Prupe.4G115000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014463
Physical Location & Seq
Reverse (-)
6185445 .. 6186157
713 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G115000.1

Sequence Viewer

Length: 354 bp
ATGTGGCTTATTTCTTGGCCCAAGAATACATGCACCACCAAGGCTGGTGGTCATAAAGGCGGCACCACCGCAACCGCGGGTACTGCCGTGGCCGCTAATTGTCTTAGTAGTTCATCATCCCACTGTACCTGTCTGGCCAAACTGGTGAGGAAGCTAAAGAAACATAGGAGAAGGATAGGGGCTGCTAGTAGACAAAGCTCATTCCAGTGCCATTATGATCCATTGAGCTATTCTCTCAACTTTGATGCAACTGGATGTGGAAACTTGTTAGATGATCAAGATTACTTCAAGTTCTATGCCTTCTCCTCCAGGTTTGTGGCCAACCAATCAGAACCTCAGCTGGTCCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.83

Weight (kDa)

9.44

Isoelectric Point (pI)

65.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19980
fragaria_vesca FvH4_3g12620
malus_domestica MD05G1249200.v1.1 MD10G1229700.v1.1
prunus_persica Prupe.4G115000_v2.0.a1
pyrus_communis pycom05g22630 pycom10g19320
rosa_chinensis RchiOBHm_Chr5g0020591
rosa_laevigata RLG00000032540
rosa_multiflora Rmu_sc0005607.1_g000006
rosa_roxburghii Rroxscaffold_1G00057700
rosa_rugosa Rorug05G0061500
rosa_samantha Rh5AG151400 Rh5BG150900 Rh5CG162300 Rh5DG150300
rosa_wichuraiana Rw5G013400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 190
AccII CGCG 1 cut(s) 77
AciI CCGC 5 cut(s) 60, 69, 75, 77, 93
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 3 cut(s) 90, 135, 318
AfaI GTAC 2 cut(s) 82, 127
AgsI TTSAA 1 cut(s) 289
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 4 cut(s) 154, 198, 228, 340
AluI AGCT 4 cut(s) 154, 198, 228, 340
AlwI GGATC 1 cut(s) 212
AoxI GGCC 4 cut(s) 17, 90, 135, 318
ApeKI GCWGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 18, 343
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 343
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BalI TGGCCA 2 cut(s) 137, 320
BanI GGYRCC 1 cut(s) 62
BbvCI CCTCAGC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 169
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 310
BclI TGATCA 1 cut(s) 274
BfaI CTAG 1 cut(s) 186
BisI GCNGC 3 cut(s) 61, 93, 183
BlsI GCNGC 3 cut(s) 62, 94, 184
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 2 cut(s) 18, 343
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 1 cut(s) 235
BplI GAGNNNNNCTC 2 cut(s) 217, 249
BpmI CTGGAG 1 cut(s) 292
Bpu10I CCTNAGC 1 cut(s) 336
BsaJI CCNNGG 3 cut(s) 39, 75, 87
Bse1I ACTGG 3 cut(s) 147, 205, 256
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 3 cut(s) 39, 75, 87
BseGI GGATG 2 cut(s) 116, 260
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 3 cut(s) 147, 205, 256
BseRI GAGGAG 1 cut(s) 295
BseXI GCAGC 1 cut(s) 169
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 4 cut(s) 19, 92, 137, 320
BshNI GGYRCC 1 cut(s) 62
BsnI GGCC 4 cut(s) 19, 92, 137, 320
Bsp143I GATC 2 cut(s) 217, 274
BspACI CCGC 5 cut(s) 60, 69, 75, 77, 93
BspANI GGCC 4 cut(s) 19, 92, 137, 320
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 62
BsrI ACTGG 3 cut(s) 147, 205, 256
BssECI CCNNGG 3 cut(s) 39, 75, 87
BssMI GATC 2 cut(s) 217, 274
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 104, 336
BstDSI CCRYGG 2 cut(s) 75, 87
BstF5I GGATG 2 cut(s) 116, 260
BstFNI CGCG 1 cut(s) 77
