MD06G1100000.v1.1

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0011703
Physical Location & Seq
Forward (+)
23627262 .. 23629664
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1100000.v1.1.491

Sequence Viewer

Length: 891 bp
ATGAATCCTTCTGGAGCAGCAGTTGAATTTTCGAAAGACAAGAATGGAATCGATCAAGTTCATCTTCACAACCCTCGCGGTGCTTCCGTTAGGGTGAGCTTGCACGGAGGCCAGGTTCTTTCCTGGAAAACTGAACGCGGCGAGGAATTGTTATTCACTAGTAGCAAGGCGATTTTTAAGCCGCCAAAAGCAGTCCGAGGAGGAATTCCAATCTGTTTTCCGCAGGTTGGGACCGGATCATTGGACCAAAATGGGTTTGCCAGGAACAGAATTTGGGCCATCGACAATGATCCTCCACCACTACATCCAAATGATTCGAATGGAAAAGCCTACATCGACTTGCTGCTCAAACCATCCGACGATGATCTAAAGATTTGGCCACATAGTTTTGAGTTTCGCCTTAGGGTGTCGCTTGCAGCAGAAGGGCATCTAACGCTTATATCGCGCATCAGAAACATCAACAGCAAGCCTTTCAGTTTTTCATTCGCTTTTCATACGTATTTCTCCATTTCGGATATCAGTGAAGTGAGGGTTGAGGGATTGGAGACTCTAGACTACCTAGACAACCTATGTCAAAAGGAGCGGTTTACAGAACAAGGCGACGCCTTAACATTCGAATCTGAGGTGGACCGTGCTTACCTTAAGTCTTCGGATGTGATAGCTGTTTTCGATCATGAAAAGAAGAGGACATTCACCGTGCGAAAGGAGGGACTTCCAGATGTTGTTGTATGGAATCCGTGGGAGAAGTCCAAAGCGATGGCGGATCTTGGAGACGAAGAGTACAAACAGATGCTTTGTGTTAATGGAGCATCAATCGAAAAACCGATCACCTTGAAGCCCGGCGAGGAATGGACGGGTCGATTGGAGCTCTCTGTTGTCCCTTCCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

297

Amino Acids

33.2

Weight (kDa)

5.81

Isoelectric Point (pI)

