pycom06g09530

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011703
Physical Location & Seq
Forward (+)
14827754 .. 14829288
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g09530.2

Sequence Viewer

Length: 894 bp
ATGAATCCTTCTGGAGCAGCAGTTGAATTTTCGAAAGACAAGAATGGAATCGATCAAGTTCATCTTCACAACCCGCGAGGTGCTTCCGTTAGGGTGAGCTTGCACGGAGGCCAGGTTCTTTCCTGGAAAAATGAACGCGGCGAGGAATTGTTATTCACTAGTAGCAAGGCGATTTTTAAGCCGCCAAAAGCAGTCCGAGGAGGAATTCCAATCTGTTTTCCGCAGGTTGGGACCGGATCGATATTGGACCAAAATGGGTTCGCCAGGAACAGAATTTGGGCCATCGACAATGATCCTCCACCACTACATCCAAATTATTCAAATGGAAAAGCCTACATCGACTTGCTGCTCAAACCATCCGACGATGATCTAAAGATTTGGCCACATAGTTTTGAGTTTCGCCTTAGGGTGTCGCTTGCAGCAGAAGGGCATCTAACGCTTATATCGCGCATCAGAAACATCAACAGCAAGCCTTTCAGTTTTTCATTCGCTTTTCATACGTATTTCTCCATTTCGGATATCAGTGAAGTGAGGGTTGAGGGATTGGAGACTCTAGACTACCTAGACAACCTATGTCAAAAGGAGCGGTTTACAGAACAAGGCGACGCCTTAACATTCGAATCTGAGGTGGACCGCGCTTACCTTAAGTCTTCGGATGTGATAGCTGTTTTCGATCATGAAAAGAAGAGGACATTCACCGTGCGAAAGGAGGGACTTCCAGATGTTGTTGTATGGAATCCATGGGAGAAGTCCAAAGCGATGGCGGATCTTGGAGACGAAGAGTACAAACAAATGCTTTGTGTTAATGGAGCATCAATCGAAAAACCAATCACCTTGAAGCCCGGCGAGGAATGGACGGGTCGATTGGAGCTCTCTGTTGTCCCTTCCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

298

Amino Acids

33.38

Weight (kDa)

5.94

Isoelectric Point (pI)

