FvH4_5g03890

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011703
Physical Location & Seq
Forward (+)
2321786 .. 2325089
3304 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03890.t2

Sequence Viewer

Length: 897 bp
ATGAGTCATTCTGGAGCAGCAGTAGTTGAAGTTACAAAAGACAAGAATGGAATCGATCAAGTTATCCTTCAAAATCCTCGAGGAGCTTCTGCCAGGGTTAGCTTACATGGAGGCCAGGTTTTGTCCTGGAGGAGTGAGCGTGGGGAAGAATTGTTGTTCATCAGTAGTAAGGCAATCTTTAAGCCACCAAAAGCAGTGAGAGGAGGAATTCCAATCTGTTTTCCACAGTTTGGAAATGGATCATTGGAGCAGAATGGATTTGCTAGGAACAGGATTTGGGTAATCGACAATGAACCTCCATCTCTAAATCCTTTTGACTCTAATGGCAAGGCCTACATTGACTTGCTACTCAAACCATCTGAGGATGATTTAAAGATTTGGCCACATAGCTTCGAGTTTCGTCTTAGGGTCTCACTGGCAGCAGAAGGGCATCTAACCCTGATATCACGCATCAGGAACATCAATTGCAAGCCTTTCAGTTTTTCGATTGCCTTTCATACATATTTCTCCATTTCTGATATCAGTGAAGTGAGGATCGAAGGCCTGGAGACTCTTGACTACCTAGACAATCTGTGTGAAAAGGAGCGCTTTACAGAACAAGGGGATGCCTTAACATTTGAATCAGAGGTGGACCGAGCTTACCTTAGTTCTTCAGGTGCAGTAGCTGTTTTTGATCATGAAAAAAAGAGGACATTTGTTGTACGAAAGGAGGGACTTCCAGATGTTGCGGTATGGAACCCCTGGGATAAGAAATCCAAATCCATAGTTGATCTTGGAGATGAAGAGTACAAACAGATGCTTTGTGTTGATGGAGCAGCAATTGAGAAGCCAATCACCTTGAAGCCAGGTGAGGAATGGACTGGCCGATTGGAGCTCTCTGTTGTGCCTTCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

299

Amino Acids

33.33

Weight (kDa)

5.52

Isoelectric Point (pI)

