Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012342

Physical Location & Seq

Genomic Coordinates Reverse (-)

11532971 .. 11534867

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21705.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGAATATACTGAGACGAATTCCGGCGAATTTGATTGCGAGCAGATATTACTACACTAACAGAGTAAAAAAGACGACACTTTACTCAAAAATCAGTCCTTTAGGAGACCCAAAATCAAGTGTTTACCCAGAACTCCAAAACTGGGTTCAATGCGGTAAAAAAGTCTCTGTTGCTGAACTTATTCGCATCGTTCACGATCTTCGTAGACGCAAACGCTTCCTCCACGCTCTCGAGGTTTCGAAATGGATGAATGAGACTGGTGTATGTGTGTTCTCTCCGACAGAACACGCGGTTCATCTTGATCTTATTGGTAGAGTTTATGGATTTGTCACTGCAGAAGAGTATTTTGAGAATCTTAAGGAACAGTATAAGAATGATAAGACTTATGGAGCTCTTTTGAATTGTTACGTTAGGCAACAGAATGTTGAGAAGTCTCTGTTGCATTTTGAGAAGATGAAGGAGATGGGTTTTGTTACTTCGTCTCTTACTTACAATAACATTATGTGTCTTTACACGAATATTGGTCAGCACGAGAAAGTTCCTAAGGTTTTGGAGGAGATGAAGGAAGAGAATGTTGCTCCGGATAACTATAGTTATAGGATATGTATTAATGCTTTTGGTGCTATGTATGATCTTGAGAGGATTGGTGGGACCTTGAGAGATATGGAGAGACGACAGGATATTACTATGGATTGGAACACTTATGCGGTTGCGGCTAAGTTTTATATTGATGGTGGTGATTGTGATAGAGCGGTTGAGCTTTTGAAGATGTCGGAGAATAGATTGGAGAAGAAAGATGGTGAAGGTTACAATCATCTCATTACGCTTTATGCTAGGTTAGGGAAGAAGATAGAGGTTTTAAGGTTATGGGATTTGGAGAAAGATGTGTGTAAAAGGAGAATAAATCAGGACTATCTTACTGTGTTGCAGTCGCTTGTGAAGATTGATGCTTTAGTTGAGGCTGAGGAAGTACTTACGGAATGGAAATCATCGGGGAACTGTTATGATTTTCGAGTGCCTAACACTGTGATTCGTGGTTACATTGGAAAAAGTATGGAGGAGAAGGCAGAAGCGATGCTTGAAGATTTAGCAAGAAGAGGGAAAGCTACTACACCAGAATCTTGGGAACTTGTGGCTACTGCTTATGCGGAAAAGGGTACTTTAGAAAATGCTTTCAAGTGTATGAAAACTGCCTTAGGTGTAGAAGTGGGTAGCAGAAAATGGAGACCTGGATTGACGCTGGTTACAAGTGTTTTGAGTTGGGTCGGGGATGAAGGAAGTTTGAAAGAAGTAGAAAGCTTTGTTGCATCTCTTAGGAATTGTATCGGTGTGAACAAACAGATGTATCATGCTCTTGTCAAGGCTGATATAAGAGAAGGCGGACGTAACATTGATACTCTGTTGCAGCGTATGAAAGATGACAAAATTGAAATCGATGAAGAAACCACAGTGATTCTCAGCACAAGAAGTCCATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

492

Amino Acids

56.58

Weight (kDa)