21.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011703)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23730 AT4G23730 AT4G23730
fragaria_vesca FvH4_5g03890 FvH4_5g03890
malus_domestica MD06G1100000.v1.1 MD14G1119600.v1.1
prunus_persica Prupe.5G113600_v2.0.a1 Prupe.5G113600_v2.0.a1
pyrus_communis pycom06g09530
rosa_chinensis RchiOBHm_Chr7g0195621
rosa_laevigata RLG00000004104
rosa_multiflora Rmu_ssc0000078.1_g000016
rosa_roxburghii Rroxscaffold_3G00260300
rosa_rugosa Rorug07G0025000
rosa_samantha Rh7AG152500 Rh7CG157700 Rh7DG153500
rosa_wichuraiana Rw7G013040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AccBSI CCGCTC 1 cut(s) 586
AccII CGCG 4 cut(s) 76, 138, 448, 636
AciI CCGC 7 cut(s) 74, 138, 182, 221, 586, 634, 764
AclWI GGATC 3 cut(s) 244, 287, 774
AcoI YGGCCR 1 cut(s) 380
AcsI RAATTY 3 cut(s) 26, 204, 273
AcyI GRCGYC 1 cut(s) 606
AfaI GTAC 1 cut(s) 785
AfiI CCNNNNNNNGG 1 cut(s) 227
AflII CTTAAG 1 cut(s) 644
AgsI TTSAA 3 cut(s) 26, 321, 838
AhlI ACTAGT 1 cut(s) 158
AjnI CCWGG 3 cut(s) 111, 122, 263
AloI GAACNNNNNNTCC 2 cut(s) 99, 131
AluBI AGCT 3 cut(s) 99, 665, 871
AluI AGCT 3 cut(s) 99, 665, 871
Alw21I GWGCWC 1 cut(s) 873
Alw26I GTCTC 2 cut(s) 542, 768
AlwI GGATC 3 cut(s) 244, 287, 774
AoxI GGCC 3 cut(s) 109, 279, 380
ApeKI GCWGC 3 cut(s) 17, 346, 419
ApoI RAATTY 3 cut(s) 26, 204, 273
AspLEI GCGC 2 cut(s) 450, 638
AspS9I GGNCC 4 cut(s) 231, 247, 279, 631
AsuC2I CCSGG 1 cut(s) 843
AsuHPI GGTGA 3 cut(s) 106, 688, 823
AsuII TTCGAA 2 cut(s) 32, 618
AvaII GGWCC 3 cut(s) 231, 247, 631
AxyI CCTNAGG 1 cut(s) 404
BalI TGGCCA 1 cut(s) 382
BanII GRGCYC 1 cut(s) 873
BbsI GAAGAC 1 cut(s) 642
Bbv12I GWGCWC 1 cut(s) 873
BbvI GCAGC 3 cut(s) 29, 333, 431
BccI CCATC 3 cut(s) 290, 364, 754
BciT130I CCWGG 3 cut(s) 113, 124, 265
BcnI CCSGG 1 cut(s) 843
BcoDI GTCTC 2 cut(s) 542, 768
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 3 cut(s) 159, 554, 563
BfrI CTTAAG 1 cut(s) 644
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 5 cut(s) 18, 139, 182, 347, 420
BlsI GCNGC 5 cut(s) 19, 140, 183, 348, 421
Bme1390I CCNGG 4 cut(s) 113, 124, 265, 843
Bme18I GGWCC 3 cut(s) 231, 247, 631
BmgT120I GGNCC 4 cut(s) 231, 247, 279, 631
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 4 cut(s) 113, 124, 265, 843
BmsI GCATC 3 cut(s) 439, 459, 821
BpiI GAAGAC 1 cut(s) 642
BpmI CTGGAG 1 cut(s) 33
Bpu14I TTCGAA 2 cut(s) 32, 618
BpuMI CCSGG 1 cut(s) 843
Bsa29I ATCGAT 2 cut(s) 51, 239
BsaAI YACGTR 1 cut(s) 501
BsaHI GRCGYC 1 cut(s) 606
BsaJI CCNNGG 2 cut(s) 196, 740
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 888
Bse21I CCTNAGG 1 cut(s) 404
