FvH4_3g03870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012906
Physical Location & Seq
Forward (+)
2155134 .. 2156798
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03870.t1

Sequence Viewer

Length: 450 bp
ATGTTCTTACTGAAACCCTGTAGAACACATTATAGCACACCGATTCTCTCAAACCATTCTCATGCGCATCAGAAGCTAACAAAAACGCAGACTTCCCATTTTGCAGTACCATTGAAAACTTTGTACCCCAACAGAAGAAACCTTAGCTTCAGAGGATGTAGTGGTGATGGACAACAAGGAGAAGGCAGCAGCAGCGAGAGGAAGCCATTCTTGACTTTAGAGGAAGCTGGTCTAGTAGAAATCTCAGGCCTCGACACCCACGAGAGGTTTCTATGTCGCCTAACGATATCGTCATTGAATCTGCTAAGGGTGATATCGGAGCAAGAAGGATGCACAATTGAGGAGCTCAATGCAGGGAGGCTTTGTGACTGGTTTATGAAAGACAAGCTCAAAAGAGAGCAGAATTTAGGCTCTGCTGTTCTTCAATGGGATGACTCCCAGCCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.92

Weight (kDa)

7.7

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21445
fragaria_vesca FvH4_3g03820 FvH4_3g03870
malus_domestica MD05G1326300.v1.1 MD10G1304300.v1.1
prunus_persica Prupe.4G035400_v2.0.a1
pyrus_communis pycom05g30070 pycom10g25680
rosa_chinensis RchiOBHm_Chr5g0006121
rosa_laevigata RLG00000031381
rosa_multiflora Rmu_sc0004331.1_g000011
rosa_roxburghii Rroxscaffold_1G00069880
rosa_rugosa Rorug04G0419600
rosa_samantha Rh5AG047400 Rh5BG046100 Rh5CG054800 Rh5DG045900
rosa_wichuraiana Rw5G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 66
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 2 cut(s) 108, 125
AfiI CCNNNNNNNGG 1 cut(s) 264
AgsI TTSAA 3 cut(s) 115, 298, 425
AluBI AGCT 5 cut(s) 76, 147, 227, 346, 388
AluI AGCT 5 cut(s) 76, 147, 227, 346, 388
Alw21I GWGCWC 1 cut(s) 348
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 3 cut(s) 186, 189, 192
ApoI RAATTY 1 cut(s) 403
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 176, 322
BanII GRGCYC 1 cut(s) 348
BauI CACGAG 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 3 cut(s) 198, 201, 204
BccI CCATC 1 cut(s) 161
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 19
BisI GCNGC 3 cut(s) 187, 190, 193
BlsI GCNGC 3 cut(s) 188, 191, 194
BmsI GCATC 2 cut(s) 76, 320
Bpu10I CCTNAGC 2 cut(s) 143, 305
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bsc4I CCNNNNNNNGG 1 cut(s) 264
Bse1I ACTGG 1 cut(s) 374
BseGI GGATG 3 cut(s) 161, 335, 436
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 3 cut(s) 198, 201, 204
BseYI CCCAGC 1 cut(s) 438
BshFI GGCC 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 348
BslI CCNNNNNNNGG 1 cut(s) 264
BsnI GGCC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 348
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 257
BsrI ACTGG 1 cut(s) 374
BssSI CACGAG 1 cut(s) 260
Bst2BI CACGAG 1 cut(s) 260
BstDEI CTNAG 3 cut(s) 143, 244, 305
BstF5I GGATG 3 cut(s) 161, 335, 436
BstHHI GCGC 1 cut(s) 67
BstMWI GCNNNNNNNGC 2 cut(s) 73, 192
BstSFI CTRYAG 1 cut(s) 19
BstV1I GCAGC 3 cut(s) 198, 201, 204
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 3 cut(s) 161, 335, 436
CfoI GCGC 1 cut(s) 67
Csp6I GTAC 2 cut(s) 107, 124
CviAII CATG 1 cut(s) 62
CviQI GTAC 2 cut(s) 107, 124