7.88

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	149 - 208	1.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	161 - 206	5.9e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21705
fragaria_vesca	FvH4_3g09350
malus_domestica	MD00G1095800.v1.1 MD05G1313800.v1.1
prunus_persica	Prupe.4G045900_v2.0.a1
pyrus_communis	pycom05g29160 pycom10g24750
rosa_chinensis	RchiOBHm_Chr5g0008241
rosa_laevigata	RLG00000031552
rosa_multiflora	Rmu_co8293593.1_g000001 Rmu_sc0001387.1_g000002 Rmu_sc0001626.1_g000024
rosa_roxburghii	Rroxscaffold_1G00068250
rosa_rugosa	Rorug04G0434700
rosa_samantha	Rh5AG063000 Rh5BG059200 Rh5CG069900 Rh5DG058800
rosa_wichuraiana	Rw5G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	752
AccI	GTMKAC	1 cut(s)	205
AccII	CGCG	1 cut(s)	290
AccIII	TCCGGA	1 cut(s)	580
AciI	CCGC	7 cut(s)	153, 290, 707, 713, 752, 1148, 1380
AcsI	RAATTY	2 cut(s)	18, 28
AfaI	GTAC	2 cut(s)	972, 1159
AfiI	CCNNNNNNNGG	1 cut(s)	142
AflII	CTTAAG	1 cut(s)	356
AgsI	TTSAA	7 cut(s)	149, 400, 766, 1082, 1177, 1285, 1430
AjnI	CCWGG	1 cut(s)	1228
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	4 cut(s)	392, 760, 1106, 1299
AluI	AGCT	4 cut(s)	392, 760, 1106, 1299
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	8 cut(s)	7, 99, 169, 248, 438, 486, 664, 1219
Ama87I	CYCGRG	1 cut(s)	230
Aor13HI	TCCGGA	1 cut(s)	580
ApeKI	GCWGC	1 cut(s)	1405
ApoI	RAATTY	2 cut(s)	18, 28
AseI	ATTAAT	1 cut(s)	609
Asp700I	GAANNNNTTC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	651
AsuHPI	GGTGA	2 cut(s)	749, 812
AsuII	TTCGAA	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	651
AxyI	CCTNAGG	2 cut(s)	543, 1195
BaeI	ACNNNNGTAYC	2 cut(s)	1328, 1361
BanII	GRGCYC	1 cut(s)	394
BauI	CACGAG	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	394
BbvCI	CCTCAGC	1 cut(s)	963
BbvI	GCAGC	1 cut(s)	1417
BccI	CCATC	3 cut(s)	457, 725, 791
BciT130I	CCWGG	1 cut(s)	1230
BcoDI	GTCTC	8 cut(s)	7, 99, 169, 248, 438, 486, 664, 1219
BfaI	CTAG	1 cut(s)	834
BfmI	CTRYAG	2 cut(s)	333, 589
BfrI	CTTAAG	1 cut(s)	356
BisI	GCNGC	2 cut(s)	714, 1406
BlsI	GCNGC	2 cut(s)	715, 1407
BmcAI	AGTACT	1 cut(s)	972
Bme1390I	CCNGG	1 cut(s)	1230
Bme18I	GGWCC	1 cut(s)	651
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	651
BmiI	GGNNCC	1 cut(s)	652
BmrFI	CCNGG	1 cut(s)	1230
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	4 cut(s)	195, 937, 1065, 1316
BmuI	ACTGGG	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	963
Bpu14I	TTCGAA	1 cut(s)	239
BpuEI	CTTGAG	2 cut(s)	656, 676
Bsa29I	ATCGAT	1 cut(s)	1434
BsaI	GGTCTC	2 cut(s)	99, 1219
BsaWI	WCCGGW	1 cut(s)	580
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	2 cut(s)	146, 262
Bse21I	CCTNAGG	2 cut(s)	543, 1195
BseAI	TCCGGA	1 cut(s)	580
BseBI	CCWGG	1 cut(s)	1230
BseCI	ATCGAT	1 cut(s)	1434
BseGI	GGATG	2 cut(s)	252, 1276
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	2 cut(s)	954, 1471
BseNI	ACTGG	2 cut(s)	146, 262
BseRI	GAGGAG	2 cut(s)	569, 1073
BseXI	GCAGC	1 cut(s)	1417
Bsh1236I	CGCG	1 cut(s)	290
BshVI	ATCGAT	1 cut(s)	1434
BsiHKAI	GWGCWC	1 cut(s)	394
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	23, 581
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	8 cut(s)	7, 99, 169, 248, 438, 486, 664, 1219
BsmBI	CGTCTC	3 cut(s)	7, 486, 664
BsmFI	GGGAC	1 cut(s)	664
Bso31I	GGTCTC	2 cut(s)	99, 1219