BseBI CCWGG 3 cut(s) 113, 124, 265
BseCI ATCGAT 2 cut(s) 51, 239
BseDI CCNNGG 2 cut(s) 196, 740
BseGI GGATG 3 cut(s) 307, 356, 661
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 615
BseNI ACTGG 1 cut(s) 888
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 3 cut(s) 29, 333, 431
Bsh1236I CGCG 4 cut(s) 76, 138, 448, 636
BshFI GGCC 3 cut(s) 111, 281, 382
BshVI ATCGAT 2 cut(s) 51, 239
BsiHKAI GWGCWC 1 cut(s) 873
BsiSI CCGG 2 cut(s) 234, 843
BslFI GGGAC 3 cut(s) 244, 726, 866
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 2 cut(s) 542, 768
BsmBI CGTCTC 1 cut(s) 768
BsmFI GGGAC 3 cut(s) 244, 726, 866
BsnI GGCC 3 cut(s) 111, 281, 382
Bsp119I TTCGAA 2 cut(s) 32, 618
Bsp1286I GDGCHC 1 cut(s) 873
Bsp143I GATC 6 cut(s) 52, 236, 292, 367, 673, 766
Bsp19I CCATGG 1 cut(s) 740
BspACI CCGC 7 cut(s) 74, 138, 182, 221, 586, 634, 764
BspANI GGCC 3 cut(s) 111, 281, 382
BspCNI CTCAG 1 cut(s) 616
BspDI ATCGAT 2 cut(s) 51, 239
BspFNI CGCG 4 cut(s) 76, 138, 448, 636
BspHI TCATGA 1 cut(s) 676
BspLI GGNNCC 1 cut(s) 232
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 3 cut(s) 244, 287, 774
BspT104I TTCGAA 2 cut(s) 32, 618
BspTI CTTAAG 1 cut(s) 644
BsrBI CCGCTC 1 cut(s) 586
BsrI ACTGG 1 cut(s) 888
BssECI CCNNGG 2 cut(s) 196, 740
BssMI GATC 6 cut(s) 52, 236, 292, 367, 673, 766
BssNI GRCGYC 1 cut(s) 606
BssT1I CCWWGG 1 cut(s) 740
Bst2UI CCWGG 3 cut(s) 113, 124, 265
Bst4CI ACNGT 1 cut(s) 700
Bst6I CTCTTC 2 cut(s) 680, 774
BstACI GRCGYC 1 cut(s) 606
BstAFI CTTAAG 1 cut(s) 644
BstBAI YACGTR 1 cut(s) 501
BstBI TTCGAA 2 cut(s) 32, 618
BstC8I GCNNGC 3 cut(s) 101, 417, 470
BstDEI CTNAG 2 cut(s) 404, 624
BstDSI CCRYGG 1 cut(s) 740
BstF5I GGATG 3 cut(s) 307, 356, 661
BstFNI CGCG 4 cut(s) 76, 138, 448, 636
BstHHI GCGC 2 cut(s) 450, 638
BstKTI GATC 6 cut(s) 55, 239, 295, 370, 676, 769
BstMAI GTCTC 2 cut(s) 542, 768
BstMBI GATC 6 cut(s) 52, 236, 292, 367, 673, 766
BstMWI GCNNNNNNNGC 2 cut(s) 436, 445
BstNI CCWGG 3 cut(s) 113, 124, 265
BstSCI CCNGG 4 cut(s) 111, 122, 263, 841
BstSNI TACGTA 1 cut(s) 501
BstUI CGCG 4 cut(s) 76, 138, 448, 636
BstV1I GCAGC 3 cut(s) 29, 333, 431
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 1 cut(s) 766
BstXI CCANNNNNNTGG 1 cut(s) 760
BstYI RGATCY 1 cut(s) 766
Bsu15I ATCGAT 2 cut(s) 51, 239
Bsu36I CCTNAGG 1 cut(s) 404
BsuRI GGCC 3 cut(s) 111, 281, 382
BsuTUI ATCGAT 2 cut(s) 51, 239
BtgI CCRYGG 1 cut(s) 740
BtgZI GCGATG 1 cut(s) 773
BtsCI GGATG 3 cut(s) 307, 356, 661
BtsIMutI CAGTG 1 cut(s) 529
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 3 cut(s) 101, 417, 470
CciI TCATGA 1 cut(s) 676
CfoI GCGC 2 cut(s) 450, 638
Cfr13I GGNCC 4 cut(s) 231, 247, 279, 631
