RLG00000031381

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012906
Physical Location & Seq
Reverse (-)
4542795 .. 4544454
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031381

Sequence Viewer

Length: 660 bp
ATGAGCTTGAGGTACGCGAGCAGAGTGTTGTACCAGGCAGGAATGAGGGTGATGAAAGACCAGGCCCCCAAGCTAAGTGGCGAGTCGACCGTTAAGTCTCTCAGGGATTCAGCTTCCTCAGCTTCTTCTTCTTCGTCGAAGTTACAGACGAGGCGGTTCTCTGTAACTATTGATTCAAAGGGAAGTGCTTTTAAGGAGGCCCAGAGCGAGAAGCTTAAGAAAGCAGAGGAGTCTCTGAGGACCGTCATCTCACCAATCCTCTCAAACCATCCTCATGCGCTTCAAAAGCTAACAAAAACGCAGACTTCCCATTTTGCACCATTGAAAAAATTGTACCCCCACAAACGAAAGCTTAGCTTCAGAGGATGTAGTAGTAATGGACAAGAAGGAGAAGGCGGCAGAAGCGAGAGGAAGCCATTCTTGACTTTAGAAGAAGCTGGTCTAGTCGAAATCTCAGGCCTCAGCACCCACGAGAGGTTTCTATGTCGCCTAACGATATCGTCATTGAATCTGCTAAGGGTGATATCGGAGCAAGAAGGATGCACAATTGAGGAGCTAAATGCAGGGAGAATATGCGACTGGTTTGTAAAGGACAAGCTCAAAAGAGAGCAGAATTTAGGCTCTGCTGTTCTTCAATGGGATGACTCCCAGCCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

24.45

Weight (kDa)

9.64

Isoelectric Point (pI)

