Rh7AG160400

SPIRAL1-like 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013065
Physical Location & Seq
Reverse (-)
13469537 .. 13472671
3135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG160400.1

Sequence Viewer

Length: 297 bp
ATGAGTAGAGGTGGGAGCTCTGGCGGTGGACAAAGTTCATTGGGTTACTTGTTTGGCTCAGAGGAGCCACAAACTCCACCTCCCGCTGCTAAGCCAGTATTGCCGCCATACGGCATCGATACCACCACCACTGAAGATCAAAAGCCTTCAGATCATCAGACTCCTTCCAATTCCAACAACTATCGAAGAGCTGAAGGCCCAAATTCTGGAAACTTCTTAACTGATCGTCCAACAACAAAAGTTAAATCAGTTCCTGGCGGTGATTCATCACTTGGGTACTTGTTTGGAGATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.24

Weight (kDa)

5.67

Isoelectric Point (pI)

58.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23496
fragaria_vesca FvH4_5g03030
malus_domestica MD06G1089300.v1.1 MD06G1158500.v1.1 MD14G1110000.v1.1
prunus_persica Prupe.5G105200_v2.0.a1 Prupe.5G105300_v2.0.a1
pyrus_communis pycom06g08520 pycom14g10480
rosa_chinensis RchiOBHm_Chr7g0196801
rosa_multiflora Rmu_sc0001083.1_g000028
rosa_roxburghii Rroxscaffold_3G00258940
rosa_rugosa Rorug07G0036200
rosa_samantha Rh7AG160400 Rh7BG162500 Rh7CG168800 Rh7DG161700
rosa_wichuraiana Rw7G014020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 206
AciI CCGC 4 cut(s) 24, 84, 104, 258
AcsI RAATTY 1 cut(s) 202
AcuI CTGAAG 3 cut(s) 132, 153, 213
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 110, 206
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 2 cut(s) 18, 191
AluI AGCT 2 cut(s) 18, 191
Alw21I GWGCWC 1 cut(s) 20
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 272
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 255
BisI GCNGC 2 cut(s) 87, 104
BlpI GCTNAGC 1 cut(s) 90
BlsI GCNGC 2 cut(s) 88, 105
Bme1390I CCNGG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 90
Bsa29I ATCGAT 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 206
Bse1I ACTGG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 255
BseCI ATCGAT 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 110, 206
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 1 cut(s) 198
BshVI ATCGAT 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 20
BslI CCNNNNNNNGG 2 cut(s) 110, 206
BsnI GGCC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 3 cut(s) 136, 151, 223
Bsp1720I GCTNAGC 1 cut(s) 90
BspACI CCGC 4 cut(s) 24, 84, 104, 258
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 1 cut(s) 71
BspDI ATCGAT 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 66
BspQI GCTCTTC 1 cut(s) 181
BsrI ACTGG 1 cut(s) 95
BssMI GATC 3 cut(s) 136, 151, 223
Bst2UI CCWGG 1 cut(s) 255
Bst6I CTCTTC 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 58, 90
BstKTI GATC 3 cut(s) 139, 154, 226
BstMBI GATC 3 cut(s) 136, 151, 223
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 73
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 1 cut(s) 198
BsuTUI ATCGAT 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 129
CaiI CAGNNNCTG 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 197
ClaI ATCGAT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 277
CviJI RGCY 7 cut(s) 18, 57, 67, 94, 145, 191, 198
CviKI_1 RGCY 7 cut(s) 18, 57, 67, 94, 145, 191, 198
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 2 cut(s) 58, 90
DpnI GATC 3 cut(s) 138, 153, 225
DpnII GATC 3 cut(s) 136, 151, 223
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 3 cut(s) 132, 153, 213
EcoICRI GAGCTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 20
FaiI YATR 1 cut(s) 109
FauI CCCGC 1 cut(s) 91
Fnu4HI GCNGC 2 cut(s) 87, 104
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 87, 104
GluI GCNGC 2 cut(s) 87, 104
HaeIII GGCC 1 cut(s) 198
HinfI GANTC 2 cut(s) 160, 263
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 3 cut(s) 61, 151, 159
Hpy188III TCNNGA 1 cut(s) 207
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 3 cut(s) 156, 174, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 2 cut(s) 58, 90
Kzo9I GATC 3 cut(s) 136, 151, 223
LguI GCTCTTC 1 cut(s) 181
LmnI GCTCC 2 cut(s) 15, 64
LpnPI CCDG 5 cut(s) 6, 108, 192, 240, 267
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 44
MalI GATC 3 cut(s) 138, 153, 225
MboI GATC 3 cut(s) 136, 151, 223
MboII GAAGA 2 cut(s) 146, 198
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 2 cut(s) 169, 202
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 2 cut(s) 198, 254
MnlI CCTC 2 cut(s) 55, 90
MseI TTAA 2 cut(s) 218, 243
MspA1I CMGCKG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 3 cut(s) 136, 151, 223
NlaIV GGNNCC 1 cut(s) 66
PciSI GCTCTTC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 263
PflMI CCANNNNNTGG 1 cut(s) 206
PkrI GCNGC 2 cut(s) 88, 105
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp124BI GAGCTC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 254
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SacI GAGCTC 1 cut(s) 20
SapI GCTCTTC 1 cut(s) 181
SaqAI TTAA 2 cut(s) 218, 243
SatI GCNGC 2 cut(s) 87, 104
Sau3AI GATC 3 cut(s) 136, 151, 223
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 20
SetI ASST 4 cut(s) 13, 20, 82, 193
SfaNI GCATC 1 cut(s) 123
SgeI CNNG 9 cut(s) 33, 61, 95, 107, 219, 266, 267, 284, 292
Sse9I AATT 2 cut(s) 169, 202
SsiI CCGC 4 cut(s) 24, 84, 104, 258
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 253
TaqI TCGA 2 cut(s) 117, 184
TasI AATT 2 cut(s) 169, 202
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 218, 243
Tru9I TTAA 2 cut(s) 218, 243
TscAI CASTG 1 cut(s) 136
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 27, 255
TspRI CASTG 1 cut(s) 136
Van91I CCANNNNNTGG 1 cut(s) 206
XapI RAATTY 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.