ClaI ATCGAT 2 cut(s) 51, 239
CseI GACGC 1 cut(s) 614
Csp6I GTAC 1 cut(s) 784
CviAII CATG 2 cut(s) 677, 741
CviQI GTAC 1 cut(s) 784
DdeI CTNAG 2 cut(s) 404, 624
DpnI GATC 6 cut(s) 54, 238, 294, 369, 675, 768
DpnII GATC 6 cut(s) 52, 236, 292, 367, 673, 766
EaeI YGGCCR 1 cut(s) 380
Eam1104I CTCTTC 2 cut(s) 680, 774
EarI CTCTTC 2 cut(s) 680, 774
EciI GGCGGA 1 cut(s) 779
Ecl136II GAGCTC 1 cut(s) 871
Eco105I TACGTA 1 cut(s) 501
Eco130I CCWWGG 1 cut(s) 740
Eco24I GRGCYC 1 cut(s) 873
Eco32I GATATC 1 cut(s) 520
Eco47I GGWCC 3 cut(s) 231, 247, 631
Eco53kI GAGCTC 1 cut(s) 871
Eco81I CCTNAGG 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 871
EcoRI GAATTC 1 cut(s) 204
EcoRII CCWGG 3 cut(s) 111, 122, 263
EcoRV GATATC 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 740
EcoT38I GRGCYC 1 cut(s) 873
ErhI CCWWGG 1 cut(s) 740
Esp3I CGTCTC 1 cut(s) 768
FaeI CATG 2 cut(s) 680, 744
FaiI YATR 7 cut(s) 387, 443, 498, 574, 678, 733, 742
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FaqI GGGAC 3 cut(s) 244, 726, 866
FatI CATG 2 cut(s) 676, 740
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 5 cut(s) 18, 139, 182, 347, 420
FokI GGATG 3 cut(s) 294, 343, 668
FriOI GRGCYC 1 cut(s) 873
Fsp4HI GCNGC 5 cut(s) 18, 139, 182, 347, 420
FspBI CTAG 3 cut(s) 159, 554, 563
GlaI GCGC 2 cut(s) 449, 637
GluI GCNGC 5 cut(s) 18, 139, 182, 347, 420
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 3 cut(s) 111, 281, 382
HapII CCGG 2 cut(s) 234, 843
HgaI GACGC 1 cut(s) 614
HhaI GCGC 2 cut(s) 450, 638
Hin1I GRCGYC 1 cut(s) 606
Hin1II CATG 2 cut(s) 680, 744
Hin6I GCGC 2 cut(s) 448, 636
HinP1I GCGC 2 cut(s) 448, 636
HinfI GANTC 5 cut(s) 4, 48, 550, 620, 736
HpaII CCGG 2 cut(s) 234, 843
HphI GGTGA 3 cut(s) 106, 688, 823
Hpy166II GTNNAC 2 cut(s) 591, 631
Hpy188I TCNGA 6 cut(s) 197, 361, 455, 517, 625, 655
Hpy188III TCNNGA 4 cut(s) 12, 554, 677, 719
Hpy8I GTNNAC 2 cut(s) 591, 631
Hpy99I CGWCG 2 cut(s) 365, 608
HpyAV CCTTC 3 cut(s) 18, 419, 894
HpyCH4III ACNGT 1 cut(s) 700
HpyCH4IV ACGT 1 cut(s) 500
HpyCH4V TGCA 2 cut(s) 103, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 436, 445
HpyF3I CTNAG 2 cut(s) 404, 624
HpySE526I ACGT 1 cut(s) 500
Hsp92I GRCGYC 1 cut(s) 606
Hsp92II CATG 2 cut(s) 680, 744
HspAI GCGC 2 cut(s) 448, 636
Kzo9I GATC 6 cut(s) 52, 236, 292, 367, 673, 766
LmnI GCTCC 4 cut(s) 14, 583, 809, 868
Lsp1109I GCAGC 3 cut(s) 29, 333, 431
LweI GCATC 3 cut(s) 439, 459, 821
MaeI CTAG 3 cut(s) 159, 554, 563
MaeII ACGT 1 cut(s) 500
MalI GATC 6 cut(s) 54, 238, 294, 369, 675, 768
MbiI CCGCTC 1 cut(s) 586
MboI GATC 6 cut(s) 52, 236, 292, 367, 673, 766