58.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21445
fragaria_vesca FvH4_3g03820 FvH4_3g03870
malus_domestica MD05G1326300.v1.1 MD10G1304300.v1.1
prunus_persica Prupe.4G035400_v2.0.a1
pyrus_communis pycom05g30070 pycom10g25680
rosa_chinensis RchiOBHm_Chr5g0006121
rosa_laevigata RLG00000031381
rosa_multiflora Rmu_sc0004331.1_g000011
rosa_roxburghii Rroxscaffold_1G00069880
rosa_rugosa Rorug04G0419600
rosa_samantha Rh5AG047400 Rh5BG046100 Rh5CG054800 Rh5DG045900
rosa_wichuraiana Rw5G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 94
AccI GTMKAC 1 cut(s) 86
AccII CGCG 1 cut(s) 17
AciI CCGC 2 cut(s) 154, 396
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 1 cut(s) 343
AfaI GTAC 3 cut(s) 14, 32, 335
AfiI CCNNNNNNNGG 1 cut(s) 474
AflII CTTAAG 1 cut(s) 215
AgsI TTSAA 5 cut(s) 177, 284, 325, 508, 635
AjnI CCWGG 2 cut(s) 33, 60
Alw26I GTCTC 2 cut(s) 102, 237
AoxI GGCC 3 cut(s) 63, 198, 457
ApoI RAATTY 1 cut(s) 613
Asp700I GAANNNNTTC 1 cut(s) 416
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 3 cut(s) 64, 199, 240
AsuHPI GGTGA 3 cut(s) 61, 243, 532
AvaII GGWCC 1 cut(s) 240
BauI CACGAG 1 cut(s) 470
BbvCI CCTCAGC 2 cut(s) 118, 461
BccI CCATC 1 cut(s) 276
BciT130I CCWGG 2 cut(s) 35, 62
BcoDI GTCTC 2 cut(s) 102, 237
BfaI CTAG 1 cut(s) 443
BfrI CTTAAG 1 cut(s) 215
BisI GCNGC 1 cut(s) 397
BlpI GCTNAGC 1 cut(s) 353
BlsI GCNGC 1 cut(s) 398
Bme1390I CCNGG 2 cut(s) 35, 62
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 3 cut(s) 64, 199, 240
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 2 cut(s) 35, 62
BmsI GCATC 1 cut(s) 530
Bpu10I CCTNAGC 3 cut(s) 118, 461, 515
Bpu1102I GCTNAGC 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse1I ACTGG 1 cut(s) 584
BseBI CCWGG 2 cut(s) 35, 62
BseGI GGATG 4 cut(s) 268, 371, 545, 646
BseLI CCNNNNNNNGG 1 cut(s) 474
BseMII CTCAG 5 cut(s) 115, 132, 227, 468, 475
BseNI ACTGG 1 cut(s) 584
BseRI GAGGAG 2 cut(s) 242, 566
BseYI CCCAGC 1 cut(s) 648
Bsh1236I CGCG 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 3 cut(s) 65, 200, 459
BsiEI CGRYCG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 474
BsmAI GTCTC 2 cut(s) 102, 237
BsnI GGCC 3 cut(s) 65, 200, 459
Bsp1720I GCTNAGC 1 cut(s) 353
BspACI CCGC 2 cut(s) 154, 396
BspANI GGCC 3 cut(s) 65, 200, 459
BspCNI CTCAG 5 cut(s) 114, 131, 228, 467, 474
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 215
BsrI ACTGG 1 cut(s) 584
BssSI CACGAG 1 cut(s) 470
Bst2BI CACGAG 1 cut(s) 470
Bst2UI CCWGG 2 cut(s) 35, 62
Bst4CI ACNGT 2 cut(s) 91, 244
BstAFI CTTAAG 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 8 cut(s) 74, 101, 118, 236, 353, 454, 461, 515
BstF5I GGATG 4 cut(s) 268, 371, 545, 646
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 280
BstMAI GTCTC 2 cut(s) 102, 237
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 119, 286, 402
BstNI CCWGG 2 cut(s) 35, 62
BstSCI CCNGG 2 cut(s) 33, 60
BstUI CGCG 1 cut(s) 17
BsuRI GGCC 3 cut(s) 65, 200, 459
BtsCI GGATG 4 cut(s) 268, 371, 545, 646
Cac8I GCNNGC 1 cut(s) 19
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 3 cut(s) 64, 199, 240
Csp6I GTAC 3 cut(s) 13, 31, 334
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 1 cut(s) 275
CviQI GTAC 3 cut(s) 13, 31, 334
DdeI CTNAG 8 cut(s) 74, 101, 118, 236, 353, 454, 461, 515
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
Eco147I AGGCCT 1 cut(s) 459
Eco32I GATATC 2 cut(s) 498, 525
Eco47I GGWCC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 33, 60
EcoRV GATATC 2 cut(s) 498, 525
FaeI CATG 1 cut(s) 278
FaiI YATR 3 cut(s) 276, 484, 574
FalI AAGNNNNNCTT 4 cut(s) 341, 373, 404, 436
FatI CATG 1 cut(s) 274
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 397
FokI GGATG 4 cut(s) 255, 378, 552, 653
Fsp4HI GCNGC 1 cut(s) 397
FspBI CTAG 1 cut(s) 443
GlaI GCGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 397
GsaI CCCAGC 1 cut(s) 652
HaeIII GGCC 3 cut(s) 65, 200, 459
HhaI GCGC 1 cut(s) 280
Hin1II CATG 1 cut(s) 278
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HindIII AAGCTT 2 cut(s) 212, 350
HinfI GANTC 6 cut(s) 83, 107, 173, 230, 508, 644
HphI GGTGA 3 cut(s) 61, 243, 532
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 3 cut(s) 237, 362, 529
Hpy188III TCNNGA 1 cut(s) 421
Hpy8I GTNNAC 1 cut(s) 87
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 3 cut(s) 380, 386, 530
HpyCH4III ACNGT 2 cut(s) 91, 244
HpyCH4V TGCA 3 cut(s) 317, 543, 563
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 286, 402
HpyF3I CTNAG 8 cut(s) 74, 101, 118, 236, 353, 454, 461, 515
Hsp92II CATG 1 cut(s) 278
HspAI GCGC 1 cut(s) 278
LmnI GCTCC 2 cut(s) 529, 553
LweI GCATC 1 cut(s) 530
MaeI CTAG 1 cut(s) 443
MaeIII GTNAC 2 cut(s) 141, 163
MboII GAAGA 5 cut(s) 117, 120, 123, 443, 623
MfeI CAATTG 1 cut(s) 546
MluCI AATT 3 cut(s) 329, 546, 613
MlyI GAGTC 3 cut(s) 92, 239, 638
MroXI GAANNNNTTC 1 cut(s) 416
MseI TTAA 4 cut(s) 93, 192, 216, 658
MslI CAYNNNNRTG 1 cut(s) 273
MspCI CTTAAG 1 cut(s) 215
MspR9I CCNGG 2 cut(s) 35, 62
MunI CAATTG 1 cut(s) 546
MvaI CCWGG 2 cut(s) 35, 62
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 119, 286, 402
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 1 cut(s) 66
PceI AGGCCT 1 cut(s) 459
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 3 cut(s) 107, 173, 508
PkrI GCNGC 1 cut(s) 398
PleI GAGTC 3 cut(s) 91, 238, 638
PpsI GAGTC 3 cut(s) 91, 238, 638
Psp6I CCWGG 2 cut(s) 33, 60
PspFI CCCAGC 1 cut(s) 648
PspGI CCWGG 2 cut(s) 33, 60
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 3 cut(s) 64, 199, 240
RsaI GTAC 3 cut(s) 14, 32, 335
RsaNI GTAC 3 cut(s) 13, 31, 334
RseI CAYNNNNRTG 1 cut(s) 273
SalI GTCGAC 1 cut(s) 85
SaqAI TTAA 4 cut(s) 93, 192, 216, 658
SatI GCNGC 1 cut(s) 397
Sau96I GGNCC 3 cut(s) 64, 199, 240
SchI GAGTC 3 cut(s) 92, 239, 638
ScrFI CCNGG 2 cut(s) 35, 62
SfaNI GCATC 1 cut(s) 530
SinI GGWCC 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 2 cut(s) 7, 215
SmoI CTYRAG 2 cut(s) 7, 215
Sse9I AATT 3 cut(s) 329, 546, 613
SseBI AGGCCT 1 cut(s) 459
SsiI CCGC 2 cut(s) 154, 396
SspMI CTAG 1 cut(s) 443
StuI AGGCCT 1 cut(s) 459
StyD4I CCNGG 2 cut(s) 33, 60
TaaI ACNGT 2 cut(s) 91, 244
TaqI TCGA 3 cut(s) 86, 137, 447
TasI AATT 3 cut(s) 329, 546, 613
TauI GCSGC 1 cut(s) 399
TfiI GAWTC 3 cut(s) 107, 173, 508
Tru1I TTAA 4 cut(s) 93, 192, 216, 658
Tru9I TTAA 4 cut(s) 93, 192, 216, 658
TspDTI ATGAA 1 cut(s) 68
Vha464I CTTAAG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 1 cut(s) 613
XmiI GTMKAC 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.