DdeI CTNAG 3 cut(s) 143, 244, 305
Ecl136II GAGCTC 1 cut(s) 346
Eco147I AGGCCT 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 348
Eco32I GATATC 2 cut(s) 288, 315
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 346
EcoRV GATATC 2 cut(s) 288, 315
EcoT38I GRGCYC 1 cut(s) 348
FaeI CATG 1 cut(s) 65
FaiI YATR 4 cut(s) 33, 63, 274, 377
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FatI CATG 1 cut(s) 61
Fnu4HI GCNGC 3 cut(s) 187, 190, 193
FokI GGATG 3 cut(s) 168, 342, 443
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 3 cut(s) 187, 190, 193
FspAI RTGCGCAY 1 cut(s) 66
FspBI CTAG 1 cut(s) 233
FspI TGCGCA 1 cut(s) 66
GlaI GCGC 1 cut(s) 66
GluI GCNGC 3 cut(s) 187, 190, 193
GsaI CCCAGC 1 cut(s) 442
HaeIII GGCC 1 cut(s) 249
HhaI GCGC 1 cut(s) 67
Hin1II CATG 1 cut(s) 65
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 3 cut(s) 43, 298, 434
HphI GGTGA 2 cut(s) 176, 322
Hpy188I TCNGA 3 cut(s) 72, 152, 319
Hpy188III TCNNGA 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 176, 320
HpyCH4V TGCA 3 cut(s) 104, 333, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 192
HpyF3I CTNAG 3 cut(s) 143, 244, 305
Hsp92II CATG 1 cut(s) 65
HspAI GCGC 1 cut(s) 65
LmnI GCTCC 2 cut(s) 319, 343
LpnPI CCDG 5 cut(s) 31, 213, 231, 339, 355
Lsp1109I GCAGC 3 cut(s) 198, 201, 204
LweI GCATC 2 cut(s) 76, 320
MaeI CTAG 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 365
MboII GAAGA 2 cut(s) 147, 413
MfeI CAATTG 1 cut(s) 336
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 2 cut(s) 336, 403
MlyI GAGTC 1 cut(s) 428
MnlI CCTC 7 cut(s) 146, 192, 214, 258, 260, 334, 351
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 1 cut(s) 448
MslI CAYNNNNRTG 1 cut(s) 60
MunI CAATTG 1 cut(s) 336
MwoI GCNNNNNNNGC 2 cut(s) 73, 192
NlaIII CATG 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 365
NsbI TGCGCA 1 cut(s) 66
PceI AGGCCT 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 43, 298
PkrI GCNGC 3 cut(s) 188, 191, 194
PleI GAGTC 1 cut(s) 428
PpsI GAGTC 1 cut(s) 428
Psp124BI GAGCTC 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 438
RsaI GTAC 2 cut(s) 108, 125
RsaNI GTAC 2 cut(s) 107, 124
RseI CAYNNNNRTG 1 cut(s) 60
SacI GAGCTC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 448
SatI GCNGC 3 cut(s) 187, 190, 193
SchI GAGTC 1 cut(s) 428
SduI GDGCHC 1 cut(s) 348
SetI ASST 7 cut(s) 78, 144, 149, 229, 269, 348, 390
SfaNI GCATC 2 cut(s) 76, 320
SfcI CTRYAG 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 60
Sse9I AATT 2 cut(s) 336, 403
SseBI AGGCCT 1 cut(s) 249
SspMI CTAG 1 cut(s) 233
SstI GAGCTC 1 cut(s) 348
StuI AGGCCT 1 cut(s) 249
TaqI TCGA 1 cut(s) 252
TasI AATT 2 cut(s) 336, 403
TfiI GAWTC 2 cut(s) 43, 298
Tru1I TTAA 1 cut(s) 448
Tru9I TTAA 1 cut(s) 448
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 3 cut(s) 186, 189, 192
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 1 cut(s) 392
XapI RAATTY 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.