BstKTI GATC 2 cut(s) 220, 277
BstMBI GATC 2 cut(s) 217, 274
BstMWI GCNNNNNNNGC 2 cut(s) 83, 92
BstNI CCWGG 1 cut(s) 310
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 308
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 169
BstXI CCANNNNNNTGG 1 cut(s) 316
BsuRI GGCC 4 cut(s) 19, 92, 137, 320
BtgI CCRYGG 2 cut(s) 75, 87
BtsCI GGATG 2 cut(s) 116, 260
BtsIMutI CAGTG 2 cut(s) 121, 212
Cfr13I GGNCC 2 cut(s) 18, 343
Cfr42I CCGCGG 1 cut(s) 78
Csp6I GTAC 2 cut(s) 81, 126
CspCI CAANNNNNGTGG 2 cut(s) 28, 63
CviAII CATG 1 cut(s) 30
CviQI GTAC 2 cut(s) 81, 126
DdeI CTNAG 2 cut(s) 104, 336
DpnI GATC 2 cut(s) 219, 276
DpnII GATC 2 cut(s) 217, 274
EaeI YGGCCR 3 cut(s) 90, 135, 318
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 33
FaiI YATR 5 cut(s) 31, 54, 165, 216, 297
FatI CATG 1 cut(s) 29
FauI CCCGC 1 cut(s) 70
FbaI TGATCA 1 cut(s) 274
FblI GTMKAC 1 cut(s) 190
Fnu4HI GCNGC 3 cut(s) 61, 93, 183
FokI GGATG 2 cut(s) 103, 267
Fsp4HI GCNGC 3 cut(s) 61, 93, 183
FspBI CTAG 1 cut(s) 186
GluI GCNGC 3 cut(s) 61, 93, 183
GsuI CTGGAG 1 cut(s) 292
HaeIII GGCC 4 cut(s) 19, 92, 137, 320
Hin1II CATG 1 cut(s) 33
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 165, 310
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 2 cut(s) 33, 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 92
HpyF3I CTNAG 2 cut(s) 104, 336
Hsp92II CATG 1 cut(s) 33
Ksp22I TGATCA 1 cut(s) 274
KspI CCGCGG 1 cut(s) 78
Kzo9I GATC 2 cut(s) 217, 274
LpnPI CCDG 9 cut(s) 30, 119, 128, 142, 218, 237, 295, 322, 326
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 235
MaeI CTAG 1 cut(s) 186
MalI GATC 2 cut(s) 219, 276
MboI GATC 2 cut(s) 217, 274
MlsI TGGCCA 2 cut(s) 137, 320
MluCI AATT 1 cut(s) 97
MluNI TGGCCA 2 cut(s) 137, 320
MnlI CCTC 3 cut(s) 141, 316, 345
Mox20I TGGCCA 2 cut(s) 137, 320
MscI TGGCCA 2 cut(s) 137, 320
MslI CAYNNNNRTG 1 cut(s) 205
Msp20I TGGCCA 2 cut(s) 137, 320
MspA1I CMGCKG 2 cut(s) 77, 340
MspR9I CCNGG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 310
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 83, 92
NdeII GATC 2 cut(s) 217, 274
NlaIII CATG 1 cut(s) 33
NlaIV GGNNCC 1 cut(s) 64
NspI RCATGY 1 cut(s) 33
PkrI GCNGC 3 cut(s) 62, 94, 184
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 18, 343
PvuII CAGCTG 1 cut(s) 340
RsaI GTAC 2 cut(s) 82, 127
RsaNI GTAC 2 cut(s) 81, 126
RseI CAYNNNNRTG 1 cut(s) 205
SacII CCGCGG 1 cut(s) 78
SatI GCNGC 3 cut(s) 61, 93, 183
Sau3AI GATC 2 cut(s) 217, 274
Sau96I GGNCC 2 cut(s) 18, 343
ScrFI CCNGG 1 cut(s) 310
SetI ASST 7 cut(s) 131, 156, 200, 230, 314, 337, 342
SfaNI GCATC 1 cut(s) 235
Sfr303I CCGCGG 1 cut(s) 78
SgrBI CCGCGG 1 cut(s) 78
SinI GGWCC 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 205
Sse9I AATT 1 cut(s) 97
SsiI CCGC 5 cut(s) 60, 69, 75, 77, 93
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 308
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 125
TasI AATT 1 cut(s) 97
TauI GCSGC 2 cut(s) 63, 95
TscAI CASTG 2 cut(s) 128, 212
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 2 cut(s) 128, 212
VpaK11BI GGWCC 1 cut(s) 343
XceI RCATGY 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 190
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.