22.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 18 - 290 6.1e-67 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011703)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23730 AT4G23730 AT4G23730
fragaria_vesca FvH4_5g03890 FvH4_5g03890
malus_domestica MD06G1100000.v1.1 MD14G1119600.v1.1
prunus_persica Prupe.5G113600_v2.0.a1 Prupe.5G113600_v2.0.a1
pyrus_communis pycom06g09530
rosa_chinensis RchiOBHm_Chr7g0195621
rosa_laevigata RLG00000004104
rosa_multiflora Rmu_ssc0000078.1_g000016
rosa_roxburghii Rroxscaffold_3G00260300
rosa_rugosa Rorug07G0025000
rosa_samantha Rh7AG152500 Rh7CG157700 Rh7DG153500
rosa_wichuraiana Rw7G013040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AccBSI CCGCTC 1 cut(s) 583
AccII CGCG 3 cut(s) 78, 138, 445
AciI CCGC 6 cut(s) 78, 138, 182, 221, 583, 761
AclWI GGATC 3 cut(s) 244, 284, 771
AcoI YGGCCR 1 cut(s) 377
AcsI RAATTY 3 cut(s) 26, 204, 270
AcyI GRCGYC 1 cut(s) 603
AfaI GTAC 1 cut(s) 782
AfiI CCNNNNNNNGG 1 cut(s) 227
AflII CTTAAG 1 cut(s) 641
AgsI TTSAA 2 cut(s) 26, 835
AhlI ACTAGT 1 cut(s) 158
AjnI CCWGG 3 cut(s) 111, 122, 260
AloI GAACNNNNNNTCC 2 cut(s) 99, 131
AluBI AGCT 3 cut(s) 99, 662, 868
AluI AGCT 3 cut(s) 99, 662, 868
Alw21I GWGCWC 1 cut(s) 870
Alw26I GTCTC 2 cut(s) 539, 765
AlwI GGATC 3 cut(s) 244, 284, 771
AoxI GGCC 3 cut(s) 109, 276, 377
ApeKI GCWGC 3 cut(s) 17, 343, 416
ApoI RAATTY 3 cut(s) 26, 204, 270
AspLEI GCGC 1 cut(s) 447
AspS9I GGNCC 4 cut(s) 231, 244, 276, 628
AsuC2I CCSGG 1 cut(s) 840
AsuHPI GGTGA 3 cut(s) 106, 685, 820
AsuII TTCGAA 3 cut(s) 32, 317, 615
AvaII GGWCC 3 cut(s) 231, 244, 628
AxyI CCTNAGG 1 cut(s) 401
BalI TGGCCA 1 cut(s) 379
BanII GRGCYC 1 cut(s) 870
BbsI GAAGAC 1 cut(s) 639
Bbv12I GWGCWC 1 cut(s) 870
BbvI GCAGC 3 cut(s) 29, 330, 428
BccI CCATC 3 cut(s) 287, 361, 751
BciT130I CCWGG 3 cut(s) 113, 124, 262
BcnI CCSGG 1 cut(s) 840
BcoDI GTCTC 2 cut(s) 539, 765
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 3 cut(s) 159, 551, 560
BfrI CTTAAG 1 cut(s) 641
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 5 cut(s) 18, 139, 182, 344, 417
BlsI GCNGC 5 cut(s) 19, 140, 183, 345, 418
Bme1390I CCNGG 4 cut(s) 113, 124, 262, 840
Bme18I GGWCC 3 cut(s) 231, 244, 628
BmgT120I GGNCC 4 cut(s) 231, 244, 276, 628
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 4 cut(s) 113, 124, 262, 840
BmsI GCATC 4 cut(s) 436, 456, 780, 818
BpiI GAAGAC 1 cut(s) 639
BpmI CTGGAG 1 cut(s) 33
Bpu14I TTCGAA 3 cut(s) 32, 317, 615
BpuMI CCSGG 1 cut(s) 840
Bsa29I ATCGAT 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 498
BsaHI GRCGYC 1 cut(s) 603
BsaJI CCNNGG 2 cut(s) 196, 737
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 885
Bse21I CCTNAGG 1 cut(s) 401
BseBI CCWGG 3 cut(s) 113, 124, 262
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 196, 737
BseGI GGATG 3 cut(s) 304, 353, 658
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 612
BseNI ACTGG 1 cut(s) 885
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 3 cut(s) 29, 330, 428
Bsh1236I CGCG 3 cut(s) 78, 138, 445
BshFI GGCC 3 cut(s) 111, 278, 379
BshVI ATCGAT 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 870
BsiSI CCGG 2 cut(s) 234, 840
BslFI GGGAC 3 cut(s) 244, 723, 863
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 2 cut(s) 539, 765
BsmBI CGTCTC 1 cut(s) 765
BsmFI GGGAC 3 cut(s) 244, 723, 863
BsnI GGCC 3 cut(s) 111, 278, 379
Bsp119I TTCGAA 3 cut(s) 32, 317, 615
Bsp1286I GDGCHC 1 cut(s) 870
Bsp143I GATC 7 cut(s) 52, 236, 289, 364, 670, 763, 825
