AT4G23496

SPIRAL1-like 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013065
Physical Location & Seq
Reverse (-)
12257513 .. 12258670
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G23496.1

Sequence Viewer

Length: 300 bp
ATGAGCCGAGGTGGGAGCTTTGGAGGCGGACAAAGCTCGTTAGGTTATCTTTTTGGGTCAGACAATGAGATTCCAAAAACTCCCGCTCCACCGGTAGCCCCAAAGCCTGCACCACCGTACGGTGTAGATTCCACAGAGGAGGACCATGAAGCTGACCAAAAACCCAAGATCTCTAACAACAACTACCAAAGAGTTCAGGGCCAAAACTCCGGCAACTTCGTCACCGATCGTCCAACGACGAAGGTGAAATCGGTTCCTGGTGGAGGCTCATCTCTAGGATACTTGTTCGGAGATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.37

Weight (kDa)

6.55

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23496
fragaria_vesca FvH4_5g03030
malus_domestica MD06G1089300.v1.1 MD06G1158500.v1.1 MD14G1110000.v1.1
prunus_persica Prupe.5G105200_v2.0.a1 Prupe.5G105300_v2.0.a1
pyrus_communis pycom06g08520 pycom14g10480
rosa_chinensis RchiOBHm_Chr7g0196801
rosa_multiflora Rmu_sc0001083.1_g000028
rosa_roxburghii Rroxscaffold_3G00258940
rosa_rugosa Rorug07G0036200
rosa_samantha Rh7AG160400 Rh7BG162500 Rh7CG168800 Rh7DG161700
rosa_wichuraiana Rw7G014020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 86
AciI CCGC 2 cut(s) 27, 84
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 119, 263
AgeI ACCGGT 1 cut(s) 91
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 3 cut(s) 18, 36, 152
AluI AGCT 3 cut(s) 18, 36, 152
AoxI GGCC 1 cut(s) 199
AsiGI ACCGGT 1 cut(s) 91
AspS9I GGNCC 2 cut(s) 142, 199
AsuHPI GGTGA 2 cut(s) 214, 256
AvaII GGWCC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 258
BciVI GTATCC 1 cut(s) 272
BfaI CTAG 1 cut(s) 275
BfuI GTATCC 1 cut(s) 272
BglII AGATCT 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 142, 199
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 7
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 263
Bse118I RCCGGY 1 cut(s) 91
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 7
BseLI CCNNNNNNNGG 2 cut(s) 119, 263
BseRI GAGGAG 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 1 cut(s) 201
BshTI ACCGGT 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 229
BsiSI CCGG 2 cut(s) 92, 210
BsiWI CGTACG 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 119, 263
BsnI GGCC 1 cut(s) 201
Bsp143I GATC 2 cut(s) 168, 226
BspACI CCGC 2 cut(s) 27, 84
BspANI GGCC 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 255
BsrBI CCGCTC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 2 cut(s) 168, 226
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 2 cut(s) 117, 122
BstC8I GCNNGC 1 cut(s) 108
BstENI CCTNNNNNAGG 1 cut(s) 261
BstKTI GATC 2 cut(s) 171, 229
BstMBI GATC 2 cut(s) 168, 226
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 2 cut(s) 24, 33
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BsuI GTATCC 1 cut(s) 272
BsuRI GGCC 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 142, 199
Csp6I GTAC 1 cut(s) 118
CspAI ACCGGT 1 cut(s) 91
CviAII CATG 1 cut(s) 146
CviJI RGCY 8 cut(s) 6, 18, 36, 98, 106, 152, 201, 267
CviKI_1 RGCY 8 cut(s) 6, 18, 36, 98, 106, 152, 201, 267
CviQI GTAC 1 cut(s) 118
DpnI GATC 2 cut(s) 170, 228
DpnII GATC 2 cut(s) 168, 226
EciI GGCGGA 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 256
FaeI CATG 1 cut(s) 149
FaiI YATR 1 cut(s) 147
FatI CATG 1 cut(s) 145
FauI CCCGC 1 cut(s) 91
FspBI CTAG 1 cut(s) 275
HaeIII GGCC 1 cut(s) 201
HapII CCGG 2 cut(s) 92, 210
Hin1II CATG 1 cut(s) 149
HinfI GANTC 2 cut(s) 70, 128
HpaII CCGG 2 cut(s) 92, 210
HphI GGTGA 2 cut(s) 214, 256
Hpy188I TCNGA 2 cut(s) 61, 290
Hpy99I CGWCG 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 2 cut(s) 117, 122
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 33
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 2 cut(s) 168, 226
LmnI GCTCC 2 cut(s) 15, 91
LpnPI CCDG 6 cut(s) 105, 120, 182, 223, 243, 270
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 220
MalI GATC 2 cut(s) 170, 228
MbiI CCGCTC 1 cut(s) 86
MboI GATC 2 cut(s) 168, 226
MflI RGATCY 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 257
MnlI CCTC 4 cut(s) 17, 130, 133, 257
MspI CCGG 2 cut(s) 92, 210
MspR9I CCNGG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 2 cut(s) 24, 33
NdeII GATC 2 cut(s) 168, 226
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 255
NmeAIII GCCGAG 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 70, 128
Pfl23II CGTACG 1 cut(s) 117
PinAI ACCGGT 1 cut(s) 91
Ple19I CGATCG 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspLI CGTACG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 2 cut(s) 142, 199
PsuI RGATCY 1 cut(s) 168
PvuI CGATCG 1 cut(s) 229
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
Sau3AI GATC 2 cut(s) 168, 226
Sau96I GGNCC 2 cut(s) 142, 199
ScrFI CCNGG 1 cut(s) 258
SetI ASST 6 cut(s) 13, 20, 38, 46, 154, 246
SinI GGWCC 1 cut(s) 142
SsiI CCGC 2 cut(s) 27, 84
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 2 cut(s) 117, 122
TfiI GAWTC 2 cut(s) 70, 128
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 142
XagI CCTNNNNNAGG 1 cut(s) 261
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.