AT4G21445

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012906
Physical Location & Seq
Forward (+)
11424666 .. 11425836
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G21445.1

Sequence Viewer

Length: 465 bp
ATGAACATTGCCATTCATAATTACCGTCACTCAAAATTCATCGTAAATCCTCACATAGACAAGACTTTTGCAAGGACTCGACAGGCAAGATCAAATAATATTACATTCATGACAAGTACTCATGGAAGAAGAAGAACGATGGGACTTTGTTTGGTAAGAGCAAGTGCCGAGACCGGAGAAGAAGAATCCGACGATCAAAACAAGCCTGAGAGAAGAAGTTTCTTGAGCTTAGCAGAAGCTGGTCTAGTCGAAATCTCAGGCCTTGGTGCACACGAGAAGTTTCTCTGTCGACTAACGATATCATCATTGAATTTGCTAAGAGTGATATCAGAGCAAGAAGGATGTTCAATAGAAGAGTTGAATGCTGGCAAAATATGTGATTGGTTCCTTAAGGACAAGCTGAAGAGAGAGCATAACATTGAATCTGCTGTTCTTCAATGGGATGATCCCGATTTTCCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.62

Weight (kDa)

6.59

Isoelectric Point (pI)

69.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21445
fragaria_vesca FvH4_3g03820 FvH4_3g03870
malus_domestica MD05G1326300.v1.1 MD10G1304300.v1.1
prunus_persica Prupe.4G035400_v2.0.a1
pyrus_communis pycom05g30070 pycom10g25680
rosa_chinensis RchiOBHm_Chr5g0006121
rosa_laevigata RLG00000031381
rosa_multiflora Rmu_sc0004331.1_g000011
rosa_roxburghii Rroxscaffold_1G00069880
rosa_rugosa Rorug04G0419600
rosa_samantha Rh5AG047400 Rh5BG046100 Rh5CG054800 Rh5DG045900
rosa_wichuraiana Rw5G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 289
AclWI GGATC 1 cut(s) 440
AcsI RAATTY 2 cut(s) 35, 310
AcuI CTGAAG 1 cut(s) 422
AfaI GTAC 1 cut(s) 118
AflII CTTAAG 1 cut(s) 389
AgsI TTSAA 5 cut(s) 310, 348, 361, 422, 437
AluBI AGCT 3 cut(s) 228, 239, 400
AluI AGCT 3 cut(s) 228, 239, 400
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 1 cut(s) 164
Alw44I GTGCAC 1 cut(s) 267
AlwI GGATC 1 cut(s) 440
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 1 cut(s) 259
ApaLI GTGCAC 1 cut(s) 267
ApoI RAATTY 2 cut(s) 35, 310
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
BaeGI GKGCMC 1 cut(s) 271
BauI CACGAG 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 271
BccI CCATC 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 245
BfrI CTTAAG 1 cut(s) 389
BlpI GCTNAGC 1 cut(s) 229
BmcAI AGTACT 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 386
Bpu1102I GCTNAGC 1 cut(s) 229
BpuEI CTTGAG 1 cut(s) 244
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 262
BsaWI WCCGGW 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 2 cut(s) 347, 448
BseMI GCAATG 1 cut(s) 6
BseMII CTCAG 2 cut(s) 198, 270
BseSI GKGCMC 1 cut(s) 271
BshFI GGCC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 271
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 156
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 1 cut(s) 261
Bso31I GGTCTC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 3 cut(s) 89, 193, 445
Bsp1720I GCTNAGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 2 cut(s) 199, 269
BspHI TCATGA 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 386
BspPI GGATC 1 cut(s) 440
BspTI CTTAAG 1 cut(s) 389
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 3 cut(s) 89, 193, 445
BssSI CACGAG 1 cut(s) 272
BssT1I CCWWGG 1 cut(s) 262
Bst2BI CACGAG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 2 cut(s) 348, 398
BstAFI CTTAAG 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 4 cut(s) 207, 229, 256, 317
BstF5I GGATG 2 cut(s) 347, 448
BstKTI GATC 3 cut(s) 92, 196, 448
