145, 176, 182, 225, 317, 338, 352
DdeI CTNAG 2 cut(s) 221, 334
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
DriI GACNNNNNGTC 1 cut(s) 48
EaeI YGGCCR 2 cut(s) 17, 315
Eam1105I GACNNNNNGTC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 75
EcoRII CCWGG 2 cut(s) 305, 347
FaiI YATR 3 cut(s) 95, 159, 213
FaqI GGGAC 1 cut(s) 190
Fnu4HI GCNGC 3 cut(s) 81, 177, 180
FokI GGATG 2 cut(s) 94, 281
Fsp4HI GCNGC 3 cut(s) 81, 177, 180
FspBI CTAG 3 cut(s) 183, 353, 373
GluI GCNGC 3 cut(s) 81, 177, 180
GsuI CTGGAG 1 cut(s) 289
HaeIII GGCC 2 cut(s) 19, 317
HapII CCGG 1 cut(s) 45
HpaII CCGG 1 cut(s) 45
HphI GGTGA 2 cut(s) 55, 148
Hpy188III TCNNGA 2 cut(s) 53, 327
HpyAV CCTTC 2 cut(s) 50, 159
HpyCH4V TGCA 4 cut(s) 117, 179, 202, 296
HpyF3I CTNAG 2 cut(s) 221, 334
Kzo9I GATC 1 cut(s) 214
Lsp1109I GCAGC 2 cut(s) 163, 191
LweI GCATC 1 cut(s) 232
MaeI CTAG 3 cut(s) 183, 353, 373
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 1 cut(s) 34
MlsI TGGCCA 1 cut(s) 317
MluCI AATT 1 cut(s) 147
MluNI TGGCCA 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 2 cut(s) 132, 313
Mox20I TGGCCA 1 cut(s) 317
MscI TGGCCA 1 cut(s) 317
Msp20I TGGCCA 1 cut(s) 317
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 2 cut(s) 307, 349
MvaI CCWGG 2 cut(s) 307, 349
NdeII GATC 1 cut(s) 214
NheI GCTAGC 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 61
PinAI ACCGGT 1 cut(s) 44
PkrI GCNGC 3 cut(s) 82, 178, 181
Psp6I CCWGG 2 cut(s) 305, 347
PspGI CCWGG 2 cut(s) 305, 347
PspPI GGNCC 1 cut(s) 50
PstI CTGCAG 1 cut(s) 181
SatI GCNGC 3 cut(s) 81, 177, 180
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 1 cut(s) 50
ScrFI CCNGG 2 cut(s) 307, 349
SetI ASST 7 cut(s) 61, 92, 147, 184, 227, 311, 340
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 177
SinI GGWCC 1 cut(s) 50
Sse9I AATT 1 cut(s) 147
SsiI CCGC 2 cut(s) 78, 81
SspMI CTAG 3 cut(s) 183, 353, 373
StyD4I CCNGG 2 cut(s) 305, 347
TasI AATT 1 cut(s) 147
TauI GCSGC 1 cut(s) 83
TscAI CASTG 3 cut(s) 119, 225, 253
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 2 cut(s) 176, 179
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 110, 186
TspRI CASTG 3 cut(s) 119, 225, 253
VpaK11BI GGWCC 1 cut(s) 50
XspI CTAG 3 cut(s) 183, 353, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.