Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8293593.1

Orthogroup ID

OG0012342

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 736

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8293593.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 481 bp

atggatcccaagctctcctccgtcaaaaccctcatccgaaacgcgattacgagcaggtcctactatacgagccggaccaagaagcctaccctctacacgaaaatcagtcctctcggaaatcggaaccaaagcgtggttccggagctcgacgactgggtctccaaaggcaacaaggtcagcgtcggcgagctccaacgcatcattcgcgaccttcgcaagcgcaagcgcttctctcaagccctacagatttctgagtggatgaatgagaagggggtatgcaagtttcggccgagtgagcatgccgtgcagctggatttgataggaagggttcgggggtttgtttcggcagaagagtatttcagtaatttgggggatggagataaggactgtaggacatatggtgctcttttgaattgctatgtccggcagctccagacggagaagtcccttggtcatttgcgcaaaatgcaggagatggggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

160

Amino Acids

18.39

Weight (kDa)

9.85

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21705
fragaria_vesca	FvH4_3g09350
malus_domestica	MD00G1095800.v1.1 MD05G1313800.v1.1
prunus_persica	Prupe.4G045900_v2.0.a1
pyrus_communis	pycom05g29160 pycom10g24750
rosa_chinensis	RchiOBHm_Chr5g0008241
rosa_laevigata	RLG00000031552
rosa_multiflora	Rmu_co8293593.1_g000001 Rmu_sc0001387.1_g000002 Rmu_sc0001626.1_g000024
rosa_roxburghii	Rroxscaffold_1G00068250
rosa_rugosa	Rorug04G0434700
rosa_samantha	Rh5AG063000 Rh5BG059200 Rh5CG069900 Rh5DG058800
rosa_wichuraiana	Rw5G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	155, 442
Acc16I	TGCGCA	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	45
AccB7I	CCANNNNNTGG	1 cut(s)	133
AccII	CGCG	2 cut(s)	44, 207
AccIII	TCCGGA	1 cut(s)	139
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	287
AfeI	AGCGCT	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	4 cut(s)	120, 152, 186, 218
AluBI	AGCT	5 cut(s)	13, 145, 190, 310, 430
AluI	AGCT	5 cut(s)	13, 145, 190, 310, 430
Alw21I	GWGCWC	3 cut(s)	147, 192, 406
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	139
Aor51HI	AGCGCT	1 cut(s)	227
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	307, 427
AspLEI	GCGC	3 cut(s)	222, 228, 462
AspS9I	GGNCC	2 cut(s)	57, 75
AvaII	GGWCC	2 cut(s)	57, 75
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	147, 192
Bbv12I	GWGCWC	3 cut(s)	147, 192, 406
BbvI	GCAGC	2 cut(s)	319, 439
BccI	CCATC	2 cut(s)	368, 469
BceAI	ACGGC	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	163
BfmI	CTRYAG	2 cut(s)	242, 388
BfoI	RGCGCY	1 cut(s)	229
BfuAI	ACCTGC	1 cut(s)	45
BisI	GCNGC	2 cut(s)	308, 428
BlsI	GCNGC	2 cut(s)	309, 429
Bme18I	GGWCC	2 cut(s)	57, 75
BmgT120I	GGNCC	2 cut(s)	57, 75
BmiI	GGNNCC	3 cut(s)	6, 125, 138
BmrI	ACTGGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	207
BmuI	ACTGGG	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	448
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	3 cut(s)	143, 173, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	158
BseAI	TCCGGA	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	3 cut(s)	33, 264, 379
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	7
BseX3I	CGGCCG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	319, 439
BsgI	GTGCAG	1 cut(s)	326
Bsh1236I	CGCG	2 cut(s)	44, 207
Bsh1285I	CGRYCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	289
BsiEI	CGRYCG	1 cut(s)	290
BsiHKAI	GWGCWC	3 cut(s)	147, 192, 406
BsiSI	CCGG	3 cut(s)	73, 140, 424
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	163
Bsp1286I	GDGCHC	3 cut(s)	147, 192, 406
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	4
Bsp68I	TCGCGA	1 cut(s)	207
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	244
BspEI	TCCGGA	1 cut(s)	139
BspFNI	CGCG	2 cut(s)	44, 207
BspLI	GGNNCC	3 cut(s)	6, 125, 138
BspMI	ACCTGC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	448
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	345
BstAPI	GCANNNNNTGC	1 cut(s)	304
BstC8I	GCNNGC	4 cut(s)	188, 218, 224, 300
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	3 cut(s)	33, 264, 379
BstFNI	CGCG	2 cut(s)	44, 207
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	3 cut(s)	222, 228, 462
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	4
BstMCI	CGRYCG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	5 cut(s)	204, 213, 295, 304, 466
BstNSI	RCATGY	1 cut(s)	302
BstSFI	CTRYAG	2 cut(s)	242, 388