30.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 20 - 284 9.4e-61 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011703)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23730 AT4G23730 AT4G23730
fragaria_vesca FvH4_5g03890 FvH4_5g03890
malus_domestica MD06G1100000.v1.1 MD14G1119600.v1.1
prunus_persica Prupe.5G113600_v2.0.a1 Prupe.5G113600_v2.0.a1
pyrus_communis pycom06g09530
rosa_chinensis RchiOBHm_Chr7g0195621
rosa_laevigata RLG00000004104
rosa_multiflora Rmu_ssc0000078.1_g000016
rosa_roxburghii Rroxscaffold_3G00260300
rosa_rugosa Rorug07G0025000
rosa_samantha Rh7AG152500 Rh7CG157700 Rh7DG153500
rosa_wichuraiana Rw7G013040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 78
AccB7I CCANNNNNTGG 1 cut(s) 230
AciI CCGC 1 cut(s) 728
AclWI GGATC 2 cut(s) 247, 542
AcoI YGGCCR 2 cut(s) 380, 862
AcsI RAATTY 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 636
AfaI GTAC 2 cut(s) 702, 788
AfeI AGCGCT 1 cut(s) 587
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 5 cut(s) 29, 71, 620, 841, 891
AjnI CCWGG 6 cut(s) 92, 114, 125, 543, 740, 844
AluBI AGCT 6 cut(s) 86, 102, 390, 638, 665, 874
AluI AGCT 6 cut(s) 86, 102, 390, 638, 665, 874
Alw21I GWGCWC 1 cut(s) 876
Alw26I GTCTC 2 cut(s) 415, 542
AlwI GGATC 2 cut(s) 247, 542
AlwNI CAGNNNCTG 1 cut(s) 665
Ama87I CYCGRG 1 cut(s) 78
Aor51HI AGCGCT 1 cut(s) 587
AoxI GGCC 5 cut(s) 112, 330, 380, 541, 862
ApeKI GCWGC 3 cut(s) 17, 419, 815
ApoI RAATTY 1 cut(s) 207
AspLEI GCGC 1 cut(s) 588
AspS9I GGNCC 1 cut(s) 631
AsuHPI GGTGA 2 cut(s) 826, 860
AvaI CYCGRG 1 cut(s) 78
AvaII GGWCC 1 cut(s) 631
BalI TGGCCA 1 cut(s) 382
BanII GRGCYC 1 cut(s) 876
Bbv12I GWGCWC 1 cut(s) 876
BbvI GCAGC 3 cut(s) 29, 431, 827
BccI CCATC 3 cut(s) 307, 364, 803
BciT130I CCWGG 6 cut(s) 94, 116, 127, 545, 742, 846
BclI TGATCA 1 cut(s) 673
BcoDI GTCTC 2 cut(s) 415, 542
BfaI CTAG 2 cut(s) 264, 563
BfoI RGCGCY 1 cut(s) 589
BisI GCNGC 3 cut(s) 18, 420, 816
BlsI GCNGC 3 cut(s) 19, 421, 817
Bme1390I CCNGG 6 cut(s) 94, 116, 127, 545, 742, 846
Bme18I GGWCC 1 cut(s) 631
BmeT110I CYCGRG 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 631
BmiI GGNNCC 1 cut(s) 737
BmrFI CCNGG 6 cut(s) 94, 116, 127, 545, 742, 846
BmsI GCATC 4 cut(s) 439, 459, 595, 786
BpmI CTGGAG 3 cut(s) 33, 148, 566
Bsa29I ATCGAT 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 415
BsaJI CCNNGG 3 cut(s) 93, 740, 741
BsaXI ACNNNNNCTCC 6 cut(s) 6, 36, 102, 124, 132, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 420, 865
BseBI CCWGG 6 cut(s) 94, 116, 127, 545, 742, 846
BseCI ATCGAT 1 cut(s) 54
BseDI CCNNGG 3 cut(s) 93, 740, 741
BseGI GGATG 2 cut(s) 370, 610
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 2 cut(s) 420, 865
BseRI GAGGAG 3 cut(s) 96, 145, 216
BseXI GCAGC 3 cut(s) 29, 431, 827
BsgI GTGCAG 1 cut(s) 678
BshFI GGCC 5 cut(s) 114, 332, 382, 543, 864
BshVI ATCGAT 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 876
BsiHKCI CYCGRG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 726
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 2 cut(s) 415, 542
