AT4G23730

Glucose-6-phosphate 1-epimerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011703
Physical Location & Seq
Forward (+)
12362166 .. 12365203
3038 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G23730.3

Sequence Viewer

Length: 921 bp
ATGGAACCATCATCTGGAACCGGTCCTGAGAAGAGACCAACCGTTGACTTGGTCAAGGATAGAAATGGAACGGATCAGATTCTTCTTCAGAATCCTAGAGGCGCCTCTGTAAAGATTAGTTTACATGGAGGACAAGTTCTTTCATGGAAGACTGACAAGGGTGATGAATTGTTATTCAACAGCACCAAGGCCAACTTGAAGCCTCCCCATCCGGTACGAGGAGGAATCCCTATATGCTTTCCTCAGTTTGGAACTCGGGGATCACTTGAGCAACACGGGTTTGCAAGAAACAAGATGTGGCTTGTAGAAAACAATCCACCTGCTTTACCTTCATTTGACTCAACTGGAAAAGCCTATGTTGATTTGGTGCTTAAGTCATCTGATGAAGATACGATGAGGATCTGGCCTTACAGCTTTGAGTTTCATCTGAGAGTCTCATTGGCATTAGATGGGAACCTAACACTGATATCACGAGTCAGAAACATCAATTCAAAGCCTTTTAGCTTTTCCATTGCTTACCACACTTACTTCTCCATTTCCGATATTAGTGAAGTTAGACTTGAAGGGCTGGAAACTCTTGACTATCTTGATAATATGCATGATAGAGAGCGGTTCACAGAGCAAGGCGATGCATTAACCTTTGAATCAGAGATCGATAGAGTGTACCTAAATTCTAAAGACGTGGTTGCCATTTTCGACCATGAGAGAAAACGCACATTCCTCATCAAGAAAGAAGGTCTACCTGATGTCGTGGTATGGAATCCATGGGAGAAGAAAGCGAGAGCATTGACGGATTTGGGAGATGATGAGTATAGACACATGTTGTGTGTGGATGGAGCAGCCATTGAGAAACCCATCACCTTGAAACCGGGTGAAGAATGGACCGGGAAATTACATCTCTCGCTTGTTCTTTCCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

306

Amino Acids

34.63

Weight (kDa)

5.88

Isoelectric Point (pI)

