Rh5AG151400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
15860392 .. 15861823
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG151400.1

Sequence Viewer

Length: 372 bp
ATGTGGCATCTTTCATGGCCCAAGACCACATGCTCCACCAAGATTGGTGGTCATGAACCTCAAACCGCCACAGCCACAGCCACCGCTGCTACCAAATGCATCACAGCCTCACCATCACCTTCTCATTGTACTTGTCTAGCCAAACTGGTGAGGAAGCTAAGGAAACAGAGAAGAAGGGTAGGCTGTGCGAAAAGTTCTTCGTTCCAGTACCGGTATGATCCACTGAGCTATTCTCTCAATTTTGATGCCAGTGGATGTGGGAACTTGTCAGATGACCAAGATTACTACAAGTTCTATGCCTTCTCTTCAAGGTTTGTGGCCAACCCATCAGGAGCCTCTTGTCCAAGACTAATCACCACCACCACTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.57

Weight (kDa)

9.53

Isoelectric Point (pI)

56.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19980
fragaria_vesca FvH4_3g12620
malus_domestica MD05G1249200.v1.1 MD10G1229700.v1.1
prunus_persica Prupe.4G115000_v2.0.a1
pyrus_communis pycom05g22630 pycom10g19320
rosa_chinensis RchiOBHm_Chr5g0020591
rosa_laevigata RLG00000032540
rosa_multiflora Rmu_sc0005607.1_g000006
rosa_roxburghii Rroxscaffold_1G00057700
rosa_rugosa Rorug05G0061500
rosa_samantha Rh5AG151400 Rh5BG150900 Rh5CG162300 Rh5DG150300
rosa_wichuraiana Rw5G013400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 66, 84
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 318
AfaI GTAC 2 cut(s) 130, 209
AgeI ACCGGT 1 cut(s) 210
AgsI TTSAA 1 cut(s) 309
AluBI AGCT 2 cut(s) 157, 228
AluI AGCT 2 cut(s) 157, 228
AlwI GGATC 1 cut(s) 212
AoxI GGCC 2 cut(s) 17, 318
ApeKI GCWGC 1 cut(s) 86
AsiGI ACCGGT 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 18
AsuHPI GGTGA 4 cut(s) 102, 108, 160, 346
BalI TGGCCA 1 cut(s) 320
BbvI GCAGC 1 cut(s) 73
BccI CCATC 2 cut(s) 121, 334
BfaI CTAG 1 cut(s) 137
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 334
BmsI GCATC 3 cut(s) 16, 108, 235
BplI GAGNNNNNCTC 2 cut(s) 217, 249
Bpu10I CCTNAGC 1 cut(s) 158
BsaWI WCCGGW 1 cut(s) 210
Bse118I RCCGGY 1 cut(s) 210
Bse1I ACTGG 3 cut(s) 150, 205, 249
BseGI GGATG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 215
BseNI ACTGG 3 cut(s) 150, 205, 249
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 2 cut(s) 19, 320
BshTI ACCGGT 1 cut(s) 210
BsiSI CCGG 1 cut(s) 211
BsnI GGCC 2 cut(s) 19, 320
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 2 cut(s) 66, 84
BspANI GGCC 2 cut(s) 19, 320
BspCNI CTCAG 1 cut(s) 216
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 334
BspPI GGATC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 210
BsrI ACTGG 3 cut(s) 150, 205, 249
BssAI RCCGGY 1 cut(s) 210
BssMI GATC 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 310
BstDEI CTNAG 2 cut(s) 158, 224
BstF5I GGATG 1 cut(s) 260
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 73
BsuRI GGCC 2 cut(s) 19, 320
BtsCI GGATG 1 cut(s) 260
BtsIMutI CAGTG 2 cut(s) 221, 256
CciI TCATGA 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 2 cut(s) 129, 208
CspAI ACCGGT 1 cut(s) 210
CspCI CAANNNNNGTGG 6 cut(s) 25, 28, 60, 63, 297, 332
CviAII CATG 3 cut(s) 15, 30, 53
CviQI GTAC 2 cut(s) 129, 208
DdeI CTNAG 2 cut(s) 158, 224
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
EcoT22I ATGCAT 1 cut(s) 101
FaeI CATG 3 cut(s) 18, 33, 56
FaiI YATR 5 cut(s) 16, 31, 54, 216, 297
FatI CATG 3 cut(s) 14, 29, 52
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 137
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 2 cut(s) 19, 320
HapII CCGG 1 cut(s) 211
Hin1II CATG 3 cut(s) 18, 33, 56
HpaII CCGG 1 cut(s) 211
HphI GGTGA 4 cut(s) 102, 108, 160, 346
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 2 cut(s) 53, 330
HpyAV CCTTC 3 cut(s) 129, 168, 310
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 158, 224
Hsp92II CATG 3 cut(s) 18, 33, 56
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 2 cut(s) 38, 332
LpnPI CCDG 5 cut(s) 131, 218, 224, 262, 315
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 3 cut(s) 16, 108, 235
MaeI CTAG 1 cut(s) 137
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 3 cut(s) 183, 189, 297
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 1 cut(s) 238
MluNI TGGCCA 1 cut(s) 320
MnlI CCTC 4 cut(s) 69, 118, 144, 346
Mox20I TGGCCA 1 cut(s) 320
Mph1103I ATGCAT 1 cut(s) 101
MscI TGGCCA 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 1 cut(s) 217
NlaIII CATG 3 cut(s) 18, 33, 56
NlaIV GGNNCC 1 cut(s) 334
NsiI ATGCAT 1 cut(s) 101
NspI RCATGY 1 cut(s) 33
PagI TCATGA 1 cut(s) 52
PinAI ACCGGT 1 cut(s) 210
PkrI GCNGC 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 18
RsaI GTAC 2 cut(s) 130, 209
RsaNI GTAC 2 cut(s) 129, 208
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 18
SetI ASST 5 cut(s) 61, 121, 159, 230, 314
SfaNI GCATC 3 cut(s) 16, 108, 235
Sse9I AATT 1 cut(s) 238
SsiI CCGC 2 cut(s) 66, 84
SspMI CTAG 1 cut(s) 137
TasI AATT 1 cut(s) 238
TatI WGTACW 1 cut(s) 128
TscAI CASTG 2 cut(s) 228, 256
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 69
TspRI CASTG 2 cut(s) 228, 256
XceI RCATGY 1 cut(s) 33
XspI CTAG 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.