MboII GAAGA 4 cut(s) 56, 642, 697, 791
MflI RGATCY 1 cut(s) 766
MhlI GDGCHC 1 cut(s) 873
MlsI TGGCCA 1 cut(s) 382
MluCI AATT 5 cut(s) 26, 146, 204, 273, 313
MluNI TGGCCA 1 cut(s) 382
MlyI GAGTC 1 cut(s) 544
MmeI TCCRAC 1 cut(s) 384
Mox20I TGGCCA 1 cut(s) 382
MscI TGGCCA 1 cut(s) 382
MseI TTAA 5 cut(s) 177, 611, 645, 804, 892
Msp20I TGGCCA 1 cut(s) 382
MspCI CTTAAG 1 cut(s) 644
MspI CCGG 2 cut(s) 234, 843
MspR9I CCNGG 4 cut(s) 113, 124, 265, 843
MvaI CCWGG 3 cut(s) 113, 124, 265
MvnI CGCG 4 cut(s) 76, 138, 448, 636
MwoI GCNNNNNNNGC 2 cut(s) 436, 445
NciI CCSGG 1 cut(s) 843
NcoI CCATGG 1 cut(s) 740
NdeII GATC 6 cut(s) 52, 236, 292, 367, 673, 766
NlaIII CATG 2 cut(s) 680, 744
NlaIV GGNNCC 1 cut(s) 232
NspV TTCGAA 2 cut(s) 32, 618
PagI TCATGA 1 cut(s) 676
PfeI GAWTC 4 cut(s) 4, 48, 620, 736
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 5 cut(s) 19, 140, 183, 348, 421
PleI GAGTC 1 cut(s) 544
PpsI GAGTC 1 cut(s) 544
Ppu21I YACGTR 1 cut(s) 501
Psp124BI GAGCTC 1 cut(s) 873
Psp6I CCWGG 3 cut(s) 111, 122, 263
PspGI CCWGG 3 cut(s) 111, 122, 263
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 4 cut(s) 231, 247, 279, 631
PsuI RGATCY 1 cut(s) 766
RsaI GTAC 1 cut(s) 785
RsaNI GTAC 1 cut(s) 784
SacI GAGCTC 1 cut(s) 873
SaqAI TTAA 5 cut(s) 177, 611, 645, 804, 892
SatI GCNGC 5 cut(s) 18, 139, 182, 347, 420
Sau3AI GATC 6 cut(s) 52, 236, 292, 367, 673, 766
Sau96I GGNCC 4 cut(s) 231, 247, 279, 631
SchI GAGTC 1 cut(s) 544
ScrFI CCNGG 4 cut(s) 113, 124, 265, 843
SduI GDGCHC 1 cut(s) 873
SfaNI GCATC 3 cut(s) 439, 459, 821
SfuI TTCGAA 2 cut(s) 32, 618
SinI GGWCC 3 cut(s) 231, 247, 631
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
SnaBI TACGTA 1 cut(s) 501
SpeI ACTAGT 1 cut(s) 158
Sse9I AATT 5 cut(s) 26, 146, 204, 273, 313
SsiI CCGC 7 cut(s) 74, 138, 182, 221, 586, 634, 764
SspMI CTAG 3 cut(s) 159, 554, 563
SstI GAGCTC 1 cut(s) 873
StyD4I CCNGG 4 cut(s) 111, 122, 263, 841
StyI CCWWGG 1 cut(s) 740
TaaI ACNGT 1 cut(s) 700
TaiI ACGT 1 cut(s) 503
TaqI TCGA 9 cut(s) 32, 51, 239, 285, 339, 618, 672, 819, 862
TasI AATT 5 cut(s) 26, 146, 204, 273, 313
TatI WGTACW 1 cut(s) 783
TauI GCSGC 2 cut(s) 141, 184
TfiI GAWTC 4 cut(s) 4, 48, 620, 736
Tru1I TTAA 5 cut(s) 177, 611, 645, 804, 892
Tru9I TTAA 5 cut(s) 177, 611, 645, 804, 892
TscAI CASTG 1 cut(s) 529
TseI GCWGC 3 cut(s) 17, 346, 419
TspDTI ATGAA 6 cut(s) 17, 50, 147, 474, 485, 693
TspGWI ACGGA 2 cut(s) 76, 120
TspRI CASTG 1 cut(s) 529
Vha464I CTTAAG 1 cut(s) 644
VpaK11BI GGWCC 3 cut(s) 231, 247, 631
XapI RAATTY 3 cut(s) 26, 204, 273
XbaI TCTAGA 1 cut(s) 553
XspI CTAG 3 cut(s) 159, 554, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.