28.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 25 - 306 1.2e-65 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011703)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23730 AT4G23730 AT4G23730
fragaria_vesca FvH4_5g03890 FvH4_5g03890
malus_domestica MD06G1100000.v1.1 MD14G1119600.v1.1
prunus_persica Prupe.5G113600_v2.0.a1 Prupe.5G113600_v2.0.a1
pyrus_communis pycom06g09530
rosa_chinensis RchiOBHm_Chr7g0195621
rosa_laevigata RLG00000004104
rosa_multiflora Rmu_ssc0000078.1_g000016
rosa_roxburghii Rroxscaffold_3G00260300
rosa_rugosa Rorug07G0025000
rosa_samantha Rh7AG152500 Rh7CG157700 Rh7DG153500
rosa_wichuraiana Rw7G013040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 328
Acc36I ACCTGC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 14
AccBSI CCGCTC 1 cut(s) 610
AccI GTMKAC 1 cut(s) 739
AciI CCGC 1 cut(s) 610
AclWI GGATC 3 cut(s) 81, 268, 407
AcsI RAATTY 1 cut(s) 670
AcuI CTGAAG 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 2 cut(s) 216, 665
AfiI CCNNNNNNNGG 3 cut(s) 14, 218, 248
AflII CTTAAG 1 cut(s) 371
AflIII ACRYGT 1 cut(s) 819
AgeI ACCGGT 1 cut(s) 20
AgsI TTSAA 6 cut(s) 178, 199, 492, 563, 644, 865
AjiI CACGTC 1 cut(s) 682
AloI GAACNNNNNNTCC 2 cut(s) 120, 152
AluBI AGCT 2 cut(s) 414, 504
AluI AGCT 2 cut(s) 414, 504
Alw26I GTCTC 2 cut(s) 28, 439
AlwI GGATC 3 cut(s) 81, 268, 407
Ama87I CYCGRG 1 cut(s) 255
AoxI GGCC 2 cut(s) 189, 404
ApeKI GCWGC 1 cut(s) 839
ApoI RAATTY 1 cut(s) 670
AsiGI ACCGGT 1 cut(s) 20
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 23, 882
AsuC2I CCSGG 2 cut(s) 870, 886
AsuHPI GGTGA 3 cut(s) 173, 850, 884
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 23, 882
BanI GGYRCC 1 cut(s) 101
BauI CACGAG 1 cut(s) 471
BbsI GAAGAC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 851
BccI CCATC 5 cut(s) 16, 216, 443, 827, 863
BcnI CCSGG 2 cut(s) 870, 886
BcoDI GTCTC 2 cut(s) 28, 439
BfaI CTAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 328
BisI GCNGC 1 cut(s) 840
BlsI GCNGC 1 cut(s) 841
Bme1390I CCNGG 2 cut(s) 870, 886
Bme18I GGWCC 2 cut(s) 23, 882
BmeT110I CYCGRG 1 cut(s) 255
BmgBI CACGTC 1 cut(s) 682
BmgT120I GGNCC 2 cut(s) 23, 882
BmiI GGNNCC 4 cut(s) 6, 19, 103, 455
BmrFI CCNGG 2 cut(s) 870, 886
BmsI GCATC 1 cut(s) 619
BpiI GAAGAC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 2 cut(s) 870, 886
Bsa29I ATCGAT 1 cut(s) 654
BsaBI GATNNNNATC 1 cut(s) 398
BsaHI GRCGYC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 186, 764
BsaWI WCCGGW 2 cut(s) 20, 211
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 218, 248
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 510
Bse8I GATNNNNATC 1 cut(s) 398
BseCI ATCGAT 1 cut(s) 654
BseDI CCNNGG 2 cut(s) 186, 764
BseGI GGATG 2 cut(s) 208, 838
BseJI GATNNNNATC 1 cut(s) 398
BseLI CCNNNNNNNGG 3 cut(s) 14, 218, 248
BseMI GCAATG 1 cut(s) 510
BseMII CTCAG 3 cut(s) 18, 257, 419
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 851
BshFI GGCC 2 cut(s) 191, 406
BshNI GGYRCC 1 cut(s) 101
BshTI ACCGGT 1 cut(s) 20
BshVI ATCGAT 1 cut(s) 654
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 4 cut(s) 21, 212, 869, 885