BspACI CCGC 6 cut(s) 78, 138, 182, 221, 583, 761
BspANI GGCC 3 cut(s) 111, 278, 379
BspCNI CTCAG 1 cut(s) 613
BspDI ATCGAT 1 cut(s) 51
BspFNI CGCG 3 cut(s) 78, 138, 445
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 1 cut(s) 232
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 3 cut(s) 244, 284, 771
BspT104I TTCGAA 3 cut(s) 32, 317, 615
BspTI CTTAAG 1 cut(s) 641
BsrBI CCGCTC 1 cut(s) 583
BsrI ACTGG 1 cut(s) 885
BssECI CCNNGG 2 cut(s) 196, 737
BssMI GATC 7 cut(s) 52, 236, 289, 364, 670, 763, 825
BssNI GRCGYC 1 cut(s) 603
Bst2UI CCWGG 3 cut(s) 113, 124, 262
Bst4CI ACNGT 2 cut(s) 632, 697
Bst6I CTCTTC 2 cut(s) 677, 771
BstACI GRCGYC 1 cut(s) 603
BstAFI CTTAAG 1 cut(s) 641
BstBAI YACGTR 1 cut(s) 498
BstBI TTCGAA 3 cut(s) 32, 317, 615
BstC8I GCNNGC 3 cut(s) 101, 414, 467
BstDEI CTNAG 2 cut(s) 401, 621
BstDSI CCRYGG 1 cut(s) 737
BstF5I GGATG 3 cut(s) 304, 353, 658
BstFNI CGCG 3 cut(s) 78, 138, 445
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 7 cut(s) 55, 239, 292, 367, 673, 766, 828
BstMAI GTCTC 2 cut(s) 539, 765
BstMBI GATC 7 cut(s) 52, 236, 289, 364, 670, 763, 825
BstMWI GCNNNNNNNGC 2 cut(s) 433, 442
BstNI CCWGG 3 cut(s) 113, 124, 262
BstSCI CCNGG 4 cut(s) 111, 122, 260, 838
BstSNI TACGTA 1 cut(s) 498
BstUI CGCG 3 cut(s) 78, 138, 445
BstV1I GCAGC 3 cut(s) 29, 330, 428
BstV2I GAAGAC 1 cut(s) 639
BstX2I RGATCY 1 cut(s) 763
BstXI CCANNNNNNTGG 1 cut(s) 757
BstYI RGATCY 1 cut(s) 763
Bsu15I ATCGAT 1 cut(s) 51
Bsu36I CCTNAGG 1 cut(s) 401
BsuRI GGCC 3 cut(s) 111, 278, 379
BsuTUI ATCGAT 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 737
BtgZI GCGATG 1 cut(s) 770
BtsCI GGATG 3 cut(s) 304, 353, 658
BtsIMutI CAGTG 1 cut(s) 526
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 3 cut(s) 101, 414, 467
CciI TCATGA 1 cut(s) 673
CfoI GCGC 1 cut(s) 447
Cfr13I GGNCC 4 cut(s) 231, 244, 276, 628
ClaI ATCGAT 1 cut(s) 51
CseI GACGC 1 cut(s) 611
Csp6I GTAC 1 cut(s) 781
CviAII CATG 1 cut(s) 674
CviQI GTAC 1 cut(s) 781
DdeI CTNAG 2 cut(s) 401, 621
DpnI GATC 7 cut(s) 54, 238, 291, 366, 672, 765, 827
DpnII GATC 7 cut(s) 52, 236, 289, 364, 670, 763, 825
EaeI YGGCCR 1 cut(s) 377
Eam1104I CTCTTC 2 cut(s) 677, 771
EarI CTCTTC 2 cut(s) 677, 771
EciI GGCGGA 1 cut(s) 776
Ecl136II GAGCTC 1 cut(s) 868
Eco105I TACGTA 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 870
Eco32I GATATC 1 cut(s) 517
Eco47I GGWCC 3 cut(s) 231, 244, 628
Eco53kI GAGCTC 1 cut(s) 868
Eco81I CCTNAGG 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 868
EcoRI GAATTC 1 cut(s) 204
EcoRII CCWGG 3 cut(s) 111, 122, 260
EcoRV GATATC 1 cut(s) 517
EcoT38I GRGCYC 1 cut(s) 870
Esp3I CGTCTC 1 cut(s) 765
FaeI CATG 1 cut(s) 677
FaiI YATR 6 cut(s) 384, 440, 495, 571, 675, 730
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FaqI GGGAC 3 cut(s) 244, 723, 863
FatI CATG 1 cut(s) 673
Fnu4HI GCNGC 5 cut(s) 18, 139, 182, 344, 417
FokI GGATG 3 cut(s) 291, 340, 665
FriOI GRGCYC 1 cut(s) 870
Fsp4HI GCNGC 5 cut(s) 18, 139, 182, 344, 417
FspBI CTAG 3 cut(s) 159, 551, 560
GlaI GCGC 1 cut(s) 446
GluI GCNGC 5 cut(s) 18, 139, 182, 344, 417
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 3 cut(s) 111, 278, 379
HapII CCGG 2 cut(s) 234, 840
HgaI GACGC 1 cut(s) 611
HhaI GCGC 1 cut(s) 447
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 1 cut(s) 677
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HinfI GANTC 6 cut(s) 4, 48, 314, 547, 617, 733
HpaII CCGG 2 cut(s) 234, 840
HphI GGTGA 3 cut(s) 106, 685, 820
Hpy166II GTNNAC 2 cut(s) 588, 628
Hpy188I TCNGA 6 cut(s) 197, 358, 452, 514, 622, 652