BstUI	CGCG	2 cut(s)	44, 207
BstV1I	GCAGC	2 cut(s)	319, 439
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	289
BtsCI	GGATG	3 cut(s)	33, 264, 379
BtuMI	TCGCGA	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	4 cut(s)	188, 218, 224, 300
CfoI	GCGC	3 cut(s)	222, 228, 462
Cfr13I	GGNCC	2 cut(s)	57, 75
CseI	GACGC	1 cut(s)	169
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	9 cut(s)	13, 72, 85, 145, 190, 239, 289, 310, 430
CviKI_1	RGCY	9 cut(s)	13, 72, 85, 145, 190, 239, 289, 310, 430
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DrdI	GACNNNNNNGTC	2 cut(s)	155, 442
DseDI	GACNNNNNNGTC	2 cut(s)	155, 442
EaeI	YGGCCR	1 cut(s)	287
EagI	CGGCCG	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Ecl136II	GAGCTC	2 cut(s)	145, 190
EclXI	CGGCCG	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	448
Eco24I	GRGCYC	2 cut(s)	147, 192
Eco31I	GGTCTC	1 cut(s)	163
Eco47I	GGWCC	2 cut(s)	57, 75
Eco47III	AGCGCT	1 cut(s)	227
Eco52I	CGGCCG	1 cut(s)	287
Eco53kI	GAGCTC	2 cut(s)	145, 190
EcoICRI	GAGCTC	2 cut(s)	145, 190
EcoO109I	RGGNCCY	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	448
EcoT38I	GRGCYC	2 cut(s)	147, 192
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	1 cut(s)	302
FaiI	YATR	6 cut(s)	66, 277, 300, 397, 399, 420
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	1 cut(s)	298
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	308, 428
FokI	GGATG	3 cut(s)	20, 271, 386
FriOI	GRGCYC	2 cut(s)	147, 192
Fsp4HI	GCNGC	2 cut(s)	308, 428
FspI	TGCGCA	1 cut(s)	461
GlaI	GCGC	3 cut(s)	221, 227, 461
GluI	GCNGC	2 cut(s)	308, 428
GsuI	CTGGAG	1 cut(s)	416
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	3 cut(s)	73, 140, 424
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	3 cut(s)	222, 228, 462
Hin1II	CATG	1 cut(s)	302
Hin6I	GCGC	3 cut(s)	220, 226, 460
HinP1I	GCGC	3 cut(s)	220, 226, 460
HpaII	CCGG	3 cut(s)	73, 140, 424
Hpy188I	TCNGA	4 cut(s)	38, 116, 123, 253
Hpy188III	TCNNGA	3 cut(s)	140, 206, 433
Hpy99I	CGWCG	2 cut(s)	152, 185
HpyAV	CCTTC	3 cut(s)	221, 262, 318
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	3 cut(s)	279, 307, 469
HpyF10VI	GCNNNNNNNGC	5 cut(s)	204, 213, 295, 304, 466
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	302
HspAI	GCGC	3 cut(s)	220, 226, 460
Kpn2I	TCCGGA	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	3 cut(s)	142, 195, 435
LpnPI	CCDG	8 cut(s)	40, 86, 139, 153, 296, 437, 446, 455
Lsp1109I	GCAGC	2 cut(s)	319, 439
LweI	GCATC	1 cut(s)	207
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	362
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	3 cut(s)	147, 192, 406
MluCI	AATT	2 cut(s)	364, 412
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	4 cut(s)	28, 41, 101, 120
MroI	TCCGGA	1 cut(s)	139
MspA1I	CMGCKG	1 cut(s)	310
MspI	CCGG	3 cut(s)	73, 140, 424
MvnI	CGCG	2 cut(s)	44, 207
MwoI	GCNNNNNNNGC	5 cut(s)	204, 213, 295, 304, 466
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	3 cut(s)	6, 125, 138
NmeAIII	GCCGAG	1 cut(s)	315
NruI	TCGCGA	1 cut(s)	207
NsbI	TGCGCA	1 cut(s)	461
NspI	RCATGY	1 cut(s)	302
PaeI	GCATGC	1 cut(s)	302
PflFI	GACNNNGTC	1 cut(s)	155
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	309, 429
PpuMI	RGGWCCY	1 cut(s)	57
Psp124BI	GAGCTC	2 cut(s)	147, 192
Psp5II	RGGWCCY	1 cut(s)	57
PspN4I	GGNNCC	3 cut(s)	6, 125, 138
PspPI	GGNCC	2 cut(s)	57, 75
PspPPI	RGGWCCY	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	310
RruI	TCGCGA	1 cut(s)	207
SacI	GAGCTC	2 cut(s)	147, 192
SatI	GCNGC	2 cut(s)	308, 428
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	2 cut(s)	57, 75
SduI	GDGCHC	3 cut(s)	147, 192, 406
SetI	ASST	8 cut(s)	15, 59, 147, 177, 192, 213, 312, 432
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	2 cut(s)	242, 388
SinI	GGWCC	2 cut(s)	57, 75
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
SphI	GCATGC	1 cut(s)	302
Sse9I	AATT	2 cut(s)	364, 412
SstI	GAGCTC	2 cut(s)	147, 192
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	389
TaqI	TCGA	1 cut(s)	147
TasI	AATT	2 cut(s)	364, 412
TseI	GCWGC	2 cut(s)	307, 427
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	2 cut(s)	10, 452
Tth111I	GACNNNGTC	1 cut(s)	155
Van91I	CCANNNNNTGG	1 cut(s)	133
VpaK11BI	GGWCC	2 cut(s)	57, 75
XceI	RCATGY	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.