BsoBI	CYCGRG	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp13I	TCCGGA	1 cut(s)	580
Bsp143I	GATC	3 cut(s)	196, 301, 631
BspACI	CCGC	7 cut(s)	153, 290, 707, 713, 752, 1148, 1380
BspCNI	CTCAG	2 cut(s)	955, 1470
BspDI	ATCGAT	1 cut(s)	1434
BspEI	TCCGGA	1 cut(s)	580
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	652
BspMAI	CTGCAG	1 cut(s)	337
BspT104I	TTCGAA	1 cut(s)	239
BspTI	CTTAAG	1 cut(s)	356
BspTNI	GGTCTC	2 cut(s)	99, 1219
BsrBI	CCGCTC	1 cut(s)	752
BsrI	ACTGG	2 cut(s)	146, 262
BssMI	GATC	3 cut(s)	196, 301, 631
BssSI	CACGAG	1 cut(s)	530
Bst2BI	CACGAG	1 cut(s)	530
Bst2UI	CCWGG	1 cut(s)	1230
Bst4CI	ACNGT	5 cut(s)	366, 922, 1001, 1027, 1450
Bst6I	CTCTTC	3 cut(s)	333, 561, 1090
BstAFI	CTTAAG	1 cut(s)	356
BstBI	TTCGAA	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	7 cut(s)	11, 543, 717, 963, 1195, 1313, 1457
BstF5I	GGATG	2 cut(s)	252, 1276
BstFNI	CGCG	1 cut(s)	290
BstKTI	GATC	3 cut(s)	199, 304, 634
BstMAI	GTCTC	8 cut(s)	7, 99, 169, 248, 438, 486, 664, 1219
BstMBI	GATC	3 cut(s)	196, 301, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	620, 713
BstNI	CCWGG	1 cut(s)	1230
BstSCI	CCNGG	1 cut(s)	1228
BstSFI	CTRYAG	2 cut(s)	333, 589
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	1417
BstXI	CCANNNNNNTGG	1 cut(s)	1122
Bsu15I	ATCGAT	1 cut(s)	1434
Bsu36I	CCTNAGG	2 cut(s)	543, 1195
BsuTUI	ATCGAT	1 cut(s)	1434
BtgZI	GCGATG	1 cut(s)	1088
BtsCI	GGATG	2 cut(s)	252, 1276
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	3 cut(s)	330, 1023, 1455
Cac8I	GCNNGC	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	651
ClaI	ATCGAT	1 cut(s)	1434
CseI	GACGC	2 cut(s)	216, 1246
Csp6I	GTAC	2 cut(s)	971, 1158
CviAII	CATG	2 cut(s)	1349, 1473
CviJI	RGCY	8 cut(s)	392, 716, 760, 962, 1106, 1136, 1299, 1364
CviKI_1	RGCY	8 cut(s)	392, 716, 760, 962, 1106, 1136, 1299, 1364
CviQI	GTAC	2 cut(s)	971, 1158
DdeI	CTNAG	7 cut(s)	11, 543, 717, 963, 1195, 1313, 1457
DpnI	GATC	3 cut(s)	198, 303, 633
DpnII	GATC	3 cut(s)	196, 301, 631
Eam1104I	CTCTTC	3 cut(s)	333, 561, 1090
EarI	CTCTTC	3 cut(s)	333, 561, 1090
EciI	GGCGGA	1 cut(s)	1395
Ecl136II	GAGCTC	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	394
Eco31I	GGTCTC	2 cut(s)	99, 1219
Eco47I	GGWCC	1 cut(s)	651
Eco53kI	GAGCTC	1 cut(s)	392
Eco81I	CCTNAGG	2 cut(s)	543, 1195
Eco88I	CYCGRG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	651
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	1228
EcoT38I	GRGCYC	1 cut(s)	394
Esp3I	CGTCTC	3 cut(s)	7, 486, 664
FaeI	CATG	2 cut(s)	1352, 1476
FalI	AAGNNNNNCTT	2 cut(s)	1062, 1094
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	2 cut(s)	1348, 1472
FblI	GTMKAC	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	714, 1406
FokI	GGATG	2 cut(s)	259, 1283
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	2 cut(s)	714, 1406
FspBI	CTAG	1 cut(s)	834
GluI	GCNGC	2 cut(s)	714, 1406
HapII	CCGG	2 cut(s)	23, 581
HgaI	GACGC	2 cut(s)	216, 1246
Hin1II	CATG	2 cut(s)	1352, 1476
HindIII	AAGCTT	1 cut(s)	1297
HinfI	GANTC	4 cut(s)	352, 1030, 1118, 1453
HpaII	CCGG	2 cut(s)	23, 581
HphI	GGTGA	2 cut(s)	749, 812
Hpy166II	GTNNAC	4 cut(s)	124, 193, 206, 1333
Hpy188I	TCNGA	2 cut(s)	279, 775
Hpy188III	TCNNGA	6 cut(s)	194, 230, 299, 581, 635, 908
Hpy8I	GTNNAC	4 cut(s)	124, 193, 206, 1333
HpyAV	CCTTC	6 cut(s)	451, 556, 797, 1057, 1268, 1370
HpyCH4III	ACNGT	5 cut(s)	366, 922, 1001, 1027, 1450
