MD10G1304300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0012906
Physical Location & Seq
Reverse (-)
39062727 .. 39063127
401 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1304300.v1.1.491

Sequence Viewer

Length: 246 bp
ATGTTAGGTCCCCATGAAAGAAGACTTGGCGTGAGGGCAAGTAGTGGAAAAGGAGATGCAGAGAAGAAAGAAAGACGACCTTTCTTAACCCTGGAAGGAGCCTGTCCGGTAGAAATCTCTGGTCTCAGCACTCACGAAAGATTTCTCTGTCGTTTAACGATATCGTCATTGAATTTGCTGAGAGTGATGTCAGAGCAGGAAGGATGCCAAATTGAGGAGCTGGGAAGGTATGTGACTGGTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.99

Weight (kDa)

7.76

Isoelectric Point (pI)

63.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21445
fragaria_vesca FvH4_3g03820 FvH4_3g03870
malus_domestica MD05G1326300.v1.1 MD10G1304300.v1.1
prunus_persica Prupe.4G035400_v2.0.a1
pyrus_communis pycom05g30070 pycom10g25680
rosa_chinensis RchiOBHm_Chr5g0006121
rosa_laevigata RLG00000031381
rosa_multiflora Rmu_sc0004331.1_g000011
rosa_roxburghii Rroxscaffold_1G00069880
rosa_rugosa Rorug04G0419600
rosa_samantha Rh5AG047400 Rh5BG046100 Rh5CG054800 Rh5DG045900
rosa_wichuraiana Rw5G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 90
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 128
ApoI RAATTY 1 cut(s) 172
Asp700I GAANNNNTTC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 8
AvaII GGWCC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 10, 100
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 2 cut(s) 46, 194
BpiI GAAGAC 1 cut(s) 28
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 209
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 2 cut(s) 139, 170
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 230
BseYI CCCAGC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 128
Bso31I GGTCTC 1 cut(s) 128
BspCNI CTCAG 2 cut(s) 138, 171
BspLI GGNNCC 2 cut(s) 10, 100
BspTNI GGTCTC 1 cut(s) 128
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 125, 179
BstF5I GGATG 1 cut(s) 209
BstMAI GTCTC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 8
CviAII CATG 1 cut(s) 14
CviJI RGCY 2 cut(s) 101, 220
CviKI_1 RGCY 2 cut(s) 101, 220
DdeI CTNAG 2 cut(s) 125, 179
Eco31I GGTCTC 1 cut(s) 128
Eco32I GATATC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 90
EcoRV GATATC 1 cut(s) 162
FaeI CATG 1 cut(s) 17
FaiI YATR 2 cut(s) 15, 231
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FatI CATG 1 cut(s) 13
FokI GGATG 1 cut(s) 216
GsaI CCCAGC 1 cut(s) 224
HapII CCGG 1 cut(s) 107
Hin1II CATG 1 cut(s) 17
HpaII CCGG 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 134, 243
HpyAV CCTTC 3 cut(s) 89, 194, 219
HpyCH4V TGCA 1 cut(s) 59
HpyF3I CTNAG 2 cut(s) 125, 179
Hsp92II CATG 1 cut(s) 17
LmnI GCTCC 2 cut(s) 98, 217
LpnPI CCDG 8 cut(s) 77, 104, 105, 115, 120, 182, 206, 222
LweI GCATC 2 cut(s) 46, 194
MaeIII GTNAC 1 cut(s) 232
MboII GAAGA 2 cut(s) 33, 76
MluCI AATT 2 cut(s) 172, 210
MnlI CCTC 2 cut(s) 27, 208
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 2 cut(s) 86, 155
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 2 cut(s) 10, 100
NmuCI GTSAC 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 141
PpuMI RGGWCCY 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 10, 100
PspPI GGNCC 1 cut(s) 8
PspPPI RGGWCCY 1 cut(s) 8
SaqAI TTAA 2 cut(s) 86, 155
Sau96I GGNCC 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 92
SetI ASST 4 cut(s) 10, 82, 222, 230
SfaNI GCATC 2 cut(s) 46, 194
SinI GGWCC 1 cut(s) 8
Sse9I AATT 2 cut(s) 172, 210
StyD4I CCNGG 1 cut(s) 90
TasI AATT 2 cut(s) 172, 210
Tru1I TTAA 2 cut(s) 86, 155
Tru9I TTAA 2 cut(s) 86, 155
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.