BsmFI GGGAC 1 cut(s) 726
BsnI GGCC 5 cut(s) 114, 332, 382, 543, 864
Bso31I GGTCTC 1 cut(s) 415
BsoBI CYCGRG 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 876
Bsp143I GATC 5 cut(s) 55, 239, 534, 673, 769
BspACI CCGC 1 cut(s) 728
BspANI GGCC 5 cut(s) 114, 332, 382, 543, 864
BspCNI CTCAG 1 cut(s) 352
BspDI ATCGAT 1 cut(s) 54
BspHI TCATGA 1 cut(s) 676
BspLI GGNNCC 1 cut(s) 737
BspPI GGATC 2 cut(s) 247, 542
BspTNI GGTCTC 1 cut(s) 415
BsrI ACTGG 2 cut(s) 420, 865
BssECI CCNNGG 3 cut(s) 93, 740, 741
BssMI GATC 5 cut(s) 55, 239, 534, 673, 769
Bst2UI CCWGG 6 cut(s) 94, 116, 127, 545, 742, 846
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 777
BstC8I GCNNGC 1 cut(s) 470
BstDEI CTNAG 3 cut(s) 360, 404, 644
BstF5I GGATG 2 cut(s) 370, 610
BstH2I RGCGCY 1 cut(s) 589
BstHHI GCGC 1 cut(s) 588
BstKTI GATC 5 cut(s) 58, 242, 537, 676, 772
BstMAI GTCTC 2 cut(s) 415, 542
BstMBI GATC 5 cut(s) 55, 239, 534, 673, 769
BstNI CCWGG 6 cut(s) 94, 116, 127, 545, 742, 846
BstSCI CCNGG 6 cut(s) 92, 114, 125, 543, 740, 844
BstV1I GCAGC 3 cut(s) 29, 431, 827
Bsu15I ATCGAT 1 cut(s) 54
BsuRI GGCC 5 cut(s) 114, 332, 382, 543, 864
BsuTUI ATCGAT 1 cut(s) 54
BtsCI GGATG 2 cut(s) 370, 610
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 3 cut(s) 201, 413, 529
Cac8I GCNNGC 1 cut(s) 470
CaiI CAGNNNCTG 1 cut(s) 665
CciI TCATGA 1 cut(s) 676
CfoI GCGC 1 cut(s) 588
Cfr13I GGNCC 1 cut(s) 631
ClaI ATCGAT 1 cut(s) 54
Csp6I GTAC 2 cut(s) 701, 787
CviAII CATG 2 cut(s) 107, 677
CviQI GTAC 2 cut(s) 701, 787
DdeI CTNAG 3 cut(s) 360, 404, 644
DpnI GATC 5 cut(s) 57, 241, 536, 675, 771
DpnII GATC 5 cut(s) 55, 239, 534, 673, 769
DraI TTTAAA 1 cut(s) 372
EaeI YGGCCR 2 cut(s) 380, 862
Eam1104I CTCTTC 1 cut(s) 777
EarI CTCTTC 1 cut(s) 777
Ecl136II GAGCTC 1 cut(s) 874
Eco147I AGGCCT 2 cut(s) 332, 543
Eco24I GRGCYC 1 cut(s) 876
Eco31I GGTCTC 1 cut(s) 415
Eco32I GATATC 2 cut(s) 444, 520
Eco47I GGWCC 1 cut(s) 631
Eco47III AGCGCT 1 cut(s) 587
Eco53kI GAGCTC 1 cut(s) 874
Eco57I CTGAAG 1 cut(s) 636
Eco88I CYCGRG 1 cut(s) 78
EcoICRI GAGCTC 1 cut(s) 874
EcoRI GAATTC 1 cut(s) 207
EcoRII CCWGG 6 cut(s) 92, 114, 125, 543, 740, 844
EcoRV GATATC 2 cut(s) 444, 520
EcoT38I GRGCYC 1 cut(s) 876
FaeI CATG 2 cut(s) 110, 680
FaiI YATR 7 cut(s) 108, 387, 498, 502, 678, 733, 764
FalI AAGNNNNNCTT 6 cut(s) 51, 83, 161, 193, 572, 604
FaqI GGGAC 1 cut(s) 726
FatI CATG 2 cut(s) 106, 676
FbaI TGATCA 1 cut(s) 673
Fnu4HI GCNGC 3 cut(s) 18, 420, 816
FokI GGATG 2 cut(s) 377, 617
FriOI GRGCYC 1 cut(s) 876
Fsp4HI GCNGC 3 cut(s) 18, 420, 816
FspBI CTAG 2 cut(s) 264, 563
GlaI GCGC 1 cut(s) 587
GluI GCNGC 3 cut(s) 18, 420, 816
GsuI CTGGAG 3 cut(s) 33, 148, 566
HaeII RGCGCY 1 cut(s) 589
HaeIII GGCC 5 cut(s) 114, 332, 382, 543, 864
HhaI GCGC 1 cut(s) 588
Hin1II CATG 2 cut(s) 110, 680
Hin6I GCGC 1 cut(s) 586
HinP1I GCGC 1 cut(s) 586
HinfI GANTC 5 cut(s) 4, 51, 317, 550, 620
HphI GGTGA 2 cut(s) 826, 860
Hpy166II GTNNAC 1 cut(s) 631
Hpy188I TCNGA 3 cut(s) 361, 517, 625
Hpy188III TCNNGA 5 cut(s) 12, 454, 554, 677, 719
Hpy8I GTNNAC 1 cut(s) 631