Hpy188III TCNNGA 4 cut(s) 12, 551, 674, 716
Hpy8I GTNNAC 2 cut(s) 588, 628
Hpy99I CGWCG 2 cut(s) 362, 605
HpyAV CCTTC 3 cut(s) 18, 416, 891
HpyCH4III ACNGT 2 cut(s) 632, 697
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 2 cut(s) 103, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 433, 442
HpyF3I CTNAG 2 cut(s) 401, 621
HpySE526I ACGT 1 cut(s) 497
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 1 cut(s) 677
HspAI GCGC 1 cut(s) 445
Kzo9I GATC 7 cut(s) 52, 236, 289, 364, 670, 763, 825
LmnI GCTCC 4 cut(s) 14, 580, 806, 865
Lsp1109I GCAGC 3 cut(s) 29, 330, 428
LweI GCATC 4 cut(s) 436, 456, 780, 818
MaeI CTAG 3 cut(s) 159, 551, 560
MaeII ACGT 1 cut(s) 497
MalI GATC 7 cut(s) 54, 238, 291, 366, 672, 765, 827
MbiI CCGCTC 1 cut(s) 583
MboI GATC 7 cut(s) 52, 236, 289, 364, 670, 763, 825
MboII GAAGA 4 cut(s) 56, 639, 694, 788
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 1 cut(s) 870
MlsI TGGCCA 1 cut(s) 379
MluCI AATT 4 cut(s) 26, 146, 204, 270
MluNI TGGCCA 1 cut(s) 379
MlyI GAGTC 1 cut(s) 541
MmeI TCCRAC 1 cut(s) 381
Mox20I TGGCCA 1 cut(s) 379
MscI TGGCCA 1 cut(s) 379
MseI TTAA 5 cut(s) 177, 608, 642, 801, 889
MslI CAYNNNNRTG 1 cut(s) 309
Msp20I TGGCCA 1 cut(s) 379
MspCI CTTAAG 1 cut(s) 641
MspI CCGG 2 cut(s) 234, 840
MspR9I CCNGG 4 cut(s) 113, 124, 262, 840
MvaI CCWGG 3 cut(s) 113, 124, 262
MvnI CGCG 3 cut(s) 78, 138, 445
MwoI GCNNNNNNNGC 2 cut(s) 433, 442
NciI CCSGG 1 cut(s) 840
NdeII GATC 7 cut(s) 52, 236, 289, 364, 670, 763, 825
NlaIII CATG 1 cut(s) 677
NlaIV GGNNCC 1 cut(s) 232
NspV TTCGAA 3 cut(s) 32, 317, 615
PagI TCATGA 1 cut(s) 673
PfeI GAWTC 5 cut(s) 4, 48, 314, 617, 733
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 5 cut(s) 19, 140, 183, 345, 418
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
Ppu21I YACGTR 1 cut(s) 498
Psp124BI GAGCTC 1 cut(s) 870
Psp6I CCWGG 3 cut(s) 111, 122, 260
PspGI CCWGG 3 cut(s) 111, 122, 260
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 4 cut(s) 231, 244, 276, 628
PsuI RGATCY 1 cut(s) 763
RsaI GTAC 1 cut(s) 782
RsaNI GTAC 1 cut(s) 781
RseI CAYNNNNRTG 1 cut(s) 309
SacI GAGCTC 1 cut(s) 870
SaqAI TTAA 5 cut(s) 177, 608, 642, 801, 889
SatI GCNGC 5 cut(s) 18, 139, 182, 344, 417
Sau3AI GATC 7 cut(s) 52, 236, 289, 364, 670, 763, 825
Sau96I GGNCC 4 cut(s) 231, 244, 276, 628
SchI GAGTC 1 cut(s) 541
ScrFI CCNGG 4 cut(s) 113, 124, 262, 840
SduI GDGCHC 1 cut(s) 870
SfaNI GCATC 4 cut(s) 436, 456, 780, 818
SfuI TTCGAA 3 cut(s) 32, 317, 615
SinI GGWCC 3 cut(s) 231, 244, 628
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
SnaBI TACGTA 1 cut(s) 498
SpeI ACTAGT 1 cut(s) 158
Sse9I AATT 4 cut(s) 26, 146, 204, 270
SsiI CCGC 6 cut(s) 78, 138, 182, 221, 583, 761
SspMI CTAG 3 cut(s) 159, 551, 560
SstI GAGCTC 1 cut(s) 870
StyD4I CCNGG 4 cut(s) 111, 122, 260, 838
TaaI ACNGT 2 cut(s) 632, 697
TaiI ACGT 1 cut(s) 500
TaqI TCGA 9 cut(s) 32, 51, 282, 317, 336, 615, 669, 816, 859
TasI AATT 4 cut(s) 26, 146, 204, 270
TatI WGTACW 1 cut(s) 780
TauI GCSGC 2 cut(s) 141, 184
TfiI GAWTC 5 cut(s) 4, 48, 314, 617, 733
Tru1I TTAA 5 cut(s) 177, 608, 642, 801, 889
Tru9I TTAA 5 cut(s) 177, 608, 642, 801, 889
TscAI CASTG 1 cut(s) 526
TseI GCWGC 3 cut(s) 17, 343, 416
TspDTI ATGAA 5 cut(s) 17, 50, 471, 482, 690
TspGWI ACGGA 3 cut(s) 76, 120, 726
TspRI CASTG 1 cut(s) 526
Vha464I CTTAAG 1 cut(s) 641
VpaK11BI GGWCC 3 cut(s) 231, 244, 628
XapI RAATTY 3 cut(s) 26, 204, 270
XbaI TCTAGA 1 cut(s) 550
XspI CTAG 3 cut(s) 159, 551, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.