BslI CCNNNNNNNGG 3 cut(s) 14, 218, 248
BsmAI GTCTC 2 cut(s) 28, 439
BsnI GGCC 2 cut(s) 191, 406
Bso31I GGTCTC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 255
Bsp143I GATC 4 cut(s) 73, 260, 399, 651
Bsp19I CCATGG 1 cut(s) 764
BspACI CCGC 1 cut(s) 610
BspANI GGCC 2 cut(s) 191, 406
BspCNI CTCAG 3 cut(s) 19, 256, 420
BspDI ATCGAT 1 cut(s) 654
BspLI GGNNCC 4 cut(s) 6, 19, 103, 455
BspMI ACCTGC 1 cut(s) 328
BspPI GGATC 3 cut(s) 81, 268, 407
BspT107I GGYRCC 1 cut(s) 101
BspTI CTTAAG 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 28
BsrBI CCGCTC 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 510
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 186, 764
BssMI GATC 4 cut(s) 73, 260, 399, 651
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 471
BssT1I CCWWGG 2 cut(s) 186, 764
Bst2BI CACGAG 1 cut(s) 471
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 102
BstAFI CTTAAG 1 cut(s) 371
BstDEI CTNAG 3 cut(s) 27, 243, 428
BstDSI CCRYGG 1 cut(s) 764
BstF5I GGATG 2 cut(s) 208, 838
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 4 cut(s) 76, 263, 402, 654
BstMAI GTCTC 2 cut(s) 28, 439
BstMBI GATC 4 cut(s) 73, 260, 399, 651
BstNSI RCATGY 1 cut(s) 823
BstSCI CCNGG 2 cut(s) 868, 884
BstV1I GCAGC 1 cut(s) 851
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 399
BstYI RGATCY 1 cut(s) 399
Bsu15I ATCGAT 1 cut(s) 654
BsuRI GGCC 2 cut(s) 191, 406
BsuTUI ATCGAT 1 cut(s) 654
BtgI CCRYGG 1 cut(s) 764
BtgZI GCGATG 1 cut(s) 642
BtrI CACGTC 1 cut(s) 682
BtsCI GGATG 2 cut(s) 208, 838
BtsIMutI CAGTG 1 cut(s) 461
BveI ACCTGC 1 cut(s) 328
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 23, 882
ClaI ATCGAT 1 cut(s) 654
Csp6I GTAC 2 cut(s) 215, 664
CspAI ACCGGT 1 cut(s) 20
CviAII CATG 6 cut(s) 125, 144, 599, 701, 765, 820
CviQI GTAC 2 cut(s) 215, 664
DdeI CTNAG 3 cut(s) 27, 243, 428
DinI GGCGCC 1 cut(s) 103
DpnI GATC 4 cut(s) 75, 262, 401, 653
DpnII GATC 4 cut(s) 73, 260, 399, 651
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco130I CCWWGG 2 cut(s) 186, 764
Eco31I GGTCTC 1 cut(s) 28
Eco32I GATATC 1 cut(s) 468
Eco47I GGWCC 2 cut(s) 23, 882
Eco57I CTGAAG 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 255
EcoRV GATATC 1 cut(s) 468
EcoT14I CCWWGG 2 cut(s) 186, 764
EcoT22I ATGCAT 2 cut(s) 600, 634
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 2 cut(s) 186, 764
FaeI CATG 6 cut(s) 128, 147, 602, 704, 768, 823
FalI AAGNNNNNCTT 4 cut(s) 179, 211, 543, 575
FatI CATG 6 cut(s) 124, 143, 598, 700, 764, 819
FblI GTMKAC 1 cut(s) 739
Fnu4HI GCNGC 1 cut(s) 840
FokI GGATG 2 cut(s) 195, 845
Fsp4HI GCNGC 1 cut(s) 840
FspBI CTAG 1 cut(s) 96
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 840
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 2 cut(s) 191, 406
HapII CCGG 4 cut(s) 21, 212, 869, 885
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 6 cut(s) 128, 147, 602, 704, 768, 823
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 8 cut(s) 79, 91, 225, 338, 432, 474, 644, 760
HpaII CCGG 4 cut(s) 21, 212, 869, 885
HphI GGTGA 3 cut(s) 173, 850, 884
Hpy166II GTNNAC 5 cut(s) 46, 122, 615, 664, 740