HpyAV CCTTC 4 cut(s) 77, 419, 533, 897
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4V TGCA 2 cut(s) 468, 659
HpyF3I CTNAG 3 cut(s) 360, 404, 644
Hsp92II CATG 2 cut(s) 110, 680
HspAI GCGC 1 cut(s) 586
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 5 cut(s) 55, 239, 534, 673, 769
LmnI GCTCC 6 cut(s) 14, 83, 247, 583, 812, 871
Lsp1109I GCAGC 3 cut(s) 29, 431, 827
LweI GCATC 4 cut(s) 439, 459, 595, 786
MaeI CTAG 2 cut(s) 264, 563
MaeIII GTNAC 1 cut(s) 31
MalI GATC 5 cut(s) 57, 241, 536, 675, 771
MboI GATC 5 cut(s) 55, 239, 534, 673, 769
MboII GAAGA 3 cut(s) 158, 642, 794
MfeI CAATTG 2 cut(s) 463, 819
MhlI GDGCHC 1 cut(s) 876
MlsI TGGCCA 1 cut(s) 382
MluCI AATT 4 cut(s) 149, 207, 463, 819
MluNI TGGCCA 1 cut(s) 382
MlyI GAGTC 3 cut(s) 13, 311, 544
Mox20I TGGCCA 1 cut(s) 382
MscI TGGCCA 1 cut(s) 382
MseI TTAA 4 cut(s) 180, 371, 611, 895
Msp20I TGGCCA 1 cut(s) 382
MspR9I CCNGG 6 cut(s) 94, 116, 127, 545, 742, 846
MunI CAATTG 2 cut(s) 463, 819
MvaI CCWGG 6 cut(s) 94, 116, 127, 545, 742, 846
NdeII GATC 5 cut(s) 55, 239, 534, 673, 769
NlaIII CATG 2 cut(s) 110, 680
NlaIV GGNNCC 1 cut(s) 737
PaeR7I CTCGAG 1 cut(s) 78
PagI TCATGA 1 cut(s) 676
PasI CCCWGGG 1 cut(s) 741
PceI AGGCCT 2 cut(s) 332, 543
PfeI GAWTC 2 cut(s) 51, 620
PflMI CCANNNNNTGG 1 cut(s) 230
PfoI TCCNGGA 1 cut(s) 125
PkrI GCNGC 3 cut(s) 19, 421, 817
PleI GAGTC 3 cut(s) 12, 311, 544
PpsI GAGTC 3 cut(s) 12, 311, 544
Psp124BI GAGCTC 1 cut(s) 876
Psp6I CCWGG 6 cut(s) 92, 114, 125, 543, 740, 844
PspGI CCWGG 6 cut(s) 92, 114, 125, 543, 740, 844
PspN4I GGNNCC 1 cut(s) 737
PspPI GGNCC 1 cut(s) 631
PspXI VCTCGAGB 1 cut(s) 78
PstNI CAGNNNCTG 1 cut(s) 665
RsaI GTAC 2 cut(s) 702, 788
RsaNI GTAC 2 cut(s) 701, 787
SacI GAGCTC 1 cut(s) 876
SaqAI TTAA 4 cut(s) 180, 371, 611, 895
SatI GCNGC 3 cut(s) 18, 420, 816
Sau3AI GATC 5 cut(s) 55, 239, 534, 673, 769
Sau96I GGNCC 1 cut(s) 631
SchI GAGTC 3 cut(s) 13, 311, 544
ScrFI CCNGG 6 cut(s) 94, 116, 127, 545, 742, 846
SduI GDGCHC 1 cut(s) 876
SfaNI GCATC 4 cut(s) 439, 459, 595, 786
Sfr274I CTCGAG 1 cut(s) 78
SinI GGWCC 1 cut(s) 631
SlaI CTCGAG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 4 cut(s) 149, 207, 463, 819
SseBI AGGCCT 2 cut(s) 332, 543
SsiI CCGC 1 cut(s) 728
SspMI CTAG 2 cut(s) 264, 563
SstI GAGCTC 1 cut(s) 876
StuI AGGCCT 2 cut(s) 332, 543
StyD4I CCNGG 6 cut(s) 92, 114, 125, 543, 740, 844
TaaI ACNGT 1 cut(s) 228
TaqI TCGA 6 cut(s) 54, 79, 285, 393, 485, 537
TaqII GACCGA 1 cut(s) 648
TasI AATT 4 cut(s) 149, 207, 463, 819
TatI WGTACW 1 cut(s) 786
TfiI GAWTC 2 cut(s) 51, 620
Tru1I TTAA 4 cut(s) 180, 371, 611, 895
Tru9I TTAA 4 cut(s) 180, 371, 611, 895
TscAI CASTG 3 cut(s) 201, 420, 529
TseI GCWGC 3 cut(s) 17, 419, 815
TspDTI ATGAA 5 cut(s) 148, 306, 485, 693, 795
TspRI CASTG 3 cut(s) 201, 420, 529
Van91I CCANNNNNTGG 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 631
XapI RAATTY 1 cut(s) 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 852
XhoI CTCGAG 1 cut(s) 78
XspI CTAG 2 cut(s) 264, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.