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 3 cut(s) 89, 193, 445
BstSLI GKGCMC 1 cut(s) 271
BsuRI GGCC 1 cut(s) 261
BtsCI GGATG 2 cut(s) 347, 448
Cac8I GCNNGC 1 cut(s) 367
CaiI CAGNNNCTG 1 cut(s) 239
CciI TCATGA 1 cut(s) 108
Csp6I GTAC 1 cut(s) 117
CviAII CATG 2 cut(s) 109, 122
CviJI RGCY 5 cut(s) 205, 228, 239, 261, 400
CviKI_1 RGCY 5 cut(s) 205, 228, 239, 261, 400
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 4 cut(s) 207, 229, 256, 317
DpnI GATC 3 cut(s) 91, 195, 447
DpnII GATC 3 cut(s) 89, 193, 445
Eam1104I CTCTTC 2 cut(s) 348, 398
EarI CTCTTC 2 cut(s) 348, 398
Eco130I CCWWGG 1 cut(s) 262
Eco147I AGGCCT 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 164
Eco32I GATATC 2 cut(s) 300, 327
Eco57I CTGAAG 1 cut(s) 422
EcoRV GATATC 2 cut(s) 300, 327
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 2 cut(s) 112, 125
FaiI YATR 6 cut(s) 18, 56, 110, 123, 376, 414
FaqI GGGAC 1 cut(s) 156
FatI CATG 2 cut(s) 108, 121
FblI GTMKAC 1 cut(s) 289
FokI GGATG 2 cut(s) 354, 455
FspBI CTAG 1 cut(s) 245
HaeIII GGCC 1 cut(s) 261
HapII CCGG 1 cut(s) 174
Hin1II CATG 2 cut(s) 112, 125
HincII GTYRAC 1 cut(s) 290
HindII GTYRAC 1 cut(s) 290
HinfI GANTC 3 cut(s) 76, 185, 422
HpaII CCGG 1 cut(s) 174
Hpy166II GTNNAC 2 cut(s) 269, 290
Hpy188I TCNGA 2 cut(s) 190, 331
Hpy188III TCNNGA 3 cut(s) 109, 223, 449
Hpy8I GTNNAC 2 cut(s) 269, 290
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 71, 269
HpyF3I CTNAG 4 cut(s) 207, 229, 256, 317
Hsp92II CATG 2 cut(s) 112, 125
Kzo9I GATC 3 cut(s) 89, 193, 445
LpnPI CCDG 6 cut(s) 68, 187, 219, 225, 243, 351
MaeI CTAG 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 26
MalI GATC 3 cut(s) 91, 195, 447
MboI GATC 3 cut(s) 89, 193, 445
MboII GAAGA 9 cut(s) 138, 141, 144, 191, 194, 225, 365, 415, 425
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 3 cut(s) 19, 35, 310
MlyI GAGTC 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 1 cut(s) 60
MseI TTAA 2 cut(s) 390, 463
MspCI CTTAAG 1 cut(s) 389
MspI CCGG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 367
NdeII GATC 3 cut(s) 89, 193, 445
NlaIII CATG 2 cut(s) 112, 125
NlaIV GGNNCC 1 cut(s) 386
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 26
PagI TCATGA 1 cut(s) 108
PceI AGGCCT 1 cut(s) 261
PctI GAATGC 1 cut(s) 367
PfeI GAWTC 2 cut(s) 185, 422
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 386
PstNI CAGNNNCTG 1 cut(s) 239
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
SalI GTCGAC 1 cut(s) 288
SaqAI TTAA 2 cut(s) 390, 463
Sau3AI GATC 3 cut(s) 89, 193, 445
ScaI AGTACT 1 cut(s) 118
SchI GAGTC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 271
SetI ASST 3 cut(s) 230, 241, 402
SmlI CTYRAG 2 cut(s) 223, 389
SmoI CTYRAG 2 cut(s) 223, 389
Sse9I AATT 3 cut(s) 19, 35, 310
SseBI AGGCCT 1 cut(s) 261
SspI AATATT 1 cut(s) 100
SspMI CTAG 1 cut(s) 245
StuI AGGCCT 1 cut(s) 261
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 79, 249, 289
TasI AATT 3 cut(s) 19, 35, 310
TatI WGTACW 1 cut(s) 116
TfiI GAWTC 2 cut(s) 185, 422
Tru1I TTAA 2 cut(s) 390, 463
Tru9I TTAA 2 cut(s) 390, 463
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 4 cut(s) 5, 17, 28, 97
Vha464I CTTAAG 1 cut(s) 389
VneI GTGCAC 1 cut(s) 267
XapI RAATTY 2 cut(s) 35, 310
XmiI GTMKAC 1 cut(s) 289
XspI CTAG 1 cut(s) 245
ZrmI AGTACT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.