HpyCH4IV	ACGT	2 cut(s)	408, 1384
HpyCH4V	TGCA	5 cut(s)	335, 442, 928, 1307, 1405
HpyF10VI	GCNNNNNNNGC	2 cut(s)	620, 713
HpyF3I	CTNAG	7 cut(s)	11, 543, 717, 963, 1195, 1313, 1457
HpySE526I	ACGT	2 cut(s)	408, 1384
Hsp92II	CATG	2 cut(s)	1352, 1476
Kpn2I	TCCGGA	1 cut(s)	580
Kzo9I	GATC	3 cut(s)	196, 301, 631
LmnI	GCTCC	2 cut(s)	389, 583
Lsp1109I	GCAGC	1 cut(s)	1417
LweI	GCATC	4 cut(s)	195, 937, 1065, 1316
MaeI	CTAG	1 cut(s)	834
MaeII	ACGT	2 cut(s)	408, 1384
MaeIII	GTNAC	7 cut(s)	328, 404, 472, 806, 1037, 1243, 1385
MalI	GATC	3 cut(s)	198, 303, 633
MbiI	CCGCTC	1 cut(s)	752
MboI	GATC	3 cut(s)	196, 301, 631
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	5 cut(s)	18, 28, 400, 1318, 1425
MmeI	TCCRAC	2 cut(s)	302, 753
MnlI	CCTC	9 cut(s)	226, 230, 547, 633, 847, 952, 958, 1051, 1091
MroI	TCCGGA	1 cut(s)	580
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	3 cut(s)	357, 609, 860
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	2 cut(s)	23, 581
MspR9I	CCNGG	1 cut(s)	1230
MvaI	CCWGG	1 cut(s)	1230
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	620, 713
NdeII	GATC	3 cut(s)	196, 301, 631
NlaIII	CATG	2 cut(s)	1352, 1476
NlaIV	GGNNCC	1 cut(s)	652
NmuCI	GTSAC	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	4 cut(s)	352, 1030, 1118, 1453
PkrI	GCNGC	2 cut(s)	715, 1407
PpuMI	RGGWCCY	1 cut(s)	651
PshBI	ATTAAT	1 cut(s)	609
Psp124BI	GAGCTC	1 cut(s)	394
Psp5II	RGGWCCY	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	1228
PspGI	CCWGG	1 cut(s)	1228
PspN4I	GGNNCC	1 cut(s)	652
PspPI	GGNCC	1 cut(s)	651
PspPPI	RGGWCCY	1 cut(s)	651
PstI	CTGCAG	1 cut(s)	337
RsaI	GTAC	2 cut(s)	972, 1159
RsaNI	GTAC	2 cut(s)	971, 1158
SacI	GAGCTC	1 cut(s)	394
SaqAI	TTAA	3 cut(s)	357, 609, 860
SatI	GCNGC	2 cut(s)	714, 1406
Sau3AI	GATC	3 cut(s)	196, 301, 631
Sau96I	GGNCC	1 cut(s)	651
ScaI	AGTACT	1 cut(s)	972
ScrFI	CCNGG	1 cut(s)	1230
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	4 cut(s)	195, 937, 1065, 1316
SfcI	CTRYAG	2 cut(s)	333, 589
Sfr274I	CTCGAG	1 cut(s)	230
SfuI	TTCGAA	1 cut(s)	239
SinI	GGWCC	1 cut(s)	651
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	4 cut(s)	230, 356, 635, 655
SmoI	CTYRAG	4 cut(s)	230, 356, 635, 655
Sse9I	AATT	5 cut(s)	18, 28, 400, 1318, 1425
SsiI	CCGC	7 cut(s)	153, 290, 707, 713, 752, 1148, 1380
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	1 cut(s)	834
SstI	GAGCTC	1 cut(s)	394
StyD4I	CCNGG	1 cut(s)	1228
TaaI	ACNGT	5 cut(s)	366, 922, 1001, 1027, 1450
TaiI	ACGT	2 cut(s)	411, 1387
TaqI	TCGA	4 cut(s)	231, 239, 1012, 1434
TasI	AATT	5 cut(s)	18, 28, 400, 1318, 1425
TatI	WGTACW	1 cut(s)	970
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	4 cut(s)	352, 1030, 1118, 1453
Tru1I	TTAA	3 cut(s)	357, 609, 860
Tru9I	TTAA	3 cut(s)	357, 609, 860
TscAI	CASTG	3 cut(s)	337, 1030, 1455
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	1 cut(s)	1405
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	9 cut(s)	17, 263, 284, 470, 575, 1199, 1287, 1427, 1452
TspGWI	ACGGA	1 cut(s)	992
TspRI	CASTG	3 cut(s)	337, 1030, 1455
Vha464I	CTTAAG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	651
VspI	ATTAAT	1 cut(s)	609
XapI	RAATTY	2 cut(s)	18, 28
XhoI	CTCGAG	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	1 cut(s)	834
ZrmI	AGTACT	1 cut(s)	972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.