Hpy188I TCNGA 7 cut(s) 78, 90, 382, 429, 479, 541, 649
Hpy188III TCNNGA 6 cut(s) 15, 26, 471, 578, 587, 727
Hpy8I GTNNAC 5 cut(s) 46, 122, 615, 664, 740
HpyAV CCTTC 3 cut(s) 339, 557, 728
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 681
HpyCH4V TGCA 3 cut(s) 284, 598, 632
HpyF3I CTNAG 3 cut(s) 27, 243, 428
HpySE526I ACGT 1 cut(s) 681
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 6 cut(s) 128, 147, 602, 704, 768, 823
HspAI GCGC 1 cut(s) 102
KasI GGCGCC 1 cut(s) 101
Kzo9I GATC 4 cut(s) 73, 260, 399, 651
LmnI GCTCC 1 cut(s) 836
Lsp1109I GCAGC 1 cut(s) 851
LweI GCATC 1 cut(s) 619
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 681
MalI GATC 4 cut(s) 75, 262, 401, 653
MbiI CCGCTC 1 cut(s) 610
MboI GATC 4 cut(s) 73, 260, 399, 651
MboII GAAGA 7 cut(s) 43, 74, 77, 160, 398, 784, 887
MflI RGATCY 1 cut(s) 399
MluCI AATT 4 cut(s) 167, 487, 670, 890
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 3 cut(s) 332, 441, 483
MnlI CCTC 9 cut(s) 92, 115, 122, 212, 213, 215, 252, 390, 731
Mph1103I ATGCAT 2 cut(s) 600, 634
MseI TTAA 2 cut(s) 372, 635
MspCI CTTAAG 1 cut(s) 371
MspI CCGG 4 cut(s) 21, 212, 869, 885
MspR9I CCNGG 2 cut(s) 870, 886
NarI GGCGCC 1 cut(s) 102
NciI CCSGG 2 cut(s) 870, 886
NcoI CCATGG 1 cut(s) 764
NdeII GATC 4 cut(s) 73, 260, 399, 651
NlaIII CATG 6 cut(s) 128, 147, 602, 704, 768, 823
NlaIV GGNNCC 4 cut(s) 6, 19, 103, 455
NsiI ATGCAT 2 cut(s) 600, 634
NspI RCATGY 1 cut(s) 823
PaqCI CACCTGC 1 cut(s) 328
PciI ACATGT 1 cut(s) 819
PfeI GAWTC 5 cut(s) 79, 91, 225, 644, 760
PflFI GACNNNGTC 1 cut(s) 50
PflMI CCANNNNNTGG 1 cut(s) 14
PinAI ACCGGT 1 cut(s) 20
PkrI GCNGC 1 cut(s) 841
PleI GAGTC 3 cut(s) 332, 440, 482
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 3 cut(s) 332, 440, 482
PscI ACATGT 1 cut(s) 819
PspN4I GGNNCC 4 cut(s) 6, 19, 103, 455
PspPI GGNCC 2 cut(s) 23, 882
PsuI RGATCY 1 cut(s) 399
PsyI GACNNNGTC 1 cut(s) 50
RsaI GTAC 2 cut(s) 216, 665
RsaNI GTAC 2 cut(s) 215, 664
SaqAI TTAA 2 cut(s) 372, 635
SatI GCNGC 1 cut(s) 840
Sau3AI GATC 4 cut(s) 73, 260, 399, 651
Sau96I GGNCC 2 cut(s) 23, 882
SchI GAGTC 3 cut(s) 332, 441, 483
ScrFI CCNGG 2 cut(s) 870, 886
SfaNI GCATC 1 cut(s) 619
SfoI GGCGCC 1 cut(s) 103
SinI GGWCC 2 cut(s) 23, 882
SmlI CTYRAG 2 cut(s) 266, 371
SmoI CTYRAG 2 cut(s) 266, 371
Sse9I AATT 4 cut(s) 167, 487, 670, 890
SsiI CCGC 1 cut(s) 610
SspDI GGCGCC 1 cut(s) 101
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 2 cut(s) 868, 884
StyI CCWWGG 2 cut(s) 186, 764
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 684
TaqI TCGA 2 cut(s) 654, 696
TasI AATT 4 cut(s) 167, 487, 670, 890
TfiI GAWTC 5 cut(s) 79, 91, 225, 644, 760
Tru1I TTAA 2 cut(s) 372, 635
Tru9I TTAA 2 cut(s) 372, 635
TscAI CASTG 1 cut(s) 468
TseI GCWGC 1 cut(s) 839
TspDTI ATGAA 5 cut(s) 132, 180, 321, 399, 413
TspGWI ACGGA 2 cut(s) 86, 806
TspRI CASTG 1 cut(s) 468
Tth111I GACNNNGTC 1 cut(s) 50
Van91I CCANNNNNTGG 1 cut(s) 14
Vha464I CTTAAG 1 cut(s) 371
VpaK11BI GGWCC 2 cut(s) 23, 882
XapI RAATTY 1 cut(s) 670
XceI RCATGY 1 cut(s) 823
XmiI GTMKAC 1 cut(s) 739
XspI CTAG 1 cut(s) 96
Zsp2I ATGCAT 2 cut(s) 600, 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.