Prupe.5G105200_v2.0.a1

SPIRAL1-like 5

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
11171176 .. 11172203
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G105200.1

Sequence Viewer

Length: 315 bp
ATGAGTAGAGGTGGGAGCTATGGTGGTGGACAAAGTTCATTGGGGTACTTGTTTGGCTCAGATGAGCAACAAAGCCCACCTCCGCCATCTAAGCCGATAACACCCCCTTATGGCATCGATAGCTTGGACACCGTCACTGAAAAGCCTCCAGGTACCCCTAACTCTGCTGAAAAAGAAAAGGCAGCAGTTTCCAATAACTATCACAGAGCTGAAGGCCAAAATTCTGGGAACTTCTTAACTGATCGTCCAACAACAAAAGTTAATTCAGTTCCTGGGGGAGATTCCTCACTTGGGTACTTGTTTGGAGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

10.85

Weight (kDa)

5.21

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013065)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 152
AciI CCGC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 220
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 3 cut(s) 47, 154, 296
AfiI CCNNNNNNNGG 2 cut(s) 110, 291
AjnI CCWGG 2 cut(s) 148, 271
AluBI AGCT 3 cut(s) 18, 123, 209
AluI AGCT 3 cut(s) 18, 123, 209
Alw26I GTCTC 1 cut(s) 300
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 220
Asp718I GGTACC 1 cut(s) 152
BanI GGYRCC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 94
BciT130I CCWGG 2 cut(s) 150, 273
BcoDI GTCTC 1 cut(s) 300
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 2 cut(s) 150, 273
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 2 cut(s) 150, 273
BmsI GCATC 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 132
Bsa29I ATCGAT 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 291
BseBI CCWGG 2 cut(s) 150, 273
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 272
BseLI CCNNNNNNNGG 2 cut(s) 110, 291
BseMII CTCAG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 194
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 152
BshVI ATCGAT 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 110, 291
BsmAI GTCTC 1 cut(s) 300
BsnI GGCC 1 cut(s) 216
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 1 cut(s) 83
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 71
BspDI ATCGAT 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 1 cut(s) 241
Bst2UI CCWGG 2 cut(s) 150, 273
Bst4CI ACNGT 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 58, 90
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 91, 120
BstNI CCWGG 2 cut(s) 150, 273
BstSCI CCNGG 2 cut(s) 148, 271
BstV1I GCAGC 1 cut(s) 194
BstXI CCANNNNNNTGG 1 cut(s) 224
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 1 cut(s) 216
BsuTUI ATCGAT 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 135
CaiI CAGNNNCTG 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 117
Csp6I GTAC 3 cut(s) 46, 153, 295
CviJI RGCY 8 cut(s) 18, 57, 75, 94, 123, 145, 209, 216
CviKI_1 RGCY 8 cut(s) 18, 57, 75, 94, 123, 145, 209, 216
CviQI GTAC 3 cut(s) 46, 153, 295
DdeI CTNAG 2 cut(s) 58, 90
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
EciI GGCGGA 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 148, 271
FaiI YATR 2 cut(s) 21, 111
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 1 cut(s) 216
HinfI GANTC 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 1 cut(s) 133
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 120
HpyF3I CTNAG 2 cut(s) 58, 90
KpnI GGTACC 1 cut(s) 156
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 5 cut(s) 135, 162, 210, 258, 285
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 133
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MluCI AATT 2 cut(s) 220, 262
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 3 cut(s) 90, 156, 295
MseI TTAA 2 cut(s) 236, 261
MspR9I CCNGG 2 cut(s) 150, 273
MvaI CCWGG 2 cut(s) 150, 273
MwoI GCNNNNNNNGC 2 cut(s) 91, 120
NdeII GATC 1 cut(s) 241
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 281
PflFI GACNNNGTC 1 cut(s) 131
PkrI GCNGC 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 148, 271
PspGI CCWGG 2 cut(s) 148, 271
PspN4I GGNNCC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 272
PsyI GACNNNGTC 1 cut(s) 131
RsaI GTAC 3 cut(s) 47, 154, 296
RsaNI GTAC 3 cut(s) 46, 153, 295
SaqAI TTAA 2 cut(s) 236, 261
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 241
ScrFI CCNGG 2 cut(s) 150, 273
SetI ASST 6 cut(s) 13, 20, 82, 125, 154, 211
SfaNI GCATC 1 cut(s) 123
SgeI CNNG 9 cut(s) 61, 136, 161, 162, 237, 284, 285, 302, 310
Sse9I AATT 2 cut(s) 220, 262
SsiI CCGC 1 cut(s) 83
StyD4I CCNGG 2 cut(s) 148, 271
TaaI ACNGT 1 cut(s) 133
TaqI TCGA 1 cut(s) 117
TasI AATT 2 cut(s) 220, 262
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 2 cut(s) 236, 261
Tru9I TTAA 2 cut(s) 236, 261
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 27
TspRI CASTG 1 cut(s) 142
Tth111I GACNNNGTC 1 cut(s) 131